HEADER REPLICATION 02-DEC-24 9EKB TITLE CRYO-EM STRUCTURE OF APO-FORM HUMAN DNA POLYMERASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE DELTA CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3'-5' EXODEOXYRIBONUCLEASE,DNA POLYMERASE SUBUNIT DELTA COMPND 5 P125; COMPND 6 EC: 2.7.7.7,3.1.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA POLYMERASE DELTA SUBUNIT 2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: DNA POLYMERASE DELTA SUBUNIT P50; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA POLYMERASE DELTA SUBUNIT 3; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: DNA POLYMERASE DELTA SUBUNIT C,DNA POLYMERASE DELTA SUBUNIT COMPND 17 P66,DNA POLYMERASE DELTA SUBUNIT P68; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA POLYMERASE DELTA SUBUNIT 4; COMPND 21 CHAIN: D; COMPND 22 SYNONYM: DNA POLYMERASE DELTA SUBUNIT P12; COMPND 23 ENGINEERED: YES; COMPND 24 OTHER_DETAILS: C-TERMINAL HIS6 TAG WAS ADDED FROM PET20(+) VECTOR BY COMPND 25 INSERTING POLD4 GENE AT NDELI-XHOI DIGESTED SITES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLD1, POLD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-POLD4/1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: POLD2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RP; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGBM-POLD2/3; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: POLD3, KIAA0039; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RP; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PGBM-POLD2/3; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 GENE: POLD4, POLDS; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RP; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PET-POLD4/1 KEYWDS DNA POLYMERASE DELTA, HUMAN, CRYO-EM, REPLICATION EXPDTA ELECTRON MICROSCOPY AUTHOR K.S.MURAKAMI,Y.SHIN REVDAT 3 02-APR-25 9EKB 1 JRNL REVDAT 2 12-MAR-25 9EKB 1 JRNL REVDAT 1 05-FEB-25 9EKB 0 JRNL AUTH Y.SHIN,M.HEDGLIN,K.S.MURAKAMI JRNL TITL CRYO-EM STRUCTURE OF APO-FORM HUMAN DNA POLYMERASE DELTA JRNL TITL 2 ELUCIDATES ITS MINIMAL DNA SYNTHESIS ACTIVITY WITHOUT PCNA. JRNL REF J.BIOL.CHEM. V. 301 08342 2025 JRNL REFN ESSN 1083-351X JRNL PMID 39993528 JRNL DOI 10.1016/J.JBC.2025.108342 REMARK 2 REMARK 2 RESOLUTION. 3.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.650 REMARK 3 NUMBER OF PARTICLES : 114792 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9EKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1000290669. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN DNA POLYMERASE DELTA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.44 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : APO-FORM OF THE HUMAN DNA REMARK 245 POLYMERASE DELTA REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 6915 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 ARG A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 TRP A 23 REMARK 465 ASP A 24 REMARK 465 ASP A 25 REMARK 465 ASP A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 PRO A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 GLN A 33 REMARK 465 PHE A 34 REMARK 465 GLU A 35 REMARK 465 GLU A 36 REMARK 465 ASP A 37 REMARK 465 LEU A 38 REMARK 465 GLY A 68 REMARK 465 GLN A 69 REMARK 465 VAL A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 SER A 73 REMARK 465 GLU A 576 REMARK 465 GLY A 577 REMARK 465 GLY A 578 REMARK 465 GLU A 579 REMARK 465 ASP A 580 REMARK 465 TYR A 581 REMARK 465 THR A 582 REMARK 465 GLY A 583 REMARK 465 VAL A 994 REMARK 465 LEU A 995 REMARK 465 THR A 996 REMARK 465 GLY A 997 REMARK 465 LYS A 998 REMARK 465 VAL A 999 REMARK 465 GLY A 1000 REMARK 465 GLY A 1001 REMARK 465 LEU A 1002 REMARK 465 LEU A 1003 REMARK 465 ALA A 1004 REMARK 465 PHE A 1005 REMARK 465 ALA A 1006 REMARK 465 LYS A 1007 REMARK 465 ARG B 255 REMARK 465 ASP B 256 REMARK 465 SER B 257 REMARK 465 ILE B 258 REMARK 465 ASN B 259 REMARK 465 LYS B 260 REMARK 465 ALA B 261 REMARK 465 LYS B 262 REMARK 465 TYR B 263 REMARK 465 LEU B 264 REMARK 465 THR B 265 REMARK 465 LYS B 266 REMARK 465 LYS B 267 REMARK 465 THR B 268 REMARK 465 GLN B 269 REMARK 465 GLU B 458 REMARK 465 ASP B 459 REMARK 465 ASP B 460 REMARK 465 ASP B 461 REMARK 465 LEU B 462 REMARK 465 GLY B 463 REMARK 465 GLY B 464 REMARK 465 LEU B 465 REMARK 465 GLY B 466 REMARK 465 LEU B 467 REMARK 465 GLY B 468 REMARK 465 PRO B 469 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PRO C 145 REMARK 465 ALA C 146 REMARK 465 GLU C 147 REMARK 465 SER C 148 REMARK 465 SER C 149 REMARK 465 SER C 150 REMARK 465 SER C 151 REMARK 465 SER C 152 REMARK 465 LYS C 153 REMARK 465 LYS C 154 REMARK 465 PHE C 155 REMARK 465 GLU C 156 REMARK 465 GLN C 157 REMARK 465 SER C 158 REMARK 465 HIS C 159 REMARK 465 LEU C 160 REMARK 465 HIS C 161 REMARK 465 MET C 162 REMARK 465 SER C 163 REMARK 465 SER C 164 REMARK 465 GLU C 165 REMARK 465 THR C 166 REMARK 465 GLN C 167 REMARK 465 ALA C 168 REMARK 465 ASN C 169 REMARK 465 ASN C 170 REMARK 465 GLU C 171 REMARK 465 LEU C 172 REMARK 465 THR C 173 REMARK 465 THR C 174 REMARK 465 ASN C 175 REMARK 465 GLY C 176 REMARK 465 HIS C 177 REMARK 465 GLY C 178 REMARK 465 PRO C 179 REMARK 465 PRO C 180 REMARK 465 ALA C 181 REMARK 465 SER C 182 REMARK 465 LYS C 183 REMARK 465 GLN C 184 REMARK 465 VAL C 185 REMARK 465 SER C 186 REMARK 465 GLN C 187 REMARK 465 GLN C 188 REMARK 465 PRO C 189 REMARK 465 LYS C 190 REMARK 465 GLY C 191 REMARK 465 ILE C 192 REMARK 465 MET C 193 REMARK 465 GLY C 194 REMARK 465 MET C 195 REMARK 465 PHE C 196 REMARK 465 ALA C 197 REMARK 465 SER C 198 REMARK 465 LYS C 199 REMARK 465 ALA C 200 REMARK 465 ALA C 201 REMARK 465 ALA C 202 REMARK 465 LYS C 203 REMARK 465 THR C 204 REMARK 465 GLN C 205 REMARK 465 GLU C 206 REMARK 465 THR C 207 REMARK 465 ASN C 208 REMARK 465 LYS C 209 REMARK 465 GLU C 210 REMARK 465 THR C 211 REMARK 465 LYS C 212 REMARK 465 THR C 213 REMARK 465 GLU C 214 REMARK 465 ALA C 215 REMARK 465 LYS C 216 REMARK 465 GLU C 217 REMARK 465 VAL C 218 REMARK 465 THR C 219 REMARK 465 ASN C 220 REMARK 465 ALA C 221 REMARK 465 SER C 222 REMARK 465 ALA C 223 REMARK 465 ALA C 224 REMARK 465 GLY C 225 REMARK 465 ASN C 226 REMARK 465 LYS C 227 REMARK 465 ALA C 228 REMARK 465 PRO C 229 REMARK 465 GLY C 230 REMARK 465 LYS C 231 REMARK 465 GLY C 232 REMARK 465 ASN C 233 REMARK 465 MET C 234 REMARK 465 MET C 235 REMARK 465 SER C 236 REMARK 465 ASN C 237 REMARK 465 PHE C 238 REMARK 465 PHE C 239 REMARK 465 GLY C 240 REMARK 465 LYS C 241 REMARK 465 ALA C 242 REMARK 465 ALA C 243 REMARK 465 MET C 244 REMARK 465 ASN C 245 REMARK 465 LYS C 246 REMARK 465 PHE C 247 REMARK 465 LYS C 248 REMARK 465 VAL C 249 REMARK 465 ASN C 250 REMARK 465 LEU C 251 REMARK 465 ASP C 252 REMARK 465 SER C 253 REMARK 465 GLU C 254 REMARK 465 GLN C 255 REMARK 465 ALA C 256 REMARK 465 VAL C 257 REMARK 465 LYS C 258 REMARK 465 GLU C 259 REMARK 465 GLU C 260 REMARK 465 LYS C 261 REMARK 465 ILE C 262 REMARK 465 VAL C 263 REMARK 465 GLU C 264 REMARK 465 GLN C 265 REMARK 465 PRO C 266 REMARK 465 THR C 267 REMARK 465 VAL C 268 REMARK 465 SER C 269 REMARK 465 VAL C 270 REMARK 465 THR C 271 REMARK 465 GLU C 272 REMARK 465 PRO C 273 REMARK 465 LYS C 274 REMARK 465 LEU C 275 REMARK 465 ALA C 276 REMARK 465 THR C 277 REMARK 465 PRO C 278 REMARK 465 ALA C 279 REMARK 465 GLY C 280 REMARK 465 LEU C 281 REMARK 465 LYS C 282 REMARK 465 LYS C 283 REMARK 465 SER C 284 REMARK 465 SER C 285 REMARK 465 LYS C 286 REMARK 465 LYS C 287 REMARK 465 ALA C 288 REMARK 465 GLU C 289 REMARK 465 PRO C 290 REMARK 465 VAL C 291 REMARK 465 LYS C 292 REMARK 465 VAL C 293 REMARK 465 LEU C 294 REMARK 465 GLN C 295 REMARK 465 LYS C 296 REMARK 465 GLU C 297 REMARK 465 LYS C 298 REMARK 465 LYS C 299 REMARK 465 ARG C 300 REMARK 465 GLY C 301 REMARK 465 LYS C 302 REMARK 465 ARG C 303 REMARK 465 VAL C 304 REMARK 465 ALA C 305 REMARK 465 LEU C 306 REMARK 465 SER C 307 REMARK 465 ASP C 308 REMARK 465 ASP C 309 REMARK 465 GLU C 310 REMARK 465 THR C 311 REMARK 465 LYS C 312 REMARK 465 GLU C 313 REMARK 465 THR C 314 REMARK 465 GLU C 315 REMARK 465 ASN C 316 REMARK 465 MET C 317 REMARK 465 ARG C 318 REMARK 465 LYS C 319 REMARK 465 LYS C 320 REMARK 465 ARG C 321 REMARK 465 ARG C 322 REMARK 465 ARG C 323 REMARK 465 ILE C 324 REMARK 465 LYS C 325 REMARK 465 LEU C 326 REMARK 465 PRO C 327 REMARK 465 GLU C 328 REMARK 465 SER C 329 REMARK 465 ASP C 330 REMARK 465 SER C 331 REMARK 465 SER C 332 REMARK 465 GLU C 333 REMARK 465 ASP C 334 REMARK 465 GLU C 335 REMARK 465 VAL C 336 REMARK 465 PHE C 337 REMARK 465 PRO C 338 REMARK 465 ASP C 339 REMARK 465 SER C 340 REMARK 465 PRO C 341 REMARK 465 GLY C 342 REMARK 465 ALA C 343 REMARK 465 TYR C 344 REMARK 465 GLU C 345 REMARK 465 ALA C 346 REMARK 465 GLU C 347 REMARK 465 SER C 348 REMARK 465 PRO C 349 REMARK 465 SER C 350 REMARK 465 PRO C 351 REMARK 465 PRO C 352 REMARK 465 PRO C 353 REMARK 465 PRO C 354 REMARK 465 PRO C 355 REMARK 465 SER C 356 REMARK 465 PRO C 357 REMARK 465 PRO C 358 REMARK 465 LEU C 359 REMARK 465 GLU C 360 REMARK 465 PRO C 361 REMARK 465 VAL C 362 REMARK 465 PRO C 363 REMARK 465 LYS C 364 REMARK 465 THR C 365 REMARK 465 GLU C 366 REMARK 465 PRO C 367 REMARK 465 GLU C 368 REMARK 465 PRO C 369 REMARK 465 PRO C 370 REMARK 465 SER C 371 REMARK 465 VAL C 372 REMARK 465 LYS C 373 REMARK 465 SER C 374 REMARK 465 SER C 375 REMARK 465 SER C 376 REMARK 465 GLY C 377 REMARK 465 GLU C 378 REMARK 465 ASN C 379 REMARK 465 LYS C 380 REMARK 465 ARG C 381 REMARK 465 LYS C 382 REMARK 465 ARG C 383 REMARK 465 LYS C 384 REMARK 465 ARG C 385 REMARK 465 VAL C 386 REMARK 465 LEU C 387 REMARK 465 LYS C 388 REMARK 465 SER C 389 REMARK 465 LYS C 390 REMARK 465 THR C 391 REMARK 465 TYR C 392 REMARK 465 LEU C 393 REMARK 465 ASP C 394 REMARK 465 GLY C 395 REMARK 465 GLU C 396 REMARK 465 GLY C 397 REMARK 465 CYS C 398 REMARK 465 ILE C 399 REMARK 465 VAL C 400 REMARK 465 THR C 401 REMARK 465 GLU C 402 REMARK 465 LYS C 403 REMARK 465 VAL C 404 REMARK 465 TYR C 405 REMARK 465 GLU C 406 REMARK 465 SER C 407 REMARK 465 GLU C 408 REMARK 465 SER C 409 REMARK 465 CYS C 410 REMARK 465 THR C 411 REMARK 465 ASP C 412 REMARK 465 SER C 413 REMARK 465 GLU C 414 REMARK 465 GLU C 415 REMARK 465 GLU C 416 REMARK 465 LEU C 417 REMARK 465 ASN C 418 REMARK 465 MET C 419 REMARK 465 LYS C 420 REMARK 465 THR C 421 REMARK 465 SER C 422 REMARK 465 SER C 423 REMARK 465 VAL C 424 REMARK 465 HIS C 425 REMARK 465 ARG C 426 REMARK 465 PRO C 427 REMARK 465 PRO C 428 REMARK 465 ALA C 429 REMARK 465 MET C 430 REMARK 465 THR C 431 REMARK 465 VAL C 432 REMARK 465 LYS C 433 REMARK 465 LYS C 434 REMARK 465 GLU C 435 REMARK 465 PRO C 436 REMARK 465 ARG C 437 REMARK 465 GLU C 438 REMARK 465 GLU C 439 REMARK 465 ARG C 440 REMARK 465 LYS C 441 REMARK 465 GLY C 442 REMARK 465 PRO C 443 REMARK 465 LYS C 444 REMARK 465 LYS C 445 REMARK 465 GLY C 446 REMARK 465 THR C 447 REMARK 465 ALA C 448 REMARK 465 ALA C 449 REMARK 465 LEU C 450 REMARK 465 GLY C 451 REMARK 465 LYS C 452 REMARK 465 ALA C 453 REMARK 465 ASN C 454 REMARK 465 ARG C 455 REMARK 465 GLN C 456 REMARK 465 VAL C 457 REMARK 465 SER C 458 REMARK 465 ILE C 459 REMARK 465 THR C 460 REMARK 465 GLY C 461 REMARK 465 PHE C 462 REMARK 465 PHE C 463 REMARK 465 GLN C 464 REMARK 465 ARG C 465 REMARK 465 LYS C 466 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ARG D 3 REMARK 465 LYS D 4 REMARK 465 ARG D 5 REMARK 465 LEU D 6 REMARK 465 ILE D 7 REMARK 465 THR D 8 REMARK 465 ASP D 9 REMARK 465 SER D 10 REMARK 465 TYR D 11 REMARK 465 PRO D 12 REMARK 465 VAL D 13 REMARK 465 VAL D 14 REMARK 465 LYS D 15 REMARK 465 ARG D 16 REMARK 465 ARG D 17 REMARK 465 GLU D 18 REMARK 465 GLY D 19 REMARK 465 PRO D 20 REMARK 465 ALA D 21 REMARK 465 GLY D 22 REMARK 465 HIS D 23 REMARK 465 SER D 24 REMARK 465 LYS D 25 REMARK 465 GLY D 26 REMARK 465 GLU D 27 REMARK 465 LEU D 28 REMARK 465 ALA D 29 REMARK 465 PRO D 30 REMARK 465 GLU D 31 REMARK 465 LEU D 32 REMARK 465 GLY D 33 REMARK 465 GLU D 34 REMARK 465 GLU D 35 REMARK 465 PRO D 36 REMARK 465 GLN D 37 REMARK 465 PRO D 38 REMARK 465 GLU D 108 REMARK 465 HIS D 109 REMARK 465 HIS D 110 REMARK 465 HIS D 111 REMARK 465 HIS D 112 REMARK 465 HIS D 113 REMARK 465 HIS D 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 279 60.68 60.22 REMARK 500 ARG A 358 158.37 66.05 REMARK 500 LEU A 711 73.24 -161.93 REMARK 500 THR A 756 -113.28 42.75 REMARK 500 ASP A 757 53.41 -96.28 REMARK 500 SER A 758 117.25 -162.55 REMARK 500 SER A 788 172.64 69.06 REMARK 500 LYS A 796 -176.85 -170.30 REMARK 500 SER A 805 -168.40 -162.19 REMARK 500 GLU A 830 -82.05 57.82 REMARK 500 LEU A1054 -61.65 -96.27 REMARK 500 LEU B 14 59.00 -95.51 REMARK 500 SER B 112 -169.86 -78.80 REMARK 500 HIS B 115 -97.26 53.61 REMARK 500 LEU B 118 74.33 53.30 REMARK 500 LYS B 125 128.98 -35.81 REMARK 500 ASP B 137 -168.83 -103.73 REMARK 500 ASP B 180 -169.14 62.36 REMARK 500 TYR B 388 -31.54 -130.81 REMARK 500 ASP B 420 60.92 60.73 REMARK 500 GLU D 79 70.97 53.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1012 SG REMARK 620 2 CYS A1015 SG 92.6 REMARK 620 3 CYS A1026 SG 128.2 86.1 REMARK 620 4 CYS A1029 SG 109.0 110.1 120.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1202 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1058 SG REMARK 620 2 SF4 A1202 S1 137.9 REMARK 620 3 SF4 A1202 S2 64.1 104.2 REMARK 620 4 SF4 A1202 S4 117.8 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1202 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1061 SG REMARK 620 2 SF4 A1202 S1 73.0 REMARK 620 3 SF4 A1202 S2 151.0 104.2 REMARK 620 4 SF4 A1202 S3 104.6 104.2 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1202 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1071 SG REMARK 620 2 SF4 A1202 S2 99.6 REMARK 620 3 SF4 A1202 S3 71.1 104.1 REMARK 620 4 SF4 A1202 S4 156.2 104.2 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1202 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1076 SG REMARK 620 2 SF4 A1202 S1 109.9 REMARK 620 3 SF4 A1202 S3 145.3 104.1 REMARK 620 4 SF4 A1202 S4 61.3 104.1 104.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-48117 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF APO-FORM HUMAN DNA POLYMERASE DELTA DBREF 9EKB A 1 1107 UNP P28340 DPOD1_HUMAN 1 1107 DBREF 9EKB B 1 469 UNP P49005 DPOD2_HUMAN 1 469 DBREF 9EKB C 1 466 UNP Q15054 DPOD3_HUMAN 1 466 DBREF 9EKB D 1 107 UNP Q9HCU8 DPOD4_HUMAN 1 107 SEQADV 9EKB GLU D 108 UNP Q9HCU8 EXPRESSION TAG SEQADV 9EKB HIS D 109 UNP Q9HCU8 EXPRESSION TAG SEQADV 9EKB HIS D 110 UNP Q9HCU8 EXPRESSION TAG SEQADV 9EKB HIS D 111 UNP Q9HCU8 EXPRESSION TAG SEQADV 9EKB HIS D 112 UNP Q9HCU8 EXPRESSION TAG SEQADV 9EKB HIS D 113 UNP Q9HCU8 EXPRESSION TAG SEQADV 9EKB HIS D 114 UNP Q9HCU8 EXPRESSION TAG SEQRES 1 A 1107 MET ASP GLY LYS ARG ARG PRO GLY PRO GLY PRO GLY VAL SEQRES 2 A 1107 PRO PRO LYS ARG ALA ARG GLY GLY LEU TRP ASP ASP ASP SEQRES 3 A 1107 ASP ALA PRO ARG PRO SER GLN PHE GLU GLU ASP LEU ALA SEQRES 4 A 1107 LEU MET GLU GLU MET GLU ALA GLU HIS ARG LEU GLN GLU SEQRES 5 A 1107 GLN GLU GLU GLU GLU LEU GLN SER VAL LEU GLU GLY VAL SEQRES 6 A 1107 ALA ASP GLY GLN VAL PRO PRO SER ALA ILE ASP PRO ARG SEQRES 7 A 1107 TRP LEU ARG PRO THR PRO PRO ALA LEU ASP PRO GLN THR SEQRES 8 A 1107 GLU PRO LEU ILE PHE GLN GLN LEU GLU ILE ASP HIS TYR SEQRES 9 A 1107 VAL GLY PRO ALA GLN PRO VAL PRO GLY GLY PRO PRO PRO SEQRES 10 A 1107 SER ARG GLY SER VAL PRO VAL LEU ARG ALA PHE GLY VAL SEQRES 11 A 1107 THR ASP GLU GLY PHE SER VAL CYS CYS HIS ILE HIS GLY SEQRES 12 A 1107 PHE ALA PRO TYR PHE TYR THR PRO ALA PRO PRO GLY PHE SEQRES 13 A 1107 GLY PRO GLU HIS MET GLY ASP LEU GLN ARG GLU LEU ASN SEQRES 14 A 1107 LEU ALA ILE SER ARG ASP SER ARG GLY GLY ARG GLU LEU SEQRES 15 A 1107 THR GLY PRO ALA VAL LEU ALA VAL GLU LEU CYS SER ARG SEQRES 16 A 1107 GLU SER MET PHE GLY TYR HIS GLY HIS GLY PRO SER PRO SEQRES 17 A 1107 PHE LEU ARG ILE THR VAL ALA LEU PRO ARG LEU VAL ALA SEQRES 18 A 1107 PRO ALA ARG ARG LEU LEU GLU GLN GLY ILE ARG VAL ALA SEQRES 19 A 1107 GLY LEU GLY THR PRO SER PHE ALA PRO TYR GLU ALA ASN SEQRES 20 A 1107 VAL ASP PHE GLU ILE ARG PHE MET VAL ASP THR ASP ILE SEQRES 21 A 1107 VAL GLY CYS ASN TRP LEU GLU LEU PRO ALA GLY LYS TYR SEQRES 22 A 1107 ALA LEU ARG LEU LYS GLU LYS ALA THR GLN CYS GLN LEU SEQRES 23 A 1107 GLU ALA ASP VAL LEU TRP SER ASP VAL VAL SER HIS PRO SEQRES 24 A 1107 PRO GLU GLY PRO TRP GLN ARG ILE ALA PRO LEU ARG VAL SEQRES 25 A 1107 LEU SER PHE ASP ILE GLU CYS ALA GLY ARG LYS GLY ILE SEQRES 26 A 1107 PHE PRO GLU PRO GLU ARG ASP PRO VAL ILE GLN ILE CYS SEQRES 27 A 1107 SER LEU GLY LEU ARG TRP GLY GLU PRO GLU PRO PHE LEU SEQRES 28 A 1107 ARG LEU ALA LEU THR LEU ARG PRO CYS ALA PRO ILE LEU SEQRES 29 A 1107 GLY ALA LYS VAL GLN SER TYR GLU LYS GLU GLU ASP LEU SEQRES 30 A 1107 LEU GLN ALA TRP SER THR PHE ILE ARG ILE MET ASP PRO SEQRES 31 A 1107 ASP VAL ILE THR GLY TYR ASN ILE GLN ASN PHE ASP LEU SEQRES 32 A 1107 PRO TYR LEU ILE SER ARG ALA GLN THR LEU LYS VAL GLN SEQRES 33 A 1107 THR PHE PRO PHE LEU GLY ARG VAL ALA GLY LEU CYS SER SEQRES 34 A 1107 ASN ILE ARG ASP SER SER PHE GLN SER LYS GLN THR GLY SEQRES 35 A 1107 ARG ARG ASP THR LYS VAL VAL SER MET VAL GLY ARG VAL SEQRES 36 A 1107 GLN MET ASP MET LEU GLN VAL LEU LEU ARG GLU TYR LYS SEQRES 37 A 1107 LEU ARG SER TYR THR LEU ASN ALA VAL SER PHE HIS PHE SEQRES 38 A 1107 LEU GLY GLU GLN LYS GLU ASP VAL GLN HIS SER ILE ILE SEQRES 39 A 1107 THR ASP LEU GLN ASN GLY ASN ASP GLN THR ARG ARG ARG SEQRES 40 A 1107 LEU ALA VAL TYR CYS LEU LYS ASP ALA TYR LEU PRO LEU SEQRES 41 A 1107 ARG LEU LEU GLU ARG LEU MET VAL LEU VAL ASN ALA VAL SEQRES 42 A 1107 GLU MET ALA ARG VAL THR GLY VAL PRO LEU SER TYR LEU SEQRES 43 A 1107 LEU SER ARG GLY GLN GLN VAL LYS VAL VAL SER GLN LEU SEQRES 44 A 1107 LEU ARG GLN ALA MET HIS GLU GLY LEU LEU MET PRO VAL SEQRES 45 A 1107 VAL LYS SER GLU GLY GLY GLU ASP TYR THR GLY ALA THR SEQRES 46 A 1107 VAL ILE GLU PRO LEU LYS GLY TYR TYR ASP VAL PRO ILE SEQRES 47 A 1107 ALA THR LEU ASP PHE SER SER LEU TYR PRO SER ILE MET SEQRES 48 A 1107 MET ALA HIS ASN LEU CYS TYR THR THR LEU LEU ARG PRO SEQRES 49 A 1107 GLY THR ALA GLN LYS LEU GLY LEU THR GLU ASP GLN PHE SEQRES 50 A 1107 ILE ARG THR PRO THR GLY ASP GLU PHE VAL LYS THR SER SEQRES 51 A 1107 VAL ARG LYS GLY LEU LEU PRO GLN ILE LEU GLU ASN LEU SEQRES 52 A 1107 LEU SER ALA ARG LYS ARG ALA LYS ALA GLU LEU ALA LYS SEQRES 53 A 1107 GLU THR ASP PRO LEU ARG ARG GLN VAL LEU ASP GLY ARG SEQRES 54 A 1107 GLN LEU ALA LEU LYS VAL SER ALA ASN SER VAL TYR GLY SEQRES 55 A 1107 PHE THR GLY ALA GLN VAL GLY LYS LEU PRO CYS LEU GLU SEQRES 56 A 1107 ILE SER GLN SER VAL THR GLY PHE GLY ARG GLN MET ILE SEQRES 57 A 1107 GLU LYS THR LYS GLN LEU VAL GLU SER LYS TYR THR VAL SEQRES 58 A 1107 GLU ASN GLY TYR SER THR SER ALA LYS VAL VAL TYR GLY SEQRES 59 A 1107 ASP THR ASP SER VAL MET CYS ARG PHE GLY VAL SER SER SEQRES 60 A 1107 VAL ALA GLU ALA MET ALA LEU GLY ARG GLU ALA ALA ASP SEQRES 61 A 1107 TRP VAL SER GLY HIS PHE PRO SER PRO ILE ARG LEU GLU SEQRES 62 A 1107 PHE GLU LYS VAL TYR PHE PRO TYR LEU LEU ILE SER LYS SEQRES 63 A 1107 LYS ARG TYR ALA GLY LEU LEU PHE SER SER ARG PRO ASP SEQRES 64 A 1107 ALA HIS ASP ARG MET ASP CYS LYS GLY LEU GLU ALA VAL SEQRES 65 A 1107 ARG ARG ASP ASN CYS PRO LEU VAL ALA ASN LEU VAL THR SEQRES 66 A 1107 ALA SER LEU ARG ARG LEU LEU ILE ASP ARG ASP PRO GLU SEQRES 67 A 1107 GLY ALA VAL ALA HIS ALA GLN ASP VAL ILE SER ASP LEU SEQRES 68 A 1107 LEU CYS ASN ARG ILE ASP ILE SER GLN LEU VAL ILE THR SEQRES 69 A 1107 LYS GLU LEU THR ARG ALA ALA SER ASP TYR ALA GLY LYS SEQRES 70 A 1107 GLN ALA HIS VAL GLU LEU ALA GLU ARG MET ARG LYS ARG SEQRES 71 A 1107 ASP PRO GLY SER ALA PRO SER LEU GLY ASP ARG VAL PRO SEQRES 72 A 1107 TYR VAL ILE ILE SER ALA ALA LYS GLY VAL ALA ALA TYR SEQRES 73 A 1107 MET LYS SER GLU ASP PRO LEU PHE VAL LEU GLU HIS SER SEQRES 74 A 1107 LEU PRO ILE ASP THR GLN TYR TYR LEU GLU GLN GLN LEU SEQRES 75 A 1107 ALA LYS PRO LEU LEU ARG ILE PHE GLU PRO ILE LEU GLY SEQRES 76 A 1107 GLU GLY ARG ALA GLU ALA VAL LEU LEU ARG GLY ASP HIS SEQRES 77 A 1107 THR ARG CYS LYS THR VAL LEU THR GLY LYS VAL GLY GLY SEQRES 78 A 1107 LEU LEU ALA PHE ALA LYS ARG ARG ASN CYS CYS ILE GLY SEQRES 79 A 1107 CYS ARG THR VAL LEU SER HIS GLN GLY ALA VAL CYS GLU SEQRES 80 A 1107 PHE CYS GLN PRO ARG GLU SER GLU LEU TYR GLN LYS GLU SEQRES 81 A 1107 VAL SER HIS LEU ASN ALA LEU GLU GLU ARG PHE SER ARG SEQRES 82 A 1107 LEU TRP THR GLN CYS GLN ARG CYS GLN GLY SER LEU HIS SEQRES 83 A 1107 GLU ASP VAL ILE CYS THR SER ARG ASP CYS PRO ILE PHE SEQRES 84 A 1107 TYR MET ARG LYS LYS VAL ARG LYS ASP LEU GLU ASP GLN SEQRES 85 A 1107 GLU GLN LEU LEU ARG ARG PHE GLY PRO PRO GLY PRO GLU SEQRES 86 A 1107 ALA TRP SEQRES 1 B 469 MET PHE SER GLU GLN ALA ALA GLN ARG ALA HIS THR LEU SEQRES 2 B 469 LEU SER PRO PRO SER ALA ASN ASN ALA THR PHE ALA ARG SEQRES 3 B 469 VAL PRO VAL ALA THR TYR THR ASN SER SER GLN PRO PHE SEQRES 4 B 469 ARG LEU GLY GLU ARG SER PHE SER ARG GLN TYR ALA HIS SEQRES 5 B 469 ILE TYR ALA THR ARG LEU ILE GLN MET ARG PRO PHE LEU SEQRES 6 B 469 GLU ASN ARG ALA GLN GLN HIS TRP GLY SER GLY VAL GLY SEQRES 7 B 469 VAL LYS LYS LEU CYS GLU LEU GLN PRO GLU GLU LYS CYS SEQRES 8 B 469 CYS VAL VAL GLY THR LEU PHE LYS ALA MET PRO LEU GLN SEQRES 9 B 469 PRO SER ILE LEU ARG GLU VAL SER GLU GLU HIS ASN LEU SEQRES 10 B 469 LEU PRO GLN PRO PRO ARG SER LYS TYR ILE HIS PRO ASP SEQRES 11 B 469 ASP GLU LEU VAL LEU GLU ASP GLU LEU GLN ARG ILE LYS SEQRES 12 B 469 LEU LYS GLY THR ILE ASP VAL SER LYS LEU VAL THR GLY SEQRES 13 B 469 THR VAL LEU ALA VAL PHE GLY SER VAL ARG ASP ASP GLY SEQRES 14 B 469 LYS PHE LEU VAL GLU ASP TYR CYS PHE ALA ASP LEU ALA SEQRES 15 B 469 PRO GLN LYS PRO ALA PRO PRO LEU ASP THR ASP ARG PHE SEQRES 16 B 469 VAL LEU LEU VAL SER GLY LEU GLY LEU GLY GLY GLY GLY SEQRES 17 B 469 GLY GLU SER LEU LEU GLY THR GLN LEU LEU VAL ASP VAL SEQRES 18 B 469 VAL THR GLY GLN LEU GLY ASP GLU GLY GLU GLN CYS SER SEQRES 19 B 469 ALA ALA HIS VAL SER ARG VAL ILE LEU ALA GLY ASN LEU SEQRES 20 B 469 LEU SER HIS SER THR GLN SER ARG ASP SER ILE ASN LYS SEQRES 21 B 469 ALA LYS TYR LEU THR LYS LYS THR GLN ALA ALA SER VAL SEQRES 22 B 469 GLU ALA VAL LYS MET LEU ASP GLU ILE LEU LEU GLN LEU SEQRES 23 B 469 SER ALA SER VAL PRO VAL ASP VAL MET PRO GLY GLU PHE SEQRES 24 B 469 ASP PRO THR ASN TYR THR LEU PRO GLN GLN PRO LEU HIS SEQRES 25 B 469 PRO CYS MET PHE PRO LEU ALA THR ALA TYR SER THR LEU SEQRES 26 B 469 GLN LEU VAL THR ASN PRO TYR GLN ALA THR ILE ASP GLY SEQRES 27 B 469 VAL ARG PHE LEU GLY THR SER GLY GLN ASN VAL SER ASP SEQRES 28 B 469 ILE PHE ARG TYR SER SER MET GLU ASP HIS LEU GLU ILE SEQRES 29 B 469 LEU GLU TRP THR LEU ARG VAL ARG HIS ILE SER PRO THR SEQRES 30 B 469 ALA PRO ASP THR LEU GLY CYS TYR PRO PHE TYR LYS THR SEQRES 31 B 469 ASP PRO PHE ILE PHE PRO GLU CYS PRO HIS VAL TYR PHE SEQRES 32 B 469 CYS GLY ASN THR PRO SER PHE GLY SER LYS ILE ILE ARG SEQRES 33 B 469 GLY PRO GLU ASP GLN THR VAL LEU LEU VAL THR VAL PRO SEQRES 34 B 469 ASP PHE SER ALA THR GLN THR ALA CYS LEU VAL ASN LEU SEQRES 35 B 469 ARG SER LEU ALA CYS GLN PRO ILE SER PHE SER GLY PHE SEQRES 36 B 469 GLY ALA GLU ASP ASP ASP LEU GLY GLY LEU GLY LEU GLY SEQRES 37 B 469 PRO SEQRES 1 C 466 MET ALA ASP GLN LEU TYR LEU GLU ASN ILE ASP GLU PHE SEQRES 2 C 466 VAL THR ASP GLN ASN LYS ILE VAL THR TYR LYS TRP LEU SEQRES 3 C 466 SER TYR THR LEU GLY VAL HIS VAL ASN GLN ALA LYS GLN SEQRES 4 C 466 MET LEU TYR ASP TYR VAL GLU ARG LYS ARG LYS GLU ASN SEQRES 5 C 466 SER GLY ALA GLN LEU HIS VAL THR TYR LEU VAL SER GLY SEQRES 6 C 466 SER LEU ILE GLN ASN GLY HIS SER CYS HIS LYS VAL ALA SEQRES 7 C 466 VAL VAL ARG GLU ASP LYS LEU GLU ALA VAL LYS SER LYS SEQRES 8 C 466 LEU ALA VAL THR ALA SER ILE HIS VAL TYR SER ILE GLN SEQRES 9 C 466 LYS ALA MET LEU LYS ASP SER GLY PRO LEU PHE ASN THR SEQRES 10 C 466 ASP TYR ASP ILE LEU LYS SER ASN LEU GLN ASN CYS SER SEQRES 11 C 466 LYS PHE SER ALA ILE GLN CYS ALA ALA ALA VAL PRO ARG SEQRES 12 C 466 ALA PRO ALA GLU SER SER SER SER SER LYS LYS PHE GLU SEQRES 13 C 466 GLN SER HIS LEU HIS MET SER SER GLU THR GLN ALA ASN SEQRES 14 C 466 ASN GLU LEU THR THR ASN GLY HIS GLY PRO PRO ALA SER SEQRES 15 C 466 LYS GLN VAL SER GLN GLN PRO LYS GLY ILE MET GLY MET SEQRES 16 C 466 PHE ALA SER LYS ALA ALA ALA LYS THR GLN GLU THR ASN SEQRES 17 C 466 LYS GLU THR LYS THR GLU ALA LYS GLU VAL THR ASN ALA SEQRES 18 C 466 SER ALA ALA GLY ASN LYS ALA PRO GLY LYS GLY ASN MET SEQRES 19 C 466 MET SER ASN PHE PHE GLY LYS ALA ALA MET ASN LYS PHE SEQRES 20 C 466 LYS VAL ASN LEU ASP SER GLU GLN ALA VAL LYS GLU GLU SEQRES 21 C 466 LYS ILE VAL GLU GLN PRO THR VAL SER VAL THR GLU PRO SEQRES 22 C 466 LYS LEU ALA THR PRO ALA GLY LEU LYS LYS SER SER LYS SEQRES 23 C 466 LYS ALA GLU PRO VAL LYS VAL LEU GLN LYS GLU LYS LYS SEQRES 24 C 466 ARG GLY LYS ARG VAL ALA LEU SER ASP ASP GLU THR LYS SEQRES 25 C 466 GLU THR GLU ASN MET ARG LYS LYS ARG ARG ARG ILE LYS SEQRES 26 C 466 LEU PRO GLU SER ASP SER SER GLU ASP GLU VAL PHE PRO SEQRES 27 C 466 ASP SER PRO GLY ALA TYR GLU ALA GLU SER PRO SER PRO SEQRES 28 C 466 PRO PRO PRO PRO SER PRO PRO LEU GLU PRO VAL PRO LYS SEQRES 29 C 466 THR GLU PRO GLU PRO PRO SER VAL LYS SER SER SER GLY SEQRES 30 C 466 GLU ASN LYS ARG LYS ARG LYS ARG VAL LEU LYS SER LYS SEQRES 31 C 466 THR TYR LEU ASP GLY GLU GLY CYS ILE VAL THR GLU LYS SEQRES 32 C 466 VAL TYR GLU SER GLU SER CYS THR ASP SER GLU GLU GLU SEQRES 33 C 466 LEU ASN MET LYS THR SER SER VAL HIS ARG PRO PRO ALA SEQRES 34 C 466 MET THR VAL LYS LYS GLU PRO ARG GLU GLU ARG LYS GLY SEQRES 35 C 466 PRO LYS LYS GLY THR ALA ALA LEU GLY LYS ALA ASN ARG SEQRES 36 C 466 GLN VAL SER ILE THR GLY PHE PHE GLN ARG LYS SEQRES 1 D 114 MET GLY ARG LYS ARG LEU ILE THR ASP SER TYR PRO VAL SEQRES 2 D 114 VAL LYS ARG ARG GLU GLY PRO ALA GLY HIS SER LYS GLY SEQRES 3 D 114 GLU LEU ALA PRO GLU LEU GLY GLU GLU PRO GLN PRO ARG SEQRES 4 D 114 ASP GLU GLU GLU ALA GLU LEU GLU LEU LEU ARG GLN PHE SEQRES 5 D 114 ASP LEU ALA TRP GLN TYR GLY PRO CYS THR GLY ILE THR SEQRES 6 D 114 ARG LEU GLN ARG TRP CYS ARG ALA LYS GLN MET GLY LEU SEQRES 7 D 114 GLU PRO PRO PRO GLU VAL TRP GLN VAL LEU LYS THR HIS SEQRES 8 D 114 PRO GLY ASP PRO ARG PHE GLN CYS SER LEU TRP HIS LEU SEQRES 9 D 114 TYR PRO LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A1201 1 HET SF4 A1202 8 HETNAM ZN ZINC ION HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 5 ZN ZN 2+ FORMUL 6 SF4 FE4 S4 HELIX 1 AA1 ALA A 39 GLU A 57 1 19 HELIX 2 AA2 GLY A 157 ASP A 175 1 19 HELIX 3 AA3 LEU A 219 GLN A 229 1 11 HELIX 4 AA4 ASP A 249 ASP A 259 1 11 HELIX 5 AA5 GLY A 302 ARG A 306 5 5 HELIX 6 AA6 LYS A 373 ASP A 389 1 17 HELIX 7 AA7 PHE A 401 LYS A 414 1 14 HELIX 8 AA8 MET A 459 TYR A 467 1 9 HELIX 9 AA9 THR A 473 GLY A 483 1 11 HELIX 10 AB1 GLN A 490 ASN A 499 1 10 HELIX 11 AB2 ASN A 501 MET A 527 1 27 HELIX 12 AB3 MET A 527 THR A 539 1 13 HELIX 13 AB4 LEU A 543 SER A 548 5 6 HELIX 14 AB5 GLN A 551 GLY A 567 1 17 HELIX 15 AB6 SER A 605 HIS A 614 1 10 HELIX 16 AB7 THR A 626 GLY A 631 1 6 HELIX 17 AB8 GLY A 654 ALA A 675 1 22 HELIX 18 AB9 ASP A 679 GLY A 705 1 27 HELIX 19 AC1 CYS A 713 TYR A 739 1 27 HELIX 20 AC2 THR A 740 GLY A 744 5 5 HELIX 21 AC3 SER A 767 GLY A 784 1 18 HELIX 22 AC4 CYS A 837 ILE A 853 1 17 HELIX 23 AC5 ASP A 856 CYS A 873 1 18 HELIX 24 AC6 ASP A 877 VAL A 882 5 6 HELIX 25 AC7 ALA A 890 TYR A 894 5 5 HELIX 26 AC8 GLN A 898 ASP A 911 1 14 HELIX 27 AC9 ALA A 934 MET A 937 5 4 HELIX 28 AD1 ASP A 941 SER A 949 1 9 HELIX 29 AD2 ASP A 953 LEU A 962 1 10 HELIX 30 AD3 LEU A 962 GLY A 975 1 14 HELIX 31 AD4 GLY A 977 ARG A 985 1 9 HELIX 32 AD5 CYS A 1029 PRO A 1031 5 3 HELIX 33 AD6 ARG A 1032 GLY A 1063 1 32 HELIX 34 AD7 CYS A 1076 ARG A 1097 1 22 HELIX 35 AD8 PHE B 2 ALA B 7 1 6 HELIX 36 AD9 SER B 36 ARG B 40 5 5 HELIX 37 AE1 TYR B 50 GLN B 71 1 22 HELIX 38 AE2 LYS B 81 LEU B 85 5 5 HELIX 39 AE3 SER B 106 SER B 112 1 7 HELIX 40 AE4 GLY B 208 THR B 223 1 16 HELIX 41 AE5 ASP B 228 ALA B 236 1 9 HELIX 42 AE6 SER B 249 GLN B 253 5 5 HELIX 43 AE7 ALA B 271 ALA B 288 1 18 HELIX 44 AE8 HIS B 312 PHE B 316 5 5 HELIX 45 AE9 LEU B 318 TYR B 322 5 5 HELIX 46 AF1 GLY B 346 TYR B 355 1 10 HELIX 47 AF2 ASP B 360 VAL B 371 1 12 HELIX 48 AF3 ASP B 430 GLN B 435 1 6 HELIX 49 AF4 GLN C 4 THR C 15 1 12 HELIX 50 AF5 THR C 22 GLY C 31 1 10 HELIX 51 AF6 HIS C 33 ASN C 52 1 20 HELIX 52 AF7 LYS C 84 LEU C 92 1 9 HELIX 53 AF8 SER C 111 ASN C 125 1 15 HELIX 54 AF9 LEU C 126 CYS C 129 5 4 HELIX 55 AG1 ASP D 40 ALA D 55 1 16 HELIX 56 AG2 THR D 65 MET D 76 1 12 HELIX 57 AG3 PRO D 81 HIS D 91 1 11 HELIX 58 AG4 ASP D 94 CYS D 99 1 6 SHEET 1 AA1 7 ALA A 274 LEU A 275 0 SHEET 2 AA1 7 LEU A 286 LEU A 291 -1 O ASP A 289 N ALA A 274 SHEET 3 AA1 7 SER A 136 HIS A 142 1 N HIS A 140 O ALA A 288 SHEET 4 AA1 7 VAL A 122 THR A 131 -1 N GLY A 129 O VAL A 137 SHEET 5 AA1 7 LEU A 94 GLY A 106 -1 N LEU A 99 O PHE A 128 SHEET 6 AA1 7 TRP A 265 LEU A 268 -1 O LEU A 266 N PHE A 96 SHEET 7 AA1 7 VAL A 296 HIS A 298 -1 O VAL A 296 N GLU A 267 SHEET 1 AA2 4 TYR A 147 PRO A 151 0 SHEET 2 AA2 4 SER A 207 VAL A 214 -1 O LEU A 210 N THR A 150 SHEET 3 AA2 4 VAL A 187 SER A 197 -1 N ALA A 189 O THR A 213 SHEET 4 AA2 4 LEU A 568 LEU A 569 1 O LEU A 569 N GLU A 196 SHEET 1 AA3 6 VAL A 368 TYR A 371 0 SHEET 2 AA3 6 LEU A 351 LEU A 357 1 N THR A 356 O GLN A 369 SHEET 3 AA3 6 VAL A 334 ARG A 343 -1 N SER A 339 O LEU A 353 SHEET 4 AA3 6 ARG A 311 CYS A 319 -1 N VAL A 312 O LEU A 342 SHEET 5 AA3 6 VAL A 392 GLY A 395 1 O VAL A 392 N LEU A 313 SHEET 6 AA3 6 VAL A 455 ASP A 458 1 O VAL A 455 N ILE A 393 SHEET 1 AA4 2 ILE A 431 SER A 438 0 SHEET 2 AA4 2 GLY A 442 VAL A 449 -1 O VAL A 448 N ARG A 432 SHEET 1 AA5 7 GLY A 592 TYR A 594 0 SHEET 2 AA5 7 TYR A 801 SER A 805 -1 O TYR A 801 N TYR A 594 SHEET 3 AA5 7 ARG A 808 PHE A 814 -1 O ALA A 810 N LEU A 802 SHEET 4 AA5 7 LEU A 792 TYR A 798 -1 N VAL A 797 O PHE A 814 SHEET 5 AA5 7 ILE A 598 PHE A 603 -1 N ASP A 602 O GLU A 793 SHEET 6 AA5 7 VAL A 759 ARG A 762 -1 O VAL A 759 N LEU A 601 SHEET 7 AA5 7 LYS A 750 GLY A 754 -1 N LYS A 750 O ARG A 762 SHEET 1 AA6 4 GLY A 592 TYR A 594 0 SHEET 2 AA6 4 TYR A 801 SER A 805 -1 O TYR A 801 N TYR A 594 SHEET 3 AA6 4 ARG A 808 PHE A 814 -1 O ALA A 810 N LEU A 802 SHEET 4 AA6 4 MET A 824 CYS A 826 -1 O ASP A 825 N GLY A 811 SHEET 1 AA7 2 PHE A 637 ARG A 639 0 SHEET 2 AA7 2 GLU A 645 VAL A 647 -1 O PHE A 646 N ILE A 638 SHEET 1 AA8 3 ILE A 883 GLU A 886 0 SHEET 2 AA8 3 ARG A 921 ILE A 926 -1 O TYR A 924 N ILE A 883 SHEET 3 AA8 3 SER A 939 GLU A 940 -1 O GLU A 940 N VAL A 925 SHEET 1 AA9 2 PHE B 24 ALA B 25 0 SHEET 2 AA9 2 ILE C 135 GLN C 136 1 O GLN C 136 N PHE B 24 SHEET 1 AB1 6 TYR B 32 ASN B 34 0 SHEET 2 AB1 6 ALA B 334 ILE B 336 -1 O THR B 335 N THR B 33 SHEET 3 AB1 6 VAL B 339 THR B 344 -1 O VAL B 339 N ILE B 336 SHEET 4 AB1 6 VAL B 401 THR B 407 1 O PHE B 403 N LEU B 342 SHEET 5 AB1 6 VAL B 423 PRO B 429 1 O LEU B 424 N TYR B 402 SHEET 6 AB1 6 GLY B 411 ILE B 415 -1 N LYS B 413 O LEU B 425 SHEET 1 AB2 6 CYS B 91 ALA B 100 0 SHEET 2 AB2 6 GLU B 132 GLU B 136 -1 O GLU B 136 N THR B 96 SHEET 3 AB2 6 ARG B 141 GLY B 146 -1 O LEU B 144 N LEU B 133 SHEET 4 AB2 6 PHE B 171 CYS B 177 1 O PHE B 171 N LYS B 145 SHEET 5 AB2 6 VAL B 158 VAL B 165 -1 N PHE B 162 O GLU B 174 SHEET 6 AB2 6 CYS B 91 ALA B 100 -1 N VAL B 93 O VAL B 161 SHEET 1 AB3 9 LEU B 325 LEU B 327 0 SHEET 2 AB3 9 VAL B 292 MET B 295 1 N VAL B 294 O GLN B 326 SHEET 3 AB3 9 VAL B 238 ALA B 244 1 N LEU B 243 O MET B 295 SHEET 4 AB3 9 PHE B 195 VAL B 199 1 N PHE B 195 O SER B 239 SHEET 5 AB3 9 THR B 436 ASN B 441 -1 O CYS B 438 N LEU B 198 SHEET 6 AB3 9 CYS B 447 GLY B 454 -1 O ILE B 450 N ALA B 437 SHEET 7 AB3 9 HIS C 72 VAL C 80 1 O HIS C 75 N SER B 451 SHEET 8 AB3 9 THR C 60 GLN C 69 -1 N VAL C 63 O ALA C 78 SHEET 9 AB3 9 THR C 95 SER C 102 -1 O SER C 102 N THR C 60 LINK SG CYS A1012 ZN ZN A1201 1555 1555 2.31 LINK SG CYS A1015 ZN ZN A1201 1555 1555 2.29 LINK SG CYS A1026 ZN ZN A1201 1555 1555 2.31 LINK SG CYS A1029 ZN ZN A1201 1555 1555 2.31 LINK SG CYS A1058 FE3 SF4 A1202 1555 1555 2.61 LINK SG CYS A1061 FE4 SF4 A1202 1555 1555 2.42 LINK SG CYS A1071 FE1 SF4 A1202 1555 1555 2.26 LINK SG CYS A1076 FE2 SF4 A1202 1555 1555 2.56 CISPEP 1 ALA B 378 PRO B 379 0 -2.69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 742013320 CONECT 743813320 CONECT 751813320 CONECT 754413320 CONECT 779513323 CONECT 782113324 CONECT 789613321 CONECT 793413322 CONECT13320 7420 7438 7518 7544 CONECT13321 7896133261332713328 CONECT13322 7934133251332713328 CONECT13323 7795133251332613328 CONECT13324 7821133251332613327 CONECT13325133221332313324 CONECT13326133211332313324 CONECT13327133211332213324 CONECT13328133211332213323 MASTER 656 0 2 58 58 0 0 613320 4 17 168 END