HEADER VIRAL PROTEIN 25-NOV-24 9EIB TITLE STRUCTURE OF MYROIDES ODORATUS PROPHAGE ANTI-THOERIS 2 (MODTAD2) IN TITLE 2 COMPLEX WITH HISADPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPHAGE ANTI-THOERIS 2 (MODTAD2); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYROIDES ODORATUS; SOURCE 3 ORGANISM_TAXID: 256; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-THOERIS, IMMUNE EVASION, VIRAL SPONGE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.B.CHANG,P.J.KRANZUSCH REVDAT 3 25-JUN-25 9EIB 1 JRNL REVDAT 2 04-JUN-25 9EIB 1 JRNL REVDAT 1 16-APR-25 9EIB 0 JRNL AUTH D.SABONIS,C.AVRAHAM,R.B.CHANG,A.LU,E.HERBST,A.SILANSKAS, JRNL AUTH 2 D.VILUTIS,A.LEAVITT,E.YIRMIYA,H.C.TOYODA,A.RUKSENAITE, JRNL AUTH 3 M.ZAREMBA,I.OSTERMAN,G.AMITAI,P.J.KRANZUSCH,R.SOREK, JRNL AUTH 4 G.TAMULAITIENE JRNL TITL TIR DOMAINS PRODUCE HISTIDINE-ADPR AS AN IMMUNE SIGNAL IN JRNL TITL 2 BACTERIA. JRNL REF NATURE V. 642 467 2025 JRNL REFN ESSN 1476-4687 JRNL PMID 40307559 JRNL DOI 10.1038/S41586-025-08930-2 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 70.5 REMARK 3 NUMBER OF REFLECTIONS : 16636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3400 - 3.0300 1.00 3950 207 0.1819 0.2002 REMARK 3 2 3.0300 - 2.4100 0.99 3720 225 0.2199 0.2641 REMARK 3 3 2.4100 - 2.1000 0.85 3158 175 0.2312 0.2574 REMARK 3 4 2.1000 - 1.9100 0.68 2507 131 0.2443 0.2943 REMARK 3 5 1.9100 - 1.7700 0.49 1790 87 0.2618 0.3161 REMARK 3 6 1.7700 - 1.6700 0.18 656 30 0.3136 0.4062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.177 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1516 REMARK 3 ANGLE : 1.011 2071 REMARK 3 CHIRALITY : 0.057 222 REMARK 3 PLANARITY : 0.006 250 REMARK 3 DIHEDRAL : 16.382 524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0416 -0.8272 25.6828 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2696 REMARK 3 T33: 0.5410 T12: 0.0538 REMARK 3 T13: -0.0537 T23: -0.2477 REMARK 3 L TENSOR REMARK 3 L11: 0.0507 L22: 0.2956 REMARK 3 L33: 0.3918 L12: -0.1172 REMARK 3 L13: -0.1271 L23: 0.3369 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.0254 S13: 0.0740 REMARK 3 S21: -0.0068 S22: -0.0501 S23: 0.1594 REMARK 3 S31: -0.1152 S32: -0.0830 S33: 0.0513 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0555 -4.2855 31.4106 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.2196 REMARK 3 T33: 0.3925 T12: 0.0064 REMARK 3 T13: 0.0113 T23: -0.2123 REMARK 3 L TENSOR REMARK 3 L11: 0.0392 L22: 1.9159 REMARK 3 L33: 0.7148 L12: 0.0318 REMARK 3 L13: -0.0929 L23: 0.1835 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.0015 S13: 0.0277 REMARK 3 S21: 0.1670 S22: -0.0452 S23: 0.1682 REMARK 3 S31: 0.0033 S32: -0.1101 S33: -0.1867 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2172 4.9337 8.4518 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.4087 REMARK 3 T33: 0.5489 T12: 0.0226 REMARK 3 T13: -0.1956 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 4.9461 L22: 0.0703 REMARK 3 L33: 0.1742 L12: -0.5857 REMARK 3 L13: -0.8701 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.1131 S13: 0.2726 REMARK 3 S21: -0.1319 S22: -0.0547 S23: -0.1207 REMARK 3 S31: -0.1895 S32: 0.3752 S33: 0.0106 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6867 6.2873 7.7289 REMARK 3 T TENSOR REMARK 3 T11: 0.4893 T22: 0.3419 REMARK 3 T33: 0.5585 T12: -0.0677 REMARK 3 T13: -0.2195 T23: 0.1406 REMARK 3 L TENSOR REMARK 3 L11: 9.4635 L22: 4.4732 REMARK 3 L33: 3.3182 L12: -0.9673 REMARK 3 L13: -5.4144 L23: 0.6286 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.3652 S13: 0.8153 REMARK 3 S21: -0.3904 S22: -0.1147 S23: -0.2155 REMARK 3 S31: -0.6045 S32: 0.3865 S33: 0.0081 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4346 -4.9957 26.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.2473 REMARK 3 T33: 0.3417 T12: 0.0027 REMARK 3 T13: -0.0269 T23: -0.2103 REMARK 3 L TENSOR REMARK 3 L11: 0.4595 L22: 0.9591 REMARK 3 L33: 0.1998 L12: 0.1878 REMARK 3 L13: -0.0688 L23: 0.1314 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: -0.0684 S13: 0.0898 REMARK 3 S21: 0.0140 S22: -0.0950 S23: 0.1988 REMARK 3 S31: 0.0253 S32: -0.1711 S33: -0.2112 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4885 -25.2108 24.6597 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.1956 REMARK 3 T33: 0.0420 T12: 0.0427 REMARK 3 T13: 0.0404 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 3.3814 L22: 4.0762 REMARK 3 L33: 4.1685 L12: 1.6755 REMARK 3 L13: 0.3656 L23: 0.7166 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.2061 S13: -0.0892 REMARK 3 S21: 0.3110 S22: 0.0670 S23: -0.1849 REMARK 3 S31: 0.0812 S32: 0.3658 S33: -0.1446 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9853 -24.7316 30.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.1994 REMARK 3 T33: 0.1079 T12: -0.0074 REMARK 3 T13: 0.0682 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 0.6505 L22: 2.5505 REMARK 3 L33: 2.7457 L12: -0.6113 REMARK 3 L13: -0.6575 L23: 1.6889 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.2051 S13: 0.0872 REMARK 3 S21: 0.2677 S22: 0.0237 S23: 0.0072 REMARK 3 S31: 0.1246 S32: 0.1475 S33: -0.0260 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1338 -31.4430 8.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.3833 REMARK 3 T33: 0.3802 T12: -0.0365 REMARK 3 T13: -0.1367 T23: -0.1455 REMARK 3 L TENSOR REMARK 3 L11: 4.5355 L22: 0.0100 REMARK 3 L33: 1.3868 L12: -0.2205 REMARK 3 L13: 2.5089 L23: -0.1209 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: 0.0917 S13: -0.3821 REMARK 3 S21: -0.0017 S22: -0.0414 S23: 0.1828 REMARK 3 S31: 0.3354 S32: -0.3607 S33: -0.1375 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0225 -21.4614 25.5157 REMARK 3 T TENSOR REMARK 3 T11: 0.1980 T22: 0.2185 REMARK 3 T33: 0.1627 T12: -0.0080 REMARK 3 T13: 0.0539 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 1.2927 L22: 2.0659 REMARK 3 L33: 0.9255 L12: 0.1922 REMARK 3 L13: 0.8454 L23: 0.9987 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.1492 S13: 0.0884 REMARK 3 S21: 0.0828 S22: -0.0472 S23: 0.3666 REMARK 3 S31: -0.0482 S32: -0.1118 S33: -0.0382 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8206 -23.7535 31.4316 REMARK 3 T TENSOR REMARK 3 T11: 0.2880 T22: 0.2330 REMARK 3 T33: 0.0990 T12: 0.0060 REMARK 3 T13: 0.0219 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 4.0113 L22: 4.6580 REMARK 3 L33: 4.2612 L12: 1.5188 REMARK 3 L13: 0.0464 L23: 1.4283 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.2508 S13: -0.1771 REMARK 3 S21: 0.3633 S22: -0.0627 S23: -0.0740 REMARK 3 S31: 0.3358 S32: 0.0007 S33: 0.1370 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1000290535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16652 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.668 REMARK 200 RESOLUTION RANGE LOW (A) : 30.341 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CH3COONA PH 4.4 AND 24% PEG REMARK 280 -4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.03950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.03950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.03950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.03950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.03950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.03950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.03950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 273 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 279 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 151 O HOH A 154 1.61 REMARK 500 O HOH A 159 O HOH A 163 1.74 REMARK 500 O HOH B 266 O HOH B 272 1.82 REMARK 500 O HOH A 103 O HOH A 104 1.92 REMARK 500 O HOH B 271 O HOH B 282 1.93 REMARK 500 O HOH A 160 O HOH A 166 2.00 REMARK 500 O HOH B 212 O HOH B 275 2.02 REMARK 500 O HOH B 202 O HOH B 221 2.05 REMARK 500 O HOH B 286 O HOH B 288 2.10 REMARK 500 O HOH A 172 O HOH A 173 2.10 REMARK 500 OE1 GLU B 15 O HOH B 201 2.12 REMARK 500 O HOH B 212 O HOH B 231 2.12 REMARK 500 O HOH B 209 O HOH B 236 2.12 REMARK 500 O PRO A 74 O HOH A 101 2.13 REMARK 500 OE2 GLU A 15 O HOH A 102 2.15 REMARK 500 O SER B 41 O HOH B 202 2.17 REMARK 500 O HOH A 156 O HOH A 168 2.17 REMARK 500 O HOH A 158 O HOH A 167 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 113 O HOH A 113 8556 1.53 REMARK 500 O HOH A 139 O HOH A 161 10555 1.89 REMARK 500 O HOH B 210 O HOH B 242 5554 1.94 REMARK 500 O HOH A 101 O HOH A 101 10555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 289 DISTANCE = 5.95 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8R66 RELATED DB: PDB REMARK 900 MACRO AMYLO WITH HIS-ADPR REMARK 900 RELATED ID: 8V3E RELATED DB: PDB REMARK 900 MODTAD2 APO DBREF 9EIB A 0 88 PDB 9EIB 9EIB 0 88 DBREF 9EIB B 0 88 PDB 9EIB 9EIB 0 88 SEQRES 1 A 89 SER MET ASP SER LEU ASN PHE GLY LYS ALA LEU GLU ALA SEQRES 2 A 89 LEU LYS GLU GLY LYS LYS VAL SER ARG GLU GLY TRP ASN SEQRES 3 A 89 GLY LYS GLY MET PHE ALA TYR TYR VAL PRO GLY GLY VAL SEQRES 4 A 89 TYR LYS SER GLN THR ASP VAL ILE LYS ASN THR PHE GLY SEQRES 5 A 89 GLU GLU VAL LYS TYR ARG PRO TYR LEU ALA LEU LYS THR SEQRES 6 A 89 VAL ASP ASN ASP ILE ALA THR TRP THR PRO SER VAL SER SEQRES 7 A 89 ASP ILE LEU ALA GLU ASP TRP ASN ILE VAL GLU SEQRES 1 B 89 SER MET ASP SER LEU ASN PHE GLY LYS ALA LEU GLU ALA SEQRES 2 B 89 LEU LYS GLU GLY LYS LYS VAL SER ARG GLU GLY TRP ASN SEQRES 3 B 89 GLY LYS GLY MET PHE ALA TYR TYR VAL PRO GLY GLY VAL SEQRES 4 B 89 TYR LYS SER GLN THR ASP VAL ILE LYS ASN THR PHE GLY SEQRES 5 B 89 GLU GLU VAL LYS TYR ARG PRO TYR LEU ALA LEU LYS THR SEQRES 6 B 89 VAL ASP ASN ASP ILE ALA THR TRP THR PRO SER VAL SER SEQRES 7 B 89 ASP ILE LEU ALA GLU ASP TRP ASN ILE VAL GLU HET Y65 B 101 92 HETNAM Y65 (2~{S})-3-[1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R}, HETNAM 2 Y65 3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 3 Y65 BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 Y65 PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4- HETNAM 5 Y65 BIS(OXIDANYL)OXOLAN-2-YL]IMIDAZOL-4-YL]-2-AZANYL- HETNAM 6 Y65 PROPANOIC ACID FORMUL 3 Y65 C21 H30 N8 O15 P2 FORMUL 4 HOH *162(H2 O) HELIX 1 AA1 ASN A 5 GLU A 15 1 11 HELIX 2 AA2 THR A 43 GLY A 51 1 9 HELIX 3 AA3 SER A 75 ALA A 81 1 7 HELIX 4 AA4 ASN B 5 GLU B 15 1 11 HELIX 5 AA5 THR B 43 GLY B 51 1 9 HELIX 6 AA6 SER B 75 ALA B 81 1 7 SHEET 1 AA1 2 LYS A 18 ARG A 21 0 SHEET 2 AA1 2 TRP A 84 VAL A 87 -1 O VAL A 87 N LYS A 18 SHEET 1 AA2 3 PHE A 30 VAL A 34 0 SHEET 2 AA2 3 TYR A 59 LYS A 63 -1 O LYS A 63 N PHE A 30 SHEET 3 AA2 3 ILE A 69 THR A 71 -1 O ALA A 70 N LEU A 62 SHEET 1 AA3 2 GLY A 37 LYS A 40 0 SHEET 2 AA3 2 GLU A 53 TYR A 56 -1 O VAL A 54 N TYR A 39 SHEET 1 AA4 2 LYS B 18 ARG B 21 0 SHEET 2 AA4 2 TRP B 84 VAL B 87 -1 O ASN B 85 N SER B 20 SHEET 1 AA5 3 PHE B 30 VAL B 34 0 SHEET 2 AA5 3 TYR B 59 LYS B 63 -1 O ALA B 61 N TYR B 32 SHEET 3 AA5 3 ILE B 69 THR B 71 -1 O ALA B 70 N LEU B 62 SHEET 1 AA6 2 GLY B 37 LYS B 40 0 SHEET 2 AA6 2 GLU B 53 TYR B 56 -1 O TYR B 56 N GLY B 37 CRYST1 92.692 92.692 78.079 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010788 0.006229 0.000000 0.00000 SCALE2 0.000000 0.012457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012808 0.00000 CONECT 1386 1388 1398 1442 CONECT 1387 1389 1399 1443 CONECT 1388 1386 1390 1468 CONECT 1389 1387 1391 1469 CONECT 1390 1388 1392 1466 CONECT 1391 1389 1393 1467 CONECT 1392 1390 1398 1402 CONECT 1393 1391 1399 1403 CONECT 1394 1404 1460 CONECT 1395 1405 1461 CONECT 1396 1404 1406 1464 CONECT 1397 1405 1407 1465 CONECT 1398 1386 1392 CONECT 1399 1387 1393 CONECT 1400 1404 1408 CONECT 1401 1405 1409 CONECT 1402 1392 1448 CONECT 1403 1393 1449 CONECT 1404 1394 1396 1400 CONECT 1405 1395 1397 1401 CONECT 1406 1396 1408 1462 CONECT 1407 1397 1409 1463 CONECT 1408 1400 1406 1432 CONECT 1409 1401 1407 1433 CONECT 1410 1432 1434 CONECT 1411 1433 1435 CONECT 1412 1414 1418 1434 CONECT 1413 1415 1419 1435 CONECT 1414 1412 1436 1440 CONECT 1415 1413 1437 1441 CONECT 1416 1436 1438 CONECT 1417 1437 1439 CONECT 1418 1412 1432 1438 CONECT 1419 1413 1433 1439 CONECT 1420 1442 1444 CONECT 1421 1443 1445 CONECT 1422 1424 1426 1444 CONECT 1423 1425 1427 1445 CONECT 1424 1422 1442 CONECT 1425 1423 1443 CONECT 1426 1422 1428 CONECT 1427 1423 1429 CONECT 1428 1426 1430 1446 CONECT 1429 1427 1431 1447 CONECT 1430 1428 1470 1472 CONECT 1431 1429 1471 1473 CONECT 1432 1408 1410 1418 CONECT 1433 1409 1411 1419 CONECT 1434 1410 1412 CONECT 1435 1411 1413 CONECT 1436 1414 1416 CONECT 1437 1415 1417 CONECT 1438 1416 1418 CONECT 1439 1417 1419 CONECT 1440 1414 CONECT 1441 1415 CONECT 1442 1386 1420 1424 CONECT 1443 1387 1421 1425 CONECT 1444 1420 1422 CONECT 1445 1421 1423 CONECT 1446 1428 CONECT 1447 1429 CONECT 1448 1402 1474 CONECT 1449 1403 1475 CONECT 1450 1474 CONECT 1451 1475 CONECT 1452 1474 CONECT 1453 1475 CONECT 1454 1474 1476 CONECT 1455 1475 1477 CONECT 1456 1476 CONECT 1457 1477 CONECT 1458 1476 CONECT 1459 1477 CONECT 1460 1394 1476 CONECT 1461 1395 1477 CONECT 1462 1406 CONECT 1463 1407 CONECT 1464 1396 CONECT 1465 1397 CONECT 1466 1390 CONECT 1467 1391 CONECT 1468 1388 CONECT 1469 1389 CONECT 1470 1430 CONECT 1471 1431 CONECT 1472 1430 CONECT 1473 1431 CONECT 1474 1448 1450 1452 1454 CONECT 1475 1449 1451 1453 1455 CONECT 1476 1454 1456 1458 1460 CONECT 1477 1455 1457 1459 1461 MASTER 471 0 1 6 14 0 0 6 1580 2 92 14 END