HEADER RNA 13-NOV-24 9EBV TITLE STRUCTURE OF THE BACILLUS SUBTILIS YJDF RIBOSWITCH APTAMER DOMAIN IN TITLE 2 COMPLEX WITH LUMICHROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (81-MER); COMPND 3 CHAIN: A, M; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 4 ORGANISM_TAXID: 224308 KEYWDS RIBOSWITCH, FLAVIN, APTAMER, RNA EXPDTA X-RAY DIFFRACTION AUTHOR R.T.BATEY,S.F.SPRADLIN REVDAT 2 15-APR-26 9EBV 1 JRNL REVDAT 1 19-NOV-25 9EBV 0 JRNL AUTH S.F.SPRADLIN,K.A.DICKERSON,R.T.BATEY JRNL TITL STRUCTURAL AND FUNCTIONAL CLUES CHALLENGE THE HYPOTHESIS JRNL TITL 2 THAT THE YJDF RIBOSWITCH IS NATIVELY REGULATED THROUGH BROAD JRNL TITL 3 RECOGNITION OF AZAAROMATIC COMPOUNDS. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 41277687 JRNL DOI 10.1093/NAR/GKAF1278 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 21434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7930 - 6.0173 0.98 1510 155 0.1740 0.1780 REMARK 3 2 6.0173 - 4.7985 0.98 1440 148 0.1612 0.1906 REMARK 3 3 4.7985 - 4.1985 0.98 1422 147 0.1696 0.2071 REMARK 3 4 4.1985 - 3.8176 0.98 1393 140 0.1791 0.2025 REMARK 3 5 3.8176 - 3.5457 0.99 1423 145 0.2061 0.2193 REMARK 3 6 3.5457 - 3.3377 0.99 1401 141 0.2188 0.2544 REMARK 3 7 3.3377 - 3.1712 0.98 1373 144 0.2252 0.2576 REMARK 3 8 3.1712 - 3.0337 0.98 1382 140 0.2765 0.3446 REMARK 3 9 3.0337 - 2.9173 0.99 1400 140 0.3018 0.3673 REMARK 3 10 2.9173 - 2.8169 0.99 1395 141 0.3452 0.4184 REMARK 3 11 2.8169 - 2.7291 1.00 1398 142 0.3598 0.4204 REMARK 3 12 2.7291 - 2.6512 1.00 1394 143 0.3714 0.4834 REMARK 3 13 2.6512 - 2.5816 0.99 1392 142 0.3257 0.3683 REMARK 3 14 2.5816 - 2.5190 0.82 1128 115 0.3196 0.3483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3931 REMARK 3 ANGLE : 0.774 6120 REMARK 3 CHIRALITY : 0.035 808 REMARK 3 PLANARITY : 0.005 164 REMARK 3 DIHEDRAL : 12.200 1922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1000289100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 20.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% MPD, 9 MM SPERMINE, 40 MM NA REMARK 280 -CACODYLATE PH 7.0, 20 MM KCL, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.35900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.46350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.35900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.46350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N1 GDP A 1 N3 C A 80 2.04 REMARK 500 N2 GDP M 1 O2 C M 80 2.07 REMARK 500 OP1 A M 16 O HOH M 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C A 80 C2 - N3 - C4 ANGL. DEV. = 4.6 DEGREES REMARK 500 C A 80 N3 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 C A 80 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 C A 80 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 C A 80 C5 - C4 - N4 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 17 O4 REMARK 620 2 U A 18 O4 60.7 REMARK 620 3 G A 32 O6 139.5 79.0 REMARK 620 4 G A 33 O6 91.2 64.0 66.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 30 OP1 REMARK 620 2 U A 49 OP2 74.3 REMARK 620 3 HOH A 210 O 72.1 121.3 REMARK 620 4 HOH A 217 O 69.3 65.7 58.0 REMARK 620 5 HOH A 220 O 142.0 113.5 72.7 80.2 REMARK 620 6 HOH A 228 O 77.1 136.2 79.0 131.3 109.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 30 OP1 REMARK 620 2 G A 48 O3' 104.8 REMARK 620 3 G A 48 O2' 145.6 56.2 REMARK 620 4 U A 49 OP2 53.2 51.6 102.6 REMARK 620 5 HOH A 221 O 151.8 99.3 61.7 147.4 REMARK 620 6 HOH A 232 O 97.1 140.4 87.5 138.6 72.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 107 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 35 O4 REMARK 620 2 G A 36 O6 64.1 REMARK 620 3 G A 44 O6 122.0 60.8 REMARK 620 4 U A 45 O4 83.3 82.0 72.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 41 OP1 REMARK 620 2 HOH A 209 O 56.2 REMARK 620 3 HOH A 211 O 77.5 64.9 REMARK 620 4 HOH A 223 O 117.3 65.6 98.6 REMARK 620 5 HOH A 236 O 137.0 99.4 59.6 70.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 108 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 69 O4 REMARK 620 2 G A 70 O6 75.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 216 O REMARK 620 2 HOH A 233 O 131.8 REMARK 620 3 HOH M 233 O 106.7 62.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG M 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 225 O REMARK 620 2 GDP M 1 O2B 162.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K M 109 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U M 18 O4 REMARK 620 2 G M 32 O6 109.2 REMARK 620 3 G M 33 O6 69.2 74.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG M 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C M 30 OP1 REMARK 620 2 U M 49 OP2 82.4 REMARK 620 3 HOH M 206 O 88.9 77.4 REMARK 620 4 HOH M 217 O 68.1 116.1 150.2 REMARK 620 5 HOH M 223 O 79.2 147.2 75.3 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG M 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C M 30 OP1 REMARK 620 2 G M 48 O3' 109.5 REMARK 620 3 G M 48 O2' 157.2 56.9 REMARK 620 4 U M 49 OP2 61.1 52.8 98.3 REMARK 620 5 HOH M 217 O 55.0 123.1 114.3 77.9 REMARK 620 6 HOH M 220 O 134.5 105.9 68.1 158.4 122.5 REMARK 620 7 HOH M 229 O 103.3 129.7 78.6 121.9 53.3 73.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG M 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 207 O REMARK 620 2 HOH M 227 O 91.9 REMARK 620 3 HOH M 228 O 77.9 75.0 REMARK 620 4 HOH M 232 O 72.8 76.7 138.1 REMARK 620 N 1 2 3 DBREF 9EBV A 1 81 PDB 9EBV 9EBV 1 81 DBREF 9EBV M 1 81 PDB 9EBV 9EBV 1 81 SEQRES 1 A 81 GDP G A U G A A A A A A C A SEQRES 2 A 81 C G A U U C G G U U G G U SEQRES 3 A 81 A G U C C G G A U G C C G SEQRES 4 A 81 A A A G G U C A G U A A C SEQRES 5 A 81 C U U C C A C G A A A G U SEQRES 6 A 81 G G A U G U C C A U C A U SEQRES 7 A 81 C C A SEQRES 1 M 81 GDP G A U G A A A A A A C A SEQRES 2 M 81 C G A U U C G G U U G G U SEQRES 3 M 81 A G U C C G G A U G C C G SEQRES 4 M 81 A A A G G U C A G U A A C SEQRES 5 M 81 C U U C C A C G A A A G U SEQRES 6 M 81 G G A U G U C C A U C A U SEQRES 7 M 81 C C A HET GDP A 1 28 HET GDP M 1 28 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET K A 105 1 HET K A 106 1 HET K A 107 1 HET K A 108 1 HET LUM A 109 18 HET MG M 101 1 HET MG M 102 1 HET MG M 103 1 HET MG M 104 1 HET MG M 105 1 HET MG M 106 1 HET K M 107 1 HET K M 108 1 HET K M 109 1 HET LUM M 110 18 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM LUM LUMICHROME HETSYN LUM 7,8-DIMETHYLALLOXAZINE; 6,7-DIMETHYLALLOXAZINE FORMUL 1 GDP 2(C10 H15 N5 O11 P2) FORMUL 3 MG 10(MG 2+) FORMUL 7 K 7(K 1+) FORMUL 11 LUM 2(C12 H10 N4 O2) FORMUL 22 HOH *71(H2 O) LINK O3' GDP A 1 P G A 2 1555 1555 1.59 LINK O6 GDP A 1 N4 C A 80 1555 1555 1.31 LINK O3' GDP M 1 P G M 2 1555 1555 1.59 LINK O4 U A 17 K K A 105 1555 1555 3.19 LINK O4 U A 18 K K A 105 1555 1555 3.11 LINK OP1 G A 25 K K A 106 1555 1555 3.47 LINK OP1 C A 30 MG MG A 102 1555 1555 2.26 LINK OP1 C A 30 MG MG A 104 1555 1555 3.00 LINK O6 G A 32 K K A 105 1555 1555 3.27 LINK O6 G A 33 K K A 105 1555 1555 3.10 LINK O4 U A 35 K K A 107 1555 1555 3.17 LINK O6 G A 36 K K A 107 1555 1555 3.07 LINK OP1 A A 41 MG MG A 103 1555 1555 2.97 LINK O6 G A 44 K K A 107 1555 1555 2.92 LINK O4 U A 45 K K A 107 1555 1555 2.92 LINK O3' G A 48 MG MG A 104 1555 1555 2.82 LINK O2' G A 48 MG MG A 104 1555 1555 2.91 LINK OP2 U A 49 MG MG A 102 1555 1555 2.13 LINK OP2 U A 49 MG MG A 104 1555 1555 2.93 LINK O4 U A 69 K K A 108 1555 1555 3.12 LINK O6 G A 70 K K A 108 1555 1555 2.63 LINK MG MG A 101 O HOH A 216 1555 1555 2.79 LINK MG MG A 101 O HOH A 233 1555 1555 2.55 LINK MG MG A 101 O HOH M 233 1555 2766 2.87 LINK MG MG A 102 O HOH A 210 1555 1555 2.06 LINK MG MG A 102 O HOH A 217 1555 1555 2.70 LINK MG MG A 102 O HOH A 220 1555 1555 2.07 LINK MG MG A 102 O HOH A 228 1555 1555 2.37 LINK MG MG A 103 O HOH A 209 1555 1555 2.27 LINK MG MG A 103 O HOH A 211 1555 4456 2.63 LINK MG MG A 103 O HOH A 223 1555 1555 2.33 LINK MG MG A 103 O HOH A 236 1555 4456 2.18 LINK MG MG A 104 O HOH A 221 1555 1555 2.20 LINK MG MG A 104 O HOH A 232 1555 1555 2.17 LINK O HOH A 225 MG MG M 101 1555 1555 2.09 LINK O2B GDP M 1 MG MG M 101 1555 1555 2.29 LINK O4 U M 18 K K M 109 1555 1555 3.34 LINK O2' A M 27 K K M 108 1555 1555 2.88 LINK OP1 C M 30 MG MG M 105 1555 1555 2.47 LINK OP1 C M 30 MG MG M 106 1555 1555 2.92 LINK O6 G M 32 K K M 109 1555 1555 3.02 LINK O6 G M 33 K K M 109 1555 1555 3.21 LINK O3' G M 48 MG MG M 106 1555 1555 2.83 LINK O2' G M 48 MG MG M 106 1555 1555 2.91 LINK OP2 U M 49 MG MG M 105 1555 1555 1.89 LINK OP2 U M 49 MG MG M 106 1555 1555 2.80 LINK OP2 A M 50 MG MG M 103 1555 1555 2.60 LINK MG MG M 102 O HOH M 207 1555 1555 2.54 LINK MG MG M 102 O HOH M 227 1555 1555 2.03 LINK MG MG M 102 O HOH M 228 1555 1555 2.58 LINK MG MG M 102 O HOH M 232 1555 1555 2.45 LINK MG MG M 105 O HOH M 206 1555 1555 2.10 LINK MG MG M 105 O HOH M 217 1555 1555 2.35 LINK MG MG M 105 O HOH M 223 1555 1555 2.03 LINK MG MG M 106 O HOH M 217 1555 1555 2.94 LINK MG MG M 106 O HOH M 220 1555 1555 2.00 LINK MG MG M 106 O HOH M 229 1555 1555 2.54 CRYST1 110.718 68.927 82.654 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012099 0.00000 CONECT 1 2 3 4 5 CONECT 2 1 CONECT 3 1 CONECT 4 1 CONECT 5 1 6 CONECT 6 5 7 8 9 CONECT 7 6 CONECT 8 6 CONECT 9 6 10 CONECT 10 9 11 CONECT 11 10 12 13 CONECT 12 11 17 CONECT 13 11 14 15 CONECT 14 13 29 CONECT 15 13 16 17 CONECT 16 15 CONECT 17 12 15 18 CONECT 18 17 19 28 CONECT 19 18 20 CONECT 20 19 21 CONECT 21 20 22 28 CONECT 22 21 23 24 CONECT 23 22 1714 CONECT 24 22 25 CONECT 25 24 26 27 CONECT 26 25 CONECT 27 25 28 CONECT 28 18 21 27 CONECT 29 14 CONECT 373 3483 CONECT 393 3483 CONECT 526 3484 CONECT 634 3480 3482 CONECT 690 3483 CONECT 713 3483 CONECT 758 3485 CONECT 778 3485 CONECT 870 3481 CONECT 953 3485 CONECT 976 3485 CONECT 1029 3482 CONECT 1031 3482 CONECT 1046 3480 3482 CONECT 1487 3486 CONECT 1507 3486 CONECT 1714 23 CONECT 1740 1741 1742 1743 1744 CONECT 1741 1740 CONECT 1742 1740 3505 CONECT 1743 1740 CONECT 1744 1740 1745 CONECT 1745 1744 1746 1747 1748 CONECT 1746 1745 CONECT 1747 1745 CONECT 1748 1745 1749 CONECT 1749 1748 1750 CONECT 1750 1749 1751 1752 CONECT 1751 1750 1756 CONECT 1752 1750 1753 1754 CONECT 1753 1752 1768 CONECT 1754 1752 1755 1756 CONECT 1755 1754 CONECT 1756 1751 1754 1757 CONECT 1757 1756 1758 1767 CONECT 1758 1757 1759 CONECT 1759 1758 1760 CONECT 1760 1759 1761 1767 CONECT 1761 1760 1762 1763 CONECT 1762 1761 CONECT 1763 1761 1764 CONECT 1764 1763 1765 1766 CONECT 1765 1764 CONECT 1766 1764 1767 CONECT 1767 1757 1760 1766 CONECT 1768 1753 CONECT 2132 3513 CONECT 2317 3512 CONECT 2373 3509 3510 CONECT 2429 3513 CONECT 2452 3513 CONECT 2768 3510 CONECT 2770 3510 CONECT 2785 3509 3510 CONECT 2805 3507 CONECT 3479 3547 3564 CONECT 3480 634 1046 3541 3548 CONECT 3480 3551 3559 CONECT 3481 870 3540 3554 CONECT 3482 634 1029 1031 1046 CONECT 3482 3552 3563 CONECT 3483 373 393 690 713 CONECT 3484 526 CONECT 3485 758 778 953 976 CONECT 3486 1487 1507 CONECT 3487 3488 3489 CONECT 3488 3487 3490 3491 CONECT 3489 3487 3494 3504 CONECT 3490 3488 CONECT 3491 3488 3492 CONECT 3492 3491 3493 3494 CONECT 3493 3492 CONECT 3494 3489 3492 3495 CONECT 3495 3494 3496 CONECT 3496 3495 3497 3498 CONECT 3497 3496 3499 CONECT 3498 3496 3503 3504 CONECT 3499 3497 3500 3501 CONECT 3500 3499 CONECT 3501 3499 3502 3503 CONECT 3502 3501 CONECT 3503 3498 3501 CONECT 3504 3489 3498 CONECT 3505 1742 3556 CONECT 3506 3576 3596 3597 3601 CONECT 3507 2805 CONECT 3509 2373 2785 3575 3586 CONECT 3509 3592 CONECT 3510 2373 2768 2770 2785 CONECT 3510 3586 3589 3598 CONECT 3512 2317 CONECT 3513 2132 2429 2452 CONECT 3514 3515 3516 CONECT 3515 3514 3517 3518 CONECT 3516 3514 3521 3531 CONECT 3517 3515 CONECT 3518 3515 3519 CONECT 3519 3518 3520 3521 CONECT 3520 3519 CONECT 3521 3516 3519 3522 CONECT 3522 3521 3523 CONECT 3523 3522 3524 3525 CONECT 3524 3523 3526 CONECT 3525 3523 3530 3531 CONECT 3526 3524 3527 3528 CONECT 3527 3526 CONECT 3528 3526 3529 3530 CONECT 3529 3528 CONECT 3530 3525 3528 CONECT 3531 3516 3525 CONECT 3540 3481 CONECT 3541 3480 CONECT 3547 3479 CONECT 3548 3480 CONECT 3551 3480 CONECT 3552 3482 CONECT 3554 3481 CONECT 3556 3505 CONECT 3559 3480 CONECT 3563 3482 CONECT 3564 3479 CONECT 3575 3509 CONECT 3576 3506 CONECT 3586 3509 3510 CONECT 3589 3510 CONECT 3592 3509 CONECT 3596 3506 CONECT 3597 3506 CONECT 3598 3510 CONECT 3601 3506 MASTER 358 0 21 0 0 0 0 6 3600 2 159 14 END