data_9ELG # _entry.id 9ELG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9ELG pdb_00009elg 10.2210/pdb9elg/pdb WWPDB D_1000290448 ? ? EMDB EMD-48148 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-05-28 ? 2 'EM metadata' 1 0 2025-05-28 ? 3 FSC 1 0 2025-05-28 ? 4 'Half map' 1 0 2025-05-28 1 5 'Half map' 1 0 2025-05-28 2 6 Image 1 0 2025-05-28 ? 7 Mask 1 0 2025-05-28 1 8 'Primary map' 1 0 2025-05-28 ? 9 'Structure model' 1 1 2025-07-16 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 9 'Structure model' 'Data collection' 2 9 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 9 'Structure model' citation 2 9 'Structure model' citation_author 3 9 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 9 'Structure model' '_citation.country' 2 9 'Structure model' '_citation.journal_abbrev' 3 9 'Structure model' '_citation.journal_id_CSD' 4 9 'Structure model' '_citation.journal_id_ISSN' 5 9 'Structure model' '_citation.journal_volume' 6 9 'Structure model' '_citation.page_first' 7 9 'Structure model' '_citation.page_last' 8 9 'Structure model' '_citation.pdbx_database_id_DOI' 9 9 'Structure model' '_citation.pdbx_database_id_PubMed' 10 9 'Structure model' '_citation.title' 11 9 'Structure model' '_citation.year' 12 9 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9ELG _pdbx_database_status.recvd_initial_deposition_date 2024-12-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of SARS-CoV-2 Omicron KP.3.1.1 spike RBD and NTD (local refinement of RBD and NTD)' _pdbx_database_related.db_id EMD-48148 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email andrew@scripps.edu _pdbx_contact_author.name_first Andrew _pdbx_contact_author.name_last Ward _pdbx_contact_author.name_mi B. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7153-3769 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Feng, Z.' 1 0000-0001-5046-9788 'Huang, J.' 2 0000-0001-7624-7390 'Ward, A.B.' 3 0000-0001-7153-3769 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 115941 _citation.page_last 115941 _citation.title 'Structural and functional insights into the evolution of SARS-CoV-2 KP.3.1.1 spike protein.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2025.115941 _citation.pdbx_database_id_PubMed 40618371 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feng, Z.' 1 ? primary 'Huang, J.' 2 ? primary 'Baboo, S.' 3 ? primary 'Diedrich, J.K.' 4 ? primary 'Bangaru, S.' 5 ? primary 'Paulson, J.C.' 6 ? primary 'Yates 3rd, J.R.' 7 ? primary 'Yuan, M.' 8 ? primary 'Wilson, I.A.' 9 ? primary 'Ward, A.B.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 32357.543 1 ? ? 'N-terminal domain (UNP residues 1-293)' ? 2 polymer man 'Spike protein S1' 30795.889 1 ? ? 'receptor-binding domain (UNP residues 318-590)' ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MFVFLVLLPLVSSQCVNLITTTQSYTNFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPF NDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSSANNCT FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLALNRSY LTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCAL ; ;MFVFLVLLPLVSSQCVNLITTTQSYTNFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPF NDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSSANNCT FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLALNRSY LTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCAL ; A ? 2 'polypeptide(L)' no no ;FRVQPTESIVRFPNVTNLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYA DSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSLRKSKLKPFERDISTEIYQAGN KPCKGKGPNCYFPLESYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTKSNKK FLPFQQFGRDIVDTTDAVRDPQTLEILDITPC ; ;FRVQPTESIVRFPNVTNLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYA DSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSLRKSKLKPFERDISTEIYQAGN KPCKGKGPNCYFPLESYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTKSNKK FLPFQQFGRDIVDTTDAVRDPQTLEILDITPC ; C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 VAL n 1 4 PHE n 1 5 LEU n 1 6 VAL n 1 7 LEU n 1 8 LEU n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 SER n 1 13 SER n 1 14 GLN n 1 15 CYS n 1 16 VAL n 1 17 ASN n 1 18 LEU n 1 19 ILE n 1 20 THR n 1 21 THR n 1 22 THR n 1 23 GLN n 1 24 SER n 1 25 TYR n 1 26 THR n 1 27 ASN n 1 28 PHE n 1 29 THR n 1 30 ARG n 1 31 GLY n 1 32 VAL n 1 33 TYR n 1 34 TYR n 1 35 PRO n 1 36 ASP n 1 37 LYS n 1 38 VAL n 1 39 PHE n 1 40 ARG n 1 41 SER n 1 42 SER n 1 43 VAL n 1 44 LEU n 1 45 HIS n 1 46 LEU n 1 47 THR n 1 48 GLN n 1 49 ASP n 1 50 LEU n 1 51 PHE n 1 52 LEU n 1 53 PRO n 1 54 PHE n 1 55 PHE n 1 56 SER n 1 57 ASN n 1 58 VAL n 1 59 THR n 1 60 TRP n 1 61 PHE n 1 62 HIS n 1 63 ALA n 1 64 ILE n 1 65 SER n 1 66 GLY n 1 67 THR n 1 68 ASN n 1 69 GLY n 1 70 THR n 1 71 LYS n 1 72 ARG n 1 73 PHE n 1 74 ASP n 1 75 ASN n 1 76 PRO n 1 77 VAL n 1 78 LEU n 1 79 PRO n 1 80 PHE n 1 81 ASN n 1 82 ASP n 1 83 GLY n 1 84 VAL n 1 85 TYR n 1 86 PHE n 1 87 ALA n 1 88 SER n 1 89 THR n 1 90 GLU n 1 91 LYS n 1 92 SER n 1 93 ASN n 1 94 ILE n 1 95 ILE n 1 96 ARG n 1 97 GLY n 1 98 TRP n 1 99 ILE n 1 100 PHE n 1 101 GLY n 1 102 THR n 1 103 THR n 1 104 LEU n 1 105 ASP n 1 106 SER n 1 107 LYS n 1 108 THR n 1 109 GLN n 1 110 SER n 1 111 LEU n 1 112 LEU n 1 113 ILE n 1 114 VAL n 1 115 ASN n 1 116 ASN n 1 117 ALA n 1 118 THR n 1 119 ASN n 1 120 VAL n 1 121 PHE n 1 122 ILE n 1 123 LYS n 1 124 VAL n 1 125 CYS n 1 126 GLU n 1 127 PHE n 1 128 GLN n 1 129 PHE n 1 130 CYS n 1 131 ASN n 1 132 ASP n 1 133 PRO n 1 134 PHE n 1 135 LEU n 1 136 ASP n 1 137 VAL n 1 138 TYR n 1 139 HIS n 1 140 LYS n 1 141 ASN n 1 142 ASN n 1 143 LYS n 1 144 SER n 1 145 TRP n 1 146 MET n 1 147 GLU n 1 148 SER n 1 149 GLU n 1 150 SER n 1 151 GLY n 1 152 VAL n 1 153 TYR n 1 154 SER n 1 155 SER n 1 156 ALA n 1 157 ASN n 1 158 ASN n 1 159 CYS n 1 160 THR n 1 161 PHE n 1 162 GLU n 1 163 TYR n 1 164 VAL n 1 165 SER n 1 166 GLN n 1 167 PRO n 1 168 PHE n 1 169 LEU n 1 170 MET n 1 171 ASP n 1 172 LEU n 1 173 GLU n 1 174 GLY n 1 175 LYS n 1 176 GLN n 1 177 GLY n 1 178 ASN n 1 179 PHE n 1 180 LYS n 1 181 ASN n 1 182 LEU n 1 183 ARG n 1 184 GLU n 1 185 PHE n 1 186 VAL n 1 187 PHE n 1 188 LYS n 1 189 ASN n 1 190 ILE n 1 191 ASP n 1 192 GLY n 1 193 TYR n 1 194 PHE n 1 195 LYS n 1 196 ILE n 1 197 TYR n 1 198 SER n 1 199 LYS n 1 200 HIS n 1 201 THR n 1 202 PRO n 1 203 ILE n 1 204 ILE n 1 205 GLY n 1 206 ARG n 1 207 ASP n 1 208 PHE n 1 209 PRO n 1 210 GLN n 1 211 GLY n 1 212 PHE n 1 213 SER n 1 214 ALA n 1 215 LEU n 1 216 GLU n 1 217 PRO n 1 218 LEU n 1 219 VAL n 1 220 ASP n 1 221 LEU n 1 222 PRO n 1 223 ILE n 1 224 GLY n 1 225 ILE n 1 226 ASN n 1 227 ILE n 1 228 THR n 1 229 ARG n 1 230 PHE n 1 231 GLN n 1 232 THR n 1 233 LEU n 1 234 LEU n 1 235 ALA n 1 236 LEU n 1 237 ASN n 1 238 ARG n 1 239 SER n 1 240 TYR n 1 241 LEU n 1 242 THR n 1 243 PRO n 1 244 GLY n 1 245 ASP n 1 246 SER n 1 247 SER n 1 248 SER n 1 249 GLY n 1 250 TRP n 1 251 THR n 1 252 ALA n 1 253 GLY n 1 254 ALA n 1 255 ALA n 1 256 ASP n 1 257 TYR n 1 258 TYR n 1 259 VAL n 1 260 GLY n 1 261 TYR n 1 262 LEU n 1 263 GLN n 1 264 PRO n 1 265 ARG n 1 266 THR n 1 267 PHE n 1 268 LEU n 1 269 LEU n 1 270 LYS n 1 271 TYR n 1 272 ASN n 1 273 GLU n 1 274 ASN n 1 275 GLY n 1 276 THR n 1 277 ILE n 1 278 THR n 1 279 ASP n 1 280 ALA n 1 281 VAL n 1 282 ASP n 1 283 CYS n 1 284 ALA n 1 285 LEU n 2 1 PHE n 2 2 ARG n 2 3 VAL n 2 4 GLN n 2 5 PRO n 2 6 THR n 2 7 GLU n 2 8 SER n 2 9 ILE n 2 10 VAL n 2 11 ARG n 2 12 PHE n 2 13 PRO n 2 14 ASN n 2 15 VAL n 2 16 THR n 2 17 ASN n 2 18 LEU n 2 19 CYS n 2 20 PRO n 2 21 PHE n 2 22 HIS n 2 23 GLU n 2 24 VAL n 2 25 PHE n 2 26 ASN n 2 27 ALA n 2 28 THR n 2 29 ARG n 2 30 PHE n 2 31 ALA n 2 32 SER n 2 33 VAL n 2 34 TYR n 2 35 ALA n 2 36 TRP n 2 37 ASN n 2 38 ARG n 2 39 THR n 2 40 ARG n 2 41 ILE n 2 42 SER n 2 43 ASN n 2 44 CYS n 2 45 VAL n 2 46 ALA n 2 47 ASP n 2 48 TYR n 2 49 SER n 2 50 VAL n 2 51 LEU n 2 52 TYR n 2 53 ASN n 2 54 PHE n 2 55 ALA n 2 56 PRO n 2 57 PHE n 2 58 PHE n 2 59 ALA n 2 60 PHE n 2 61 LYS n 2 62 CYS n 2 63 TYR n 2 64 GLY n 2 65 VAL n 2 66 SER n 2 67 PRO n 2 68 THR n 2 69 LYS n 2 70 LEU n 2 71 ASN n 2 72 ASP n 2 73 LEU n 2 74 CYS n 2 75 PHE n 2 76 THR n 2 77 ASN n 2 78 VAL n 2 79 TYR n 2 80 ALA n 2 81 ASP n 2 82 SER n 2 83 PHE n 2 84 VAL n 2 85 ILE n 2 86 LYS n 2 87 GLY n 2 88 ASN n 2 89 GLU n 2 90 VAL n 2 91 SER n 2 92 GLN n 2 93 ILE n 2 94 ALA n 2 95 PRO n 2 96 GLY n 2 97 GLN n 2 98 THR n 2 99 GLY n 2 100 ASN n 2 101 ILE n 2 102 ALA n 2 103 ASP n 2 104 TYR n 2 105 ASN n 2 106 TYR n 2 107 LYS n 2 108 LEU n 2 109 PRO n 2 110 ASP n 2 111 ASP n 2 112 PHE n 2 113 THR n 2 114 GLY n 2 115 CYS n 2 116 VAL n 2 117 ILE n 2 118 ALA n 2 119 TRP n 2 120 ASN n 2 121 SER n 2 122 ASN n 2 123 LYS n 2 124 LEU n 2 125 ASP n 2 126 SER n 2 127 LYS n 2 128 HIS n 2 129 SER n 2 130 GLY n 2 131 ASN n 2 132 TYR n 2 133 ASP n 2 134 TYR n 2 135 TRP n 2 136 TYR n 2 137 ARG n 2 138 SER n 2 139 LEU n 2 140 ARG n 2 141 LYS n 2 142 SER n 2 143 LYS n 2 144 LEU n 2 145 LYS n 2 146 PRO n 2 147 PHE n 2 148 GLU n 2 149 ARG n 2 150 ASP n 2 151 ILE n 2 152 SER n 2 153 THR n 2 154 GLU n 2 155 ILE n 2 156 TYR n 2 157 GLN n 2 158 ALA n 2 159 GLY n 2 160 ASN n 2 161 LYS n 2 162 PRO n 2 163 CYS n 2 164 LYS n 2 165 GLY n 2 166 LYS n 2 167 GLY n 2 168 PRO n 2 169 ASN n 2 170 CYS n 2 171 TYR n 2 172 PHE n 2 173 PRO n 2 174 LEU n 2 175 GLU n 2 176 SER n 2 177 TYR n 2 178 GLY n 2 179 PHE n 2 180 ARG n 2 181 PRO n 2 182 THR n 2 183 TYR n 2 184 GLY n 2 185 VAL n 2 186 GLY n 2 187 HIS n 2 188 GLN n 2 189 PRO n 2 190 TYR n 2 191 ARG n 2 192 VAL n 2 193 VAL n 2 194 VAL n 2 195 LEU n 2 196 SER n 2 197 PHE n 2 198 GLU n 2 199 LEU n 2 200 LEU n 2 201 HIS n 2 202 ALA n 2 203 PRO n 2 204 ALA n 2 205 THR n 2 206 VAL n 2 207 CYS n 2 208 GLY n 2 209 PRO n 2 210 LYS n 2 211 LYS n 2 212 SER n 2 213 THR n 2 214 ASN n 2 215 LEU n 2 216 VAL n 2 217 LYS n 2 218 ASN n 2 219 LYS n 2 220 CYS n 2 221 VAL n 2 222 ASN n 2 223 PHE n 2 224 ASN n 2 225 PHE n 2 226 ASN n 2 227 GLY n 2 228 LEU n 2 229 THR n 2 230 GLY n 2 231 THR n 2 232 GLY n 2 233 VAL n 2 234 LEU n 2 235 THR n 2 236 LYS n 2 237 SER n 2 238 ASN n 2 239 LYS n 2 240 LYS n 2 241 PHE n 2 242 LEU n 2 243 PRO n 2 244 PHE n 2 245 GLN n 2 246 GLN n 2 247 PHE n 2 248 GLY n 2 249 ARG n 2 250 ASP n 2 251 ILE n 2 252 VAL n 2 253 ASP n 2 254 THR n 2 255 THR n 2 256 ASP n 2 257 ALA n 2 258 VAL n 2 259 ARG n 2 260 ASP n 2 261 PRO n 2 262 GLN n 2 263 THR n 2 264 LEU n 2 265 GLU n 2 266 ILE n 2 267 LEU n 2 268 ASP n 2 269 ILE n 2 270 THR n 2 271 PRO n 2 272 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 285 ? ? 'S, 2' ? 'Omicron KP.3.1.1' ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 272 ? ? 'S, 2' ? 'Omicron KP.3.1.1' ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 3 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 4 ? ? ? A . n A 1 2 PHE 2 5 ? ? ? A . n A 1 3 VAL 3 6 ? ? ? A . n A 1 4 PHE 4 7 ? ? ? A . n A 1 5 LEU 5 8 ? ? ? A . n A 1 6 VAL 6 9 ? ? ? A . n A 1 7 LEU 7 10 ? ? ? A . n A 1 8 LEU 8 11 ? ? ? A . n A 1 9 PRO 9 12 ? ? ? A . n A 1 10 LEU 10 13 ? ? ? A . n A 1 11 VAL 11 14 ? ? ? A . n A 1 12 SER 12 15 ? ? ? A . n A 1 13 SER 13 16 ? ? ? A . n A 1 14 GLN 14 17 ? ? ? A . n A 1 15 CYS 15 18 ? ? ? A . n A 1 16 VAL 16 19 ? ? ? A . n A 1 17 ASN 17 20 ? ? ? A . n A 1 18 LEU 18 21 ? ? ? A . n A 1 19 ILE 19 22 ? ? ? A . n A 1 20 THR 20 23 23 THR THR A . n A 1 21 THR 21 24 24 THR THR A . n A 1 22 THR 22 25 25 THR THR A . n A 1 23 GLN 23 26 26 GLN GLN A . n A 1 24 SER 24 27 27 SER SER A . n A 1 25 TYR 25 28 28 TYR TYR A . n A 1 26 THR 26 29 29 THR THR A . n A 1 27 ASN 27 30 30 ASN ASN A . n A 1 28 PHE 28 32 32 PHE PHE A . n A 1 29 THR 29 33 33 THR THR A . n A 1 30 ARG 30 34 34 ARG ARG A . n A 1 31 GLY 31 35 35 GLY GLY A . n A 1 32 VAL 32 36 36 VAL VAL A . n A 1 33 TYR 33 37 37 TYR TYR A . n A 1 34 TYR 34 38 38 TYR TYR A . n A 1 35 PRO 35 39 39 PRO PRO A . n A 1 36 ASP 36 40 40 ASP ASP A . n A 1 37 LYS 37 41 41 LYS LYS A . n A 1 38 VAL 38 42 42 VAL VAL A . n A 1 39 PHE 39 43 43 PHE PHE A . n A 1 40 ARG 40 44 44 ARG ARG A . n A 1 41 SER 41 45 45 SER SER A . n A 1 42 SER 42 46 46 SER SER A . n A 1 43 VAL 43 47 47 VAL VAL A . n A 1 44 LEU 44 48 48 LEU LEU A . n A 1 45 HIS 45 49 49 HIS HIS A . n A 1 46 LEU 46 50 50 LEU LEU A . n A 1 47 THR 47 51 51 THR THR A . n A 1 48 GLN 48 52 52 GLN GLN A . n A 1 49 ASP 49 53 53 ASP ASP A . n A 1 50 LEU 50 54 54 LEU LEU A . n A 1 51 PHE 51 55 55 PHE PHE A . n A 1 52 LEU 52 56 56 LEU LEU A . n A 1 53 PRO 53 57 57 PRO PRO A . n A 1 54 PHE 54 58 58 PHE PHE A . n A 1 55 PHE 55 59 59 PHE PHE A . n A 1 56 SER 56 60 60 SER SER A . n A 1 57 ASN 57 61 61 ASN ASN A . n A 1 58 VAL 58 62 62 VAL VAL A . n A 1 59 THR 59 63 63 THR THR A . n A 1 60 TRP 60 64 64 TRP TRP A . n A 1 61 PHE 61 65 65 PHE PHE A . n A 1 62 HIS 62 66 66 HIS HIS A . n A 1 63 ALA 63 67 67 ALA ALA A . n A 1 64 ILE 64 68 68 ILE ILE A . n A 1 65 SER 65 69 69 SER SER A . n A 1 66 GLY 66 70 ? ? ? A . n A 1 67 THR 67 71 ? ? ? A . n A 1 68 ASN 68 72 ? ? ? A . n A 1 69 GLY 69 73 73 GLY GLY A . n A 1 70 THR 70 74 74 THR THR A . n A 1 71 LYS 71 75 75 LYS LYS A . n A 1 72 ARG 72 76 76 ARG ARG A . n A 1 73 PHE 73 77 77 PHE PHE A . n A 1 74 ASP 74 78 78 ASP ASP A . n A 1 75 ASN 75 79 79 ASN ASN A . n A 1 76 PRO 76 80 80 PRO PRO A . n A 1 77 VAL 77 81 81 VAL VAL A . n A 1 78 LEU 78 82 82 LEU LEU A . n A 1 79 PRO 79 83 83 PRO PRO A . n A 1 80 PHE 80 84 84 PHE PHE A . n A 1 81 ASN 81 85 85 ASN ASN A . n A 1 82 ASP 82 86 86 ASP ASP A . n A 1 83 GLY 83 87 87 GLY GLY A . n A 1 84 VAL 84 88 88 VAL VAL A . n A 1 85 TYR 85 89 89 TYR TYR A . n A 1 86 PHE 86 90 90 PHE PHE A . n A 1 87 ALA 87 91 91 ALA ALA A . n A 1 88 SER 88 92 92 SER SER A . n A 1 89 THR 89 93 93 THR THR A . n A 1 90 GLU 90 94 94 GLU GLU A . n A 1 91 LYS 91 95 95 LYS LYS A . n A 1 92 SER 92 96 96 SER SER A . n A 1 93 ASN 93 97 97 ASN ASN A . n A 1 94 ILE 94 98 98 ILE ILE A . n A 1 95 ILE 95 99 99 ILE ILE A . n A 1 96 ARG 96 100 100 ARG ARG A . n A 1 97 GLY 97 101 101 GLY GLY A . n A 1 98 TRP 98 102 102 TRP TRP A . n A 1 99 ILE 99 103 103 ILE ILE A . n A 1 100 PHE 100 104 104 PHE PHE A . n A 1 101 GLY 101 105 105 GLY GLY A . n A 1 102 THR 102 106 106 THR THR A . n A 1 103 THR 103 107 107 THR THR A . n A 1 104 LEU 104 108 108 LEU LEU A . n A 1 105 ASP 105 109 109 ASP ASP A . n A 1 106 SER 106 110 110 SER SER A . n A 1 107 LYS 107 111 111 LYS LYS A . n A 1 108 THR 108 112 112 THR THR A . n A 1 109 GLN 109 113 113 GLN GLN A . n A 1 110 SER 110 114 114 SER SER A . n A 1 111 LEU 111 115 115 LEU LEU A . n A 1 112 LEU 112 116 116 LEU LEU A . n A 1 113 ILE 113 117 117 ILE ILE A . n A 1 114 VAL 114 118 118 VAL VAL A . n A 1 115 ASN 115 119 119 ASN ASN A . n A 1 116 ASN 116 120 120 ASN ASN A . n A 1 117 ALA 117 121 121 ALA ALA A . n A 1 118 THR 118 122 122 THR THR A . n A 1 119 ASN 119 123 123 ASN ASN A . n A 1 120 VAL 120 124 124 VAL VAL A . n A 1 121 PHE 121 125 125 PHE PHE A . n A 1 122 ILE 122 126 126 ILE ILE A . n A 1 123 LYS 123 127 127 LYS LYS A . n A 1 124 VAL 124 128 128 VAL VAL A . n A 1 125 CYS 125 129 129 CYS CYS A . n A 1 126 GLU 126 130 130 GLU GLU A . n A 1 127 PHE 127 131 131 PHE PHE A . n A 1 128 GLN 128 132 132 GLN GLN A . n A 1 129 PHE 129 133 133 PHE PHE A . n A 1 130 CYS 130 134 134 CYS CYS A . n A 1 131 ASN 131 135 135 ASN ASN A . n A 1 132 ASP 132 136 136 ASP ASP A . n A 1 133 PRO 133 137 137 PRO PRO A . n A 1 134 PHE 134 138 138 PHE PHE A . n A 1 135 LEU 135 139 139 LEU LEU A . n A 1 136 ASP 136 140 140 ASP ASP A . n A 1 137 VAL 137 141 141 VAL VAL A . n A 1 138 TYR 138 142 142 TYR TYR A . n A 1 139 HIS 139 143 ? ? ? A . n A 1 140 LYS 140 144 ? ? ? A . n A 1 141 ASN 141 145 ? ? ? A . n A 1 142 ASN 142 146 ? ? ? A . n A 1 143 LYS 143 147 ? ? ? A . n A 1 144 SER 144 148 ? ? ? A . n A 1 145 TRP 145 149 ? ? ? A . n A 1 146 MET 146 150 150 MET MET A . n A 1 147 GLU 147 151 151 GLU GLU A . n A 1 148 SER 148 152 152 SER SER A . n A 1 149 GLU 149 153 153 GLU GLU A . n A 1 150 SER 150 154 154 SER SER A . n A 1 151 GLY 151 155 155 GLY GLY A . n A 1 152 VAL 152 156 156 VAL VAL A . n A 1 153 TYR 153 157 157 TYR TYR A . n A 1 154 SER 154 158 158 SER SER A . n A 1 155 SER 155 159 159 SER SER A . n A 1 156 ALA 156 160 160 ALA ALA A . n A 1 157 ASN 157 161 161 ASN ASN A . n A 1 158 ASN 158 162 162 ASN ASN A . n A 1 159 CYS 159 163 163 CYS CYS A . n A 1 160 THR 160 164 164 THR THR A . n A 1 161 PHE 161 165 165 PHE PHE A . n A 1 162 GLU 162 166 166 GLU GLU A . n A 1 163 TYR 163 167 167 TYR TYR A . n A 1 164 VAL 164 168 168 VAL VAL A . n A 1 165 SER 165 169 169 SER SER A . n A 1 166 GLN 166 170 170 GLN GLN A . n A 1 167 PRO 167 171 171 PRO PRO A . n A 1 168 PHE 168 172 172 PHE PHE A . n A 1 169 LEU 169 173 173 LEU LEU A . n A 1 170 MET 170 174 ? ? ? A . n A 1 171 ASP 171 175 ? ? ? A . n A 1 172 LEU 172 176 ? ? ? A . n A 1 173 GLU 173 177 ? ? ? A . n A 1 174 GLY 174 178 ? ? ? A . n A 1 175 LYS 175 179 ? ? ? A . n A 1 176 GLN 176 180 ? ? ? A . n A 1 177 GLY 177 181 ? ? ? A . n A 1 178 ASN 178 182 ? ? ? A . n A 1 179 PHE 179 183 ? ? ? A . n A 1 180 LYS 180 184 184 LYS LYS A . n A 1 181 ASN 181 185 185 ASN ASN A . n A 1 182 LEU 182 186 186 LEU LEU A . n A 1 183 ARG 183 187 187 ARG ARG A . n A 1 184 GLU 184 188 188 GLU GLU A . n A 1 185 PHE 185 189 189 PHE PHE A . n A 1 186 VAL 186 190 190 VAL VAL A . n A 1 187 PHE 187 191 191 PHE PHE A . n A 1 188 LYS 188 192 192 LYS LYS A . n A 1 189 ASN 189 193 193 ASN ASN A . n A 1 190 ILE 190 194 194 ILE ILE A . n A 1 191 ASP 191 195 195 ASP ASP A . n A 1 192 GLY 192 196 196 GLY GLY A . n A 1 193 TYR 193 197 197 TYR TYR A . n A 1 194 PHE 194 198 198 PHE PHE A . n A 1 195 LYS 195 199 199 LYS LYS A . n A 1 196 ILE 196 200 200 ILE ILE A . n A 1 197 TYR 197 201 201 TYR TYR A . n A 1 198 SER 198 202 202 SER SER A . n A 1 199 LYS 199 203 203 LYS LYS A . n A 1 200 HIS 200 204 204 HIS HIS A . n A 1 201 THR 201 205 205 THR THR A . n A 1 202 PRO 202 206 206 PRO PRO A . n A 1 203 ILE 203 207 207 ILE ILE A . n A 1 204 ILE 204 208 208 ILE ILE A . n A 1 205 GLY 205 209 209 GLY GLY A . n A 1 206 ARG 206 210 210 ARG ARG A . n A 1 207 ASP 207 211 211 ASP ASP A . n A 1 208 PHE 208 212 212 PHE PHE A . n A 1 209 PRO 209 213 213 PRO PRO A . n A 1 210 GLN 210 214 214 GLN GLN A . n A 1 211 GLY 211 215 215 GLY GLY A . n A 1 212 PHE 212 216 216 PHE PHE A . n A 1 213 SER 213 217 217 SER SER A . n A 1 214 ALA 214 218 218 ALA ALA A . n A 1 215 LEU 215 219 219 LEU LEU A . n A 1 216 GLU 216 220 220 GLU GLU A . n A 1 217 PRO 217 221 221 PRO PRO A . n A 1 218 LEU 218 222 222 LEU LEU A . n A 1 219 VAL 219 223 223 VAL VAL A . n A 1 220 ASP 220 224 224 ASP ASP A . n A 1 221 LEU 221 225 225 LEU LEU A . n A 1 222 PRO 222 226 226 PRO PRO A . n A 1 223 ILE 223 227 227 ILE ILE A . n A 1 224 GLY 224 228 228 GLY GLY A . n A 1 225 ILE 225 229 229 ILE ILE A . n A 1 226 ASN 226 230 230 ASN ASN A . n A 1 227 ILE 227 231 231 ILE ILE A . n A 1 228 THR 228 232 232 THR THR A . n A 1 229 ARG 229 233 233 ARG ARG A . n A 1 230 PHE 230 234 234 PHE PHE A . n A 1 231 GLN 231 235 235 GLN GLN A . n A 1 232 THR 232 236 236 THR THR A . n A 1 233 LEU 233 237 237 LEU LEU A . n A 1 234 LEU 234 238 238 LEU LEU A . n A 1 235 ALA 235 239 239 ALA ALA A . n A 1 236 LEU 236 240 240 LEU LEU A . n A 1 237 ASN 237 241 241 ASN ASN A . n A 1 238 ARG 238 242 242 ARG ARG A . n A 1 239 SER 239 243 243 SER SER A . n A 1 240 TYR 240 244 244 TYR TYR A . n A 1 241 LEU 241 245 ? ? ? A . n A 1 242 THR 242 246 ? ? ? A . n A 1 243 PRO 243 247 ? ? ? A . n A 1 244 GLY 244 248 ? ? ? A . n A 1 245 ASP 245 249 ? ? ? A . n A 1 246 SER 246 250 ? ? ? A . n A 1 247 SER 247 251 ? ? ? A . n A 1 248 SER 248 252 ? ? ? A . n A 1 249 GLY 249 253 253 GLY GLY A . n A 1 250 TRP 250 254 254 TRP TRP A . n A 1 251 THR 251 255 255 THR THR A . n A 1 252 ALA 252 256 256 ALA ALA A . n A 1 253 GLY 253 257 257 GLY GLY A . n A 1 254 ALA 254 258 258 ALA ALA A . n A 1 255 ALA 255 259 259 ALA ALA A . n A 1 256 ASP 256 260 260 ASP ASP A . n A 1 257 TYR 257 261 261 TYR TYR A . n A 1 258 TYR 258 262 262 TYR TYR A . n A 1 259 VAL 259 263 263 VAL VAL A . n A 1 260 GLY 260 264 264 GLY GLY A . n A 1 261 TYR 261 265 265 TYR TYR A . n A 1 262 LEU 262 266 266 LEU LEU A . n A 1 263 GLN 263 267 267 GLN GLN A . n A 1 264 PRO 264 268 268 PRO PRO A . n A 1 265 ARG 265 269 269 ARG ARG A . n A 1 266 THR 266 270 270 THR THR A . n A 1 267 PHE 267 271 271 PHE PHE A . n A 1 268 LEU 268 272 272 LEU LEU A . n A 1 269 LEU 269 273 273 LEU LEU A . n A 1 270 LYS 270 274 274 LYS LYS A . n A 1 271 TYR 271 275 275 TYR TYR A . n A 1 272 ASN 272 276 276 ASN ASN A . n A 1 273 GLU 273 277 277 GLU GLU A . n A 1 274 ASN 274 278 278 ASN ASN A . n A 1 275 GLY 275 279 279 GLY GLY A . n A 1 276 THR 276 280 280 THR THR A . n A 1 277 ILE 277 281 281 ILE ILE A . n A 1 278 THR 278 282 282 THR THR A . n A 1 279 ASP 279 283 283 ASP ASP A . n A 1 280 ALA 280 284 284 ALA ALA A . n A 1 281 VAL 281 285 285 VAL VAL A . n A 1 282 ASP 282 286 286 ASP ASP A . n A 1 283 CYS 283 287 287 CYS CYS A . n A 1 284 ALA 284 288 288 ALA ALA A . n A 1 285 LEU 285 289 289 LEU LEU A . n B 2 1 PHE 1 318 318 PHE PHE C . n B 2 2 ARG 2 319 319 ARG ARG C . n B 2 3 VAL 3 320 320 VAL VAL C . n B 2 4 GLN 4 321 321 GLN GLN C . n B 2 5 PRO 5 322 322 PRO PRO C . n B 2 6 THR 6 323 323 THR THR C . n B 2 7 GLU 7 324 324 GLU GLU C . n B 2 8 SER 8 325 325 SER SER C . n B 2 9 ILE 9 326 326 ILE ILE C . n B 2 10 VAL 10 327 327 VAL VAL C . n B 2 11 ARG 11 328 328 ARG ARG C . n B 2 12 PHE 12 329 329 PHE PHE C . n B 2 13 PRO 13 330 330 PRO PRO C . n B 2 14 ASN 14 331 331 ASN ASN C . n B 2 15 VAL 15 332 332 VAL VAL C . n B 2 16 THR 16 333 333 THR THR C . n B 2 17 ASN 17 334 334 ASN ASN C . n B 2 18 LEU 18 335 335 LEU LEU C . n B 2 19 CYS 19 336 336 CYS CYS C . n B 2 20 PRO 20 337 337 PRO PRO C . n B 2 21 PHE 21 338 338 PHE PHE C . n B 2 22 HIS 22 339 339 HIS HIS C . n B 2 23 GLU 23 340 340 GLU GLU C . n B 2 24 VAL 24 341 341 VAL VAL C . n B 2 25 PHE 25 342 342 PHE PHE C . n B 2 26 ASN 26 343 343 ASN ASN C . n B 2 27 ALA 27 344 344 ALA ALA C . n B 2 28 THR 28 345 345 THR THR C . n B 2 29 ARG 29 346 346 ARG ARG C . n B 2 30 PHE 30 347 347 PHE PHE C . n B 2 31 ALA 31 348 348 ALA ALA C . n B 2 32 SER 32 349 349 SER SER C . n B 2 33 VAL 33 350 350 VAL VAL C . n B 2 34 TYR 34 351 351 TYR TYR C . n B 2 35 ALA 35 352 352 ALA ALA C . n B 2 36 TRP 36 353 353 TRP TRP C . n B 2 37 ASN 37 354 354 ASN ASN C . n B 2 38 ARG 38 355 355 ARG ARG C . n B 2 39 THR 39 356 356 THR THR C . n B 2 40 ARG 40 357 357 ARG ARG C . n B 2 41 ILE 41 358 358 ILE ILE C . n B 2 42 SER 42 359 359 SER SER C . n B 2 43 ASN 43 360 360 ASN ASN C . n B 2 44 CYS 44 361 361 CYS CYS C . n B 2 45 VAL 45 362 362 VAL VAL C . n B 2 46 ALA 46 363 363 ALA ALA C . n B 2 47 ASP 47 364 364 ASP ASP C . n B 2 48 TYR 48 365 365 TYR TYR C . n B 2 49 SER 49 366 366 SER SER C . n B 2 50 VAL 50 367 367 VAL VAL C . n B 2 51 LEU 51 368 368 LEU LEU C . n B 2 52 TYR 52 369 369 TYR TYR C . n B 2 53 ASN 53 370 370 ASN ASN C . n B 2 54 PHE 54 371 371 PHE PHE C . n B 2 55 ALA 55 372 372 ALA ALA C . n B 2 56 PRO 56 373 373 PRO PRO C . n B 2 57 PHE 57 374 374 PHE PHE C . n B 2 58 PHE 58 375 375 PHE PHE C . n B 2 59 ALA 59 376 376 ALA ALA C . n B 2 60 PHE 60 377 377 PHE PHE C . n B 2 61 LYS 61 378 378 LYS LYS C . n B 2 62 CYS 62 379 379 CYS CYS C . n B 2 63 TYR 63 380 380 TYR TYR C . n B 2 64 GLY 64 381 381 GLY GLY C . n B 2 65 VAL 65 382 382 VAL VAL C . n B 2 66 SER 66 383 383 SER SER C . n B 2 67 PRO 67 384 384 PRO PRO C . n B 2 68 THR 68 385 385 THR THR C . n B 2 69 LYS 69 386 386 LYS LYS C . n B 2 70 LEU 70 387 387 LEU LEU C . n B 2 71 ASN 71 388 388 ASN ASN C . n B 2 72 ASP 72 389 389 ASP ASP C . n B 2 73 LEU 73 390 390 LEU LEU C . n B 2 74 CYS 74 391 391 CYS CYS C . n B 2 75 PHE 75 392 392 PHE PHE C . n B 2 76 THR 76 393 393 THR THR C . n B 2 77 ASN 77 394 394 ASN ASN C . n B 2 78 VAL 78 395 395 VAL VAL C . n B 2 79 TYR 79 396 396 TYR TYR C . n B 2 80 ALA 80 397 397 ALA ALA C . n B 2 81 ASP 81 398 398 ASP ASP C . n B 2 82 SER 82 399 399 SER SER C . n B 2 83 PHE 83 400 400 PHE PHE C . n B 2 84 VAL 84 401 401 VAL VAL C . n B 2 85 ILE 85 402 402 ILE ILE C . n B 2 86 LYS 86 403 403 LYS LYS C . n B 2 87 GLY 87 404 404 GLY GLY C . n B 2 88 ASN 88 405 405 ASN ASN C . n B 2 89 GLU 89 406 406 GLU GLU C . n B 2 90 VAL 90 407 407 VAL VAL C . n B 2 91 SER 91 408 408 SER SER C . n B 2 92 GLN 92 409 409 GLN GLN C . n B 2 93 ILE 93 410 410 ILE ILE C . n B 2 94 ALA 94 411 411 ALA ALA C . n B 2 95 PRO 95 412 412 PRO PRO C . n B 2 96 GLY 96 413 413 GLY GLY C . n B 2 97 GLN 97 414 414 GLN GLN C . n B 2 98 THR 98 415 415 THR THR C . n B 2 99 GLY 99 416 416 GLY GLY C . n B 2 100 ASN 100 417 417 ASN ASN C . n B 2 101 ILE 101 418 418 ILE ILE C . n B 2 102 ALA 102 419 419 ALA ALA C . n B 2 103 ASP 103 420 420 ASP ASP C . n B 2 104 TYR 104 421 421 TYR TYR C . n B 2 105 ASN 105 422 422 ASN ASN C . n B 2 106 TYR 106 423 423 TYR TYR C . n B 2 107 LYS 107 424 424 LYS LYS C . n B 2 108 LEU 108 425 425 LEU LEU C . n B 2 109 PRO 109 426 426 PRO PRO C . n B 2 110 ASP 110 427 427 ASP ASP C . n B 2 111 ASP 111 428 428 ASP ASP C . n B 2 112 PHE 112 429 429 PHE PHE C . n B 2 113 THR 113 430 430 THR THR C . n B 2 114 GLY 114 431 431 GLY GLY C . n B 2 115 CYS 115 432 432 CYS CYS C . n B 2 116 VAL 116 433 433 VAL VAL C . n B 2 117 ILE 117 434 434 ILE ILE C . n B 2 118 ALA 118 435 435 ALA ALA C . n B 2 119 TRP 119 436 436 TRP TRP C . n B 2 120 ASN 120 437 437 ASN ASN C . n B 2 121 SER 121 438 438 SER SER C . n B 2 122 ASN 122 439 439 ASN ASN C . n B 2 123 LYS 123 440 440 LYS LYS C . n B 2 124 LEU 124 441 441 LEU LEU C . n B 2 125 ASP 125 442 442 ASP ASP C . n B 2 126 SER 126 443 443 SER SER C . n B 2 127 LYS 127 444 444 LYS LYS C . n B 2 128 HIS 128 445 445 HIS HIS C . n B 2 129 SER 129 446 446 SER SER C . n B 2 130 GLY 130 447 447 GLY GLY C . n B 2 131 ASN 131 448 448 ASN ASN C . n B 2 132 TYR 132 449 449 TYR TYR C . n B 2 133 ASP 133 450 450 ASP ASP C . n B 2 134 TYR 134 451 451 TYR TYR C . n B 2 135 TRP 135 452 452 TRP TRP C . n B 2 136 TYR 136 453 453 TYR TYR C . n B 2 137 ARG 137 454 454 ARG ARG C . n B 2 138 SER 138 455 455 SER SER C . n B 2 139 LEU 139 456 456 LEU LEU C . n B 2 140 ARG 140 457 457 ARG ARG C . n B 2 141 LYS 141 458 458 LYS LYS C . n B 2 142 SER 142 459 459 SER SER C . n B 2 143 LYS 143 460 460 LYS LYS C . n B 2 144 LEU 144 461 461 LEU LEU C . n B 2 145 LYS 145 462 462 LYS LYS C . n B 2 146 PRO 146 463 463 PRO PRO C . n B 2 147 PHE 147 464 464 PHE PHE C . n B 2 148 GLU 148 465 465 GLU GLU C . n B 2 149 ARG 149 466 466 ARG ARG C . n B 2 150 ASP 150 467 467 ASP ASP C . n B 2 151 ILE 151 468 468 ILE ILE C . n B 2 152 SER 152 469 469 SER SER C . n B 2 153 THR 153 470 470 THR THR C . n B 2 154 GLU 154 471 471 GLU GLU C . n B 2 155 ILE 155 472 472 ILE ILE C . n B 2 156 TYR 156 473 473 TYR TYR C . n B 2 157 GLN 157 474 474 GLN GLN C . n B 2 158 ALA 158 475 475 ALA ALA C . n B 2 159 GLY 159 476 476 GLY GLY C . n B 2 160 ASN 160 477 477 ASN ASN C . n B 2 161 LYS 161 478 478 LYS LYS C . n B 2 162 PRO 162 479 479 PRO PRO C . n B 2 163 CYS 163 480 480 CYS CYS C . n B 2 164 LYS 164 481 481 LYS LYS C . n B 2 165 GLY 165 482 482 GLY GLY C . n B 2 166 LYS 166 484 484 LYS LYS C . n B 2 167 GLY 167 485 485 GLY GLY C . n B 2 168 PRO 168 486 486 PRO PRO C . n B 2 169 ASN 169 487 487 ASN ASN C . n B 2 170 CYS 170 488 488 CYS CYS C . n B 2 171 TYR 171 489 489 TYR TYR C . n B 2 172 PHE 172 490 490 PHE PHE C . n B 2 173 PRO 173 491 491 PRO PRO C . n B 2 174 LEU 174 492 492 LEU LEU C . n B 2 175 GLU 175 493 493 GLU GLU C . n B 2 176 SER 176 494 494 SER SER C . n B 2 177 TYR 177 495 495 TYR TYR C . n B 2 178 GLY 178 496 496 GLY GLY C . n B 2 179 PHE 179 497 497 PHE PHE C . n B 2 180 ARG 180 498 498 ARG ARG C . n B 2 181 PRO 181 499 499 PRO PRO C . n B 2 182 THR 182 500 500 THR THR C . n B 2 183 TYR 183 501 501 TYR TYR C . n B 2 184 GLY 184 502 502 GLY GLY C . n B 2 185 VAL 185 503 503 VAL VAL C . n B 2 186 GLY 186 504 504 GLY GLY C . n B 2 187 HIS 187 505 505 HIS HIS C . n B 2 188 GLN 188 506 506 GLN GLN C . n B 2 189 PRO 189 507 507 PRO PRO C . n B 2 190 TYR 190 508 508 TYR TYR C . n B 2 191 ARG 191 509 509 ARG ARG C . n B 2 192 VAL 192 510 510 VAL VAL C . n B 2 193 VAL 193 511 511 VAL VAL C . n B 2 194 VAL 194 512 512 VAL VAL C . n B 2 195 LEU 195 513 513 LEU LEU C . n B 2 196 SER 196 514 514 SER SER C . n B 2 197 PHE 197 515 515 PHE PHE C . n B 2 198 GLU 198 516 516 GLU GLU C . n B 2 199 LEU 199 517 517 LEU LEU C . n B 2 200 LEU 200 518 518 LEU LEU C . n B 2 201 HIS 201 519 519 HIS HIS C . n B 2 202 ALA 202 520 520 ALA ALA C . n B 2 203 PRO 203 521 521 PRO PRO C . n B 2 204 ALA 204 522 522 ALA ALA C . n B 2 205 THR 205 523 523 THR THR C . n B 2 206 VAL 206 524 524 VAL VAL C . n B 2 207 CYS 207 525 525 CYS CYS C . n B 2 208 GLY 208 526 526 GLY GLY C . n B 2 209 PRO 209 527 527 PRO PRO C . n B 2 210 LYS 210 528 528 LYS LYS C . n B 2 211 LYS 211 529 529 LYS LYS C . n B 2 212 SER 212 530 530 SER SER C . n B 2 213 THR 213 531 531 THR THR C . n B 2 214 ASN 214 532 532 ASN ASN C . n B 2 215 LEU 215 533 533 LEU LEU C . n B 2 216 VAL 216 534 534 VAL VAL C . n B 2 217 LYS 217 535 535 LYS LYS C . n B 2 218 ASN 218 536 536 ASN ASN C . n B 2 219 LYS 219 537 537 LYS LYS C . n B 2 220 CYS 220 538 538 CYS CYS C . n B 2 221 VAL 221 539 539 VAL VAL C . n B 2 222 ASN 222 540 540 ASN ASN C . n B 2 223 PHE 223 541 541 PHE PHE C . n B 2 224 ASN 224 542 542 ASN ASN C . n B 2 225 PHE 225 543 543 PHE PHE C . n B 2 226 ASN 226 544 544 ASN ASN C . n B 2 227 GLY 227 545 545 GLY GLY C . n B 2 228 LEU 228 546 546 LEU LEU C . n B 2 229 THR 229 547 547 THR THR C . n B 2 230 GLY 230 548 548 GLY GLY C . n B 2 231 THR 231 549 549 THR THR C . n B 2 232 GLY 232 550 550 GLY GLY C . n B 2 233 VAL 233 551 551 VAL VAL C . n B 2 234 LEU 234 552 552 LEU LEU C . n B 2 235 THR 235 553 553 THR THR C . n B 2 236 LYS 236 554 554 LYS LYS C . n B 2 237 SER 237 555 555 SER SER C . n B 2 238 ASN 238 556 556 ASN ASN C . n B 2 239 LYS 239 557 557 LYS LYS C . n B 2 240 LYS 240 558 558 LYS LYS C . n B 2 241 PHE 241 559 559 PHE PHE C . n B 2 242 LEU 242 560 560 LEU LEU C . n B 2 243 PRO 243 561 561 PRO PRO C . n B 2 244 PHE 244 562 562 PHE PHE C . n B 2 245 GLN 245 563 563 GLN GLN C . n B 2 246 GLN 246 564 564 GLN GLN C . n B 2 247 PHE 247 565 565 PHE PHE C . n B 2 248 GLY 248 566 566 GLY GLY C . n B 2 249 ARG 249 567 567 ARG ARG C . n B 2 250 ASP 250 568 568 ASP ASP C . n B 2 251 ILE 251 569 569 ILE ILE C . n B 2 252 VAL 252 570 570 VAL VAL C . n B 2 253 ASP 253 571 571 ASP ASP C . n B 2 254 THR 254 572 572 THR THR C . n B 2 255 THR 255 573 573 THR THR C . n B 2 256 ASP 256 574 574 ASP ASP C . n B 2 257 ALA 257 575 575 ALA ALA C . n B 2 258 VAL 258 576 576 VAL VAL C . n B 2 259 ARG 259 577 577 ARG ARG C . n B 2 260 ASP 260 578 578 ASP ASP C . n B 2 261 PRO 261 579 579 PRO PRO C . n B 2 262 GLN 262 580 580 GLN GLN C . n B 2 263 THR 263 581 581 THR THR C . n B 2 264 LEU 264 582 582 LEU LEU C . n B 2 265 GLU 265 583 583 GLU GLU C . n B 2 266 ILE 266 584 584 ILE ILE C . n B 2 267 LEU 267 585 585 LEU LEU C . n B 2 268 ASP 268 586 586 ASP ASP C . n B 2 269 ILE 269 587 587 ILE ILE C . n B 2 270 THR 270 588 588 THR THR C . n B 2 271 PRO 271 589 589 PRO PRO C . n B 2 272 CYS 272 590 590 CYS CYS C . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 B NAG 1 C NAG 594 n C 3 NAG 2 B NAG 2 C NAG 595 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 301 290 NAG NAG A . E 4 NAG 1 302 291 NAG NAG A . F 4 NAG 1 303 292 NAG NAG A . G 4 NAG 1 304 293 NAG NAG A . H 4 NAG 1 305 294 NAG NAG A . I 4 NAG 1 306 295 NAG NAG A . J 4 NAG 1 307 296 NAG NAG A . K 4 NAG 1 601 592 NAG NAG C . L 4 NAG 1 602 593 NAG NAG C . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9ELG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9ELG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9ELG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9ELG _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.71 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 9ELG _struct.title 'Cryo-EM structure of SARS-CoV-2 Omicron KP.3.1.1 spike RBD and NTD (local refinement of RBD and NTD)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9ELG _struct_keywords.text 'SARS-CoV-2, COVID-19, Spike, RBD, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCAL ; 1 2 UNP SPIKE_SARS2 P0DTC2 ? 2 ;FRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYA DSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGS TPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNK KFLPFQQFGRDIADTTDAVRDPQTLEILDITPC ; 318 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9ELG A 1 ? 285 ? P0DTC2 1 ? 293 ? 4 289 2 2 9ELG C 1 ? 272 ? P0DTC2 318 ? 590 ? 318 590 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9ELG ILE A 19 ? UNP P0DTC2 THR 19 variant 22 1 1 9ELG THR A 21 ? UNP P0DTC2 ARG 21 conflict 24 2 1 9ELG ? A ? ? UNP P0DTC2 LEU 24 deletion ? 3 1 9ELG ? A ? ? UNP P0DTC2 PRO 25 deletion ? 4 1 9ELG ? A ? ? UNP P0DTC2 PRO 26 deletion ? 5 1 9ELG SER A 24 ? UNP P0DTC2 ALA 27 conflict 27 6 1 9ELG ? A ? ? UNP P0DTC2 SER 31 deletion ? 7 1 9ELG LEU A 46 ? UNP P0DTC2 SER 50 conflict 50 8 1 9ELG ? A ? ? UNP P0DTC2 HIS 69 deletion ? 9 1 9ELG ? A ? ? UNP P0DTC2 VAL 70 deletion ? 10 1 9ELG PHE A 121 ? UNP P0DTC2 VAL 127 conflict 125 11 1 9ELG ASP A 136 ? UNP P0DTC2 GLY 142 variant 140 12 1 9ELG ? A ? ? UNP P0DTC2 TYR 145 deletion ? 13 1 9ELG SER A 150 ? UNP P0DTC2 PHE 157 conflict 154 14 1 9ELG GLY A 151 ? UNP P0DTC2 ARG 158 conflict 155 15 1 9ELG ? A ? ? UNP P0DTC2 ASN 211 deletion ? 16 1 9ELG ILE A 204 ? UNP P0DTC2 LEU 212 conflict 208 17 1 9ELG GLY A 205 ? UNP P0DTC2 VAL 213 variant 209 18 1 9ELG PHE A 208 ? UNP P0DTC2 LEU 216 conflict 212 19 1 9ELG ASN A 237 ? UNP P0DTC2 HIS 245 conflict 241 20 1 9ELG ASP A 256 ? UNP P0DTC2 ALA 264 conflict 260 21 2 9ELG VAL C 15 ? UNP P0DTC2 ILE 332 conflict 332 22 2 9ELG HIS C 22 ? UNP P0DTC2 GLY 339 variant 339 23 2 9ELG THR C 39 ? UNP P0DTC2 LYS 356 conflict 356 24 2 9ELG PHE C 54 ? UNP P0DTC2 SER 371 variant 371 25 2 9ELG PRO C 56 ? UNP P0DTC2 SER 373 variant 373 26 2 9ELG PHE C 58 ? UNP P0DTC2 SER 375 variant 375 27 2 9ELG ALA C 59 ? UNP P0DTC2 THR 376 variant 376 28 2 9ELG LYS C 86 ? UNP P0DTC2 ARG 403 conflict 403 29 2 9ELG ASN C 88 ? UNP P0DTC2 ASP 405 variant 405 30 2 9ELG SER C 91 ? UNP P0DTC2 ARG 408 variant 408 31 2 9ELG ASN C 100 ? UNP P0DTC2 LYS 417 variant 417 32 2 9ELG LYS C 123 ? UNP P0DTC2 ASN 440 variant 440 33 2 9ELG HIS C 128 ? UNP P0DTC2 VAL 445 conflict 445 34 2 9ELG SER C 129 ? UNP P0DTC2 GLY 446 variant 446 35 2 9ELG ASP C 133 ? UNP P0DTC2 ASN 450 conflict 450 36 2 9ELG TRP C 135 ? UNP P0DTC2 LEU 452 conflict 452 37 2 9ELG SER C 138 ? UNP P0DTC2 LEU 455 conflict 455 38 2 9ELG LEU C 139 ? UNP P0DTC2 PHE 456 variant 456 39 2 9ELG LYS C 143 ? UNP P0DTC2 ASN 460 variant 460 40 2 9ELG ASN C 160 ? UNP P0DTC2 SER 477 variant 477 41 2 9ELG LYS C 161 ? UNP P0DTC2 THR 478 variant 478 42 2 9ELG LYS C 164 ? UNP P0DTC2 ASN 481 conflict 481 43 2 9ELG ? C ? ? UNP P0DTC2 VAL 483 deletion ? 44 2 9ELG LYS C 166 ? UNP P0DTC2 GLU 484 variant 484 45 2 9ELG PRO C 168 ? UNP P0DTC2 PHE 486 variant 486 46 2 9ELG GLU C 175 ? UNP P0DTC2 GLN 493 conflict 493 47 2 9ELG ARG C 180 ? UNP P0DTC2 GLN 498 variant 498 48 2 9ELG TYR C 183 ? UNP P0DTC2 ASN 501 variant 501 49 2 9ELG HIS C 187 ? UNP P0DTC2 TYR 505 variant 505 50 2 9ELG LYS C 236 ? UNP P0DTC2 GLU 554 conflict 554 51 2 9ELG VAL C 252 ? UNP P0DTC2 ALA 570 conflict 570 52 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 148 ? GLY A 151 ? SER A 152 GLY A 155 5 ? 4 HELX_P HELX_P2 AA2 PRO B 20 ? ASN B 26 ? PRO C 337 ASN C 343 1 ? 7 HELX_P HELX_P3 AA3 SER B 32 ? TRP B 36 ? SER C 349 TRP C 353 5 ? 5 HELX_P HELX_P4 AA4 SER B 49 ? ALA B 55 ? SER C 366 ALA C 372 1 ? 7 HELX_P HELX_P5 AA5 LYS B 69 ? ASP B 72 ? LYS C 386 ASP C 389 5 ? 4 HELX_P HELX_P6 AA6 ASN B 88 ? ALA B 94 ? ASN C 405 ALA C 411 5 ? 7 HELX_P HELX_P7 AA7 GLY B 99 ? ASN B 105 ? GLY C 416 ASN C 422 1 ? 7 HELX_P HELX_P8 AA8 GLY B 184 ? HIS B 187 ? GLY C 502 HIS C 505 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 125 SG ? ? ? 1_555 A CYS 159 SG ? ? A CYS 129 A CYS 163 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf2 disulf ? ? B CYS 19 SG ? ? ? 1_555 B CYS 44 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? B CYS 62 SG ? ? ? 1_555 B CYS 115 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? B CYS 74 SG ? ? ? 1_555 B CYS 207 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf5 disulf ? ? B CYS 163 SG ? ? ? 1_555 B CYS 170 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf6 disulf ? ? B CYS 220 SG ? ? ? 1_555 B CYS 272 SG ? ? C CYS 538 C CYS 590 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 27 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 30 A NAG 301 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation covale2 covale one ? A ASN 57 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 61 A NAG 302 1_555 ? ? ? ? ? ? ? 1.433 ? N-Glycosylation covale3 covale one ? A ASN 116 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 120 A NAG 304 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale4 covale one ? A ASN 158 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 162 A NAG 305 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale5 covale one ? A ASN 226 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 230 A NAG 303 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale6 covale one ? A ASN 237 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 241 A NAG 306 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale7 covale one ? A ASN 274 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 278 A NAG 307 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale8 covale one ? B ASN 14 ND2 ? ? ? 1_555 K NAG . C1 ? ? C ASN 331 C NAG 601 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation covale9 covale one ? B ASN 26 ND2 ? ? ? 1_555 L NAG . C1 ? ? C ASN 343 C NAG 602 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale10 covale one ? B ASN 37 ND2 ? ? ? 1_555 C NAG . C1 ? ? C ASN 354 B NAG 1 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation covale11 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN B 37 ? NAG B 1 ? 1_555 ASN C 354 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG D . ? ASN A 27 ? NAG A 301 ? 1_555 ASN A 30 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG E . ? ASN A 57 ? NAG A 302 ? 1_555 ASN A 61 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG F . ? ASN A 226 ? NAG A 303 ? 1_555 ASN A 230 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 NAG G . ? ASN A 116 ? NAG A 304 ? 1_555 ASN A 120 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 6 NAG H . ? ASN A 158 ? NAG A 305 ? 1_555 ASN A 162 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 7 NAG I . ? ASN A 237 ? NAG A 306 ? 1_555 ASN A 241 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 8 NAG J . ? ASN A 274 ? NAG A 307 ? 1_555 ASN A 278 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 9 NAG K . ? ASN B 14 ? NAG C 601 ? 1_555 ASN C 331 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 10 NAG L . ? ASN B 26 ? NAG C 602 ? 1_555 ASN C 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 11 CYS A 125 ? CYS A 159 ? CYS A 129 ? 1_555 CYS A 163 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS B 19 ? CYS B 44 ? CYS C 336 ? 1_555 CYS C 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS B 62 ? CYS B 115 ? CYS C 379 ? 1_555 CYS C 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS B 74 ? CYS B 207 ? CYS C 391 ? 1_555 CYS C 525 ? 1_555 SG SG . . . None 'Disulfide bridge' 15 CYS B 163 ? CYS B 170 ? CYS C 480 ? 1_555 CYS C 488 ? 1_555 SG SG . . . None 'Disulfide bridge' 16 CYS B 220 ? CYS B 272 ? CYS C 538 ? 1_555 CYS C 590 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 22 ? TYR A 25 ? THR A 25 TYR A 28 AA1 2 VAL A 58 ? ALA A 63 ? VAL A 62 ALA A 67 AA1 3 ALA A 255 ? TYR A 261 ? ALA A 259 TYR A 265 AA1 4 GLY A 83 ? SER A 88 ? GLY A 87 SER A 92 AA1 5 ASN A 181 ? ILE A 190 ? ASN A 185 ILE A 194 AA1 6 TYR A 193 ? PRO A 202 ? TYR A 197 PRO A 206 AA1 7 GLU A 216 ? PRO A 222 ? GLU A 220 PRO A 226 AA2 1 VAL A 38 ? PHE A 39 ? VAL A 42 PHE A 43 AA2 2 PHE B 247 ? ARG B 249 ? PHE C 565 ARG C 567 AA2 3 THR B 255 ? ARG B 259 ? THR C 573 ARG C 577 AA2 4 ILE B 266 ? THR B 270 ? ILE C 584 THR C 588 AA2 5 LEU B 228 ? LYS B 236 ? LEU C 546 LYS C 554 AA2 6 CYS B 220 ? PHE B 225 ? CYS C 538 PHE C 543 AA2 7 SER B 8 ? ARG B 11 ? SER C 325 ARG C 328 AA3 1 VAL A 43 ? PHE A 51 ? VAL A 47 PHE A 55 AA3 2 GLN A 263 ? TYR A 271 ? GLN A 267 TYR A 275 AA3 3 ILE A 277 ? ASP A 282 ? ILE A 281 ASP A 286 AA4 1 LEU A 78 ? PRO A 79 ? LEU A 82 PRO A 83 AA4 2 ARG A 229 ? ASN A 237 ? ARG A 233 ASN A 241 AA4 3 LEU A 135 ? VAL A 137 ? LEU A 139 VAL A 141 AA5 1 LEU A 78 ? PRO A 79 ? LEU A 82 PRO A 83 AA5 2 ARG A 229 ? ASN A 237 ? ARG A 233 ASN A 241 AA5 3 ILE A 95 ? GLY A 101 ? ILE A 99 GLY A 105 AA5 4 SER A 110 ? ASN A 115 ? SER A 114 ASN A 119 AA5 5 VAL A 120 ? PHE A 129 ? VAL A 124 PHE A 133 AA5 6 TYR A 153 ? SER A 165 ? TYR A 157 SER A 169 AA6 1 ASN B 37 ? ILE B 41 ? ASN C 354 ILE C 358 AA6 2 VAL B 78 ? LYS B 86 ? VAL C 395 LYS C 403 AA6 3 PRO B 189 ? PHE B 197 ? PRO C 507 PHE C 515 AA6 4 CYS B 115 ? ASN B 120 ? CYS C 432 ASN C 437 AA7 1 CYS B 74 ? PHE B 75 ? CYS C 391 PHE C 392 AA7 2 VAL B 206 ? CYS B 207 ? VAL C 524 CYS C 525 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 25 ? N TYR A 28 O VAL A 58 ? O VAL A 62 AA1 2 3 N PHE A 61 ? N PHE A 65 O TYR A 257 ? O TYR A 261 AA1 3 4 O TYR A 258 ? O TYR A 262 N ALA A 87 ? N ALA A 91 AA1 4 5 N PHE A 86 ? N PHE A 90 O PHE A 185 ? O PHE A 189 AA1 5 6 N GLU A 184 ? N GLU A 188 O LYS A 199 ? O LYS A 203 AA1 6 7 N ILE A 196 ? N ILE A 200 O LEU A 218 ? O LEU A 222 AA2 1 2 N PHE A 39 ? N PHE A 43 O ARG B 249 ? O ARG C 567 AA2 2 3 N GLY B 248 ? N GLY C 566 O ASP B 256 ? O ASP C 574 AA2 3 4 N VAL B 258 ? N VAL C 576 O LEU B 267 ? O LEU C 585 AA2 4 5 O THR B 270 ? O THR C 588 N VAL B 233 ? N VAL C 551 AA2 5 6 O GLY B 232 ? O GLY C 550 N VAL B 221 ? N VAL C 539 AA2 6 7 O ASN B 222 ? O ASN C 540 N ILE B 9 ? N ILE C 326 AA3 1 2 N VAL A 43 ? N VAL A 47 O TYR A 271 ? O TYR A 275 AA3 2 3 N LYS A 270 ? N LYS A 274 O ASP A 279 ? O ASP A 283 AA4 1 2 N LEU A 78 ? N LEU A 82 O PHE A 230 ? O PHE A 234 AA4 2 3 O LEU A 234 ? O LEU A 238 N LEU A 135 ? N LEU A 139 AA5 1 2 N LEU A 78 ? N LEU A 82 O PHE A 230 ? O PHE A 234 AA5 2 3 O ARG A 229 ? O ARG A 233 N GLY A 101 ? N GLY A 105 AA5 3 4 N ARG A 96 ? N ARG A 100 O ASN A 115 ? O ASN A 119 AA5 4 5 N LEU A 112 ? N LEU A 116 O LYS A 123 ? O LYS A 127 AA5 5 6 N VAL A 124 ? N VAL A 128 O PHE A 161 ? O PHE A 165 AA6 1 2 N ILE B 41 ? N ILE C 358 O VAL B 78 ? O VAL C 395 AA6 2 3 N PHE B 83 ? N PHE C 400 O VAL B 192 ? O VAL C 510 AA6 3 4 O LEU B 195 ? O LEU C 513 N CYS B 115 ? N CYS C 432 AA7 1 2 N PHE B 75 ? N PHE C 392 O VAL B 206 ? O VAL C 524 # _pdbx_entry_details.entry_id 9ELG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OH C TYR 453 ? ? OE1 C GLU 493 ? ? 2.15 2 1 ND2 A ASN 30 ? ? O5 A NAG 301 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C C THR 588 ? ? N C PRO 589 ? ? CD C PRO 589 ? ? 113.61 128.40 -14.79 2.10 Y 2 1 CA C PRO 589 ? ? N C PRO 589 ? ? CD C PRO 589 ? ? 100.80 111.70 -10.90 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 33 ? ? -106.50 62.88 2 1 ASN A 85 ? ? 54.60 -123.91 3 1 ARG A 100 ? ? -140.70 47.73 4 1 THR A 106 ? ? -106.41 -77.79 5 1 LYS C 378 ? ? 39.28 42.06 6 1 TYR C 423 ? ? -153.66 89.10 7 1 PHE C 464 ? ? 59.59 16.51 8 1 CYS C 480 ? ? 64.81 78.26 9 1 ASN C 487 ? ? -155.54 -14.51 10 1 SER C 494 ? ? 77.98 149.45 11 1 HIS C 519 ? ? 58.25 -121.00 12 1 ALA C 520 ? ? -155.83 61.97 13 1 ASN C 544 ? ? 53.36 -115.67 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 76 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.200 _pdbx_validate_planes.type 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9ELG _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9ELG _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.71 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 98127 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'SARS-CoV-2 Omicron KP.3.1.1 Spike RBD with NTD' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9ELG _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 1700 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9ELG _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9ELG _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 4 ? A MET 1 2 1 Y 1 A PHE 5 ? A PHE 2 3 1 Y 1 A VAL 6 ? A VAL 3 4 1 Y 1 A PHE 7 ? A PHE 4 5 1 Y 1 A LEU 8 ? A LEU 5 6 1 Y 1 A VAL 9 ? A VAL 6 7 1 Y 1 A LEU 10 ? A LEU 7 8 1 Y 1 A LEU 11 ? A LEU 8 9 1 Y 1 A PRO 12 ? A PRO 9 10 1 Y 1 A LEU 13 ? A LEU 10 11 1 Y 1 A VAL 14 ? A VAL 11 12 1 Y 1 A SER 15 ? A SER 12 13 1 Y 1 A SER 16 ? A SER 13 14 1 Y 1 A GLN 17 ? A GLN 14 15 1 Y 1 A CYS 18 ? A CYS 15 16 1 Y 1 A VAL 19 ? A VAL 16 17 1 Y 1 A ASN 20 ? A ASN 17 18 1 Y 1 A LEU 21 ? A LEU 18 19 1 Y 1 A ILE 22 ? A ILE 19 20 1 Y 1 A GLY 70 ? A GLY 66 21 1 Y 1 A THR 71 ? A THR 67 22 1 Y 1 A ASN 72 ? A ASN 68 23 1 Y 1 A HIS 143 ? A HIS 139 24 1 Y 1 A LYS 144 ? A LYS 140 25 1 Y 1 A ASN 145 ? A ASN 141 26 1 Y 1 A ASN 146 ? A ASN 142 27 1 Y 1 A LYS 147 ? A LYS 143 28 1 Y 1 A SER 148 ? A SER 144 29 1 Y 1 A TRP 149 ? A TRP 145 30 1 Y 1 A MET 174 ? A MET 170 31 1 Y 1 A ASP 175 ? A ASP 171 32 1 Y 1 A LEU 176 ? A LEU 172 33 1 Y 1 A GLU 177 ? A GLU 173 34 1 Y 1 A GLY 178 ? A GLY 174 35 1 Y 1 A LYS 179 ? A LYS 175 36 1 Y 1 A GLN 180 ? A GLN 176 37 1 Y 1 A GLY 181 ? A GLY 177 38 1 Y 1 A ASN 182 ? A ASN 178 39 1 Y 1 A PHE 183 ? A PHE 179 40 1 Y 1 A LEU 245 ? A LEU 241 41 1 Y 1 A THR 246 ? A THR 242 42 1 Y 1 A PRO 247 ? A PRO 243 43 1 Y 1 A GLY 248 ? A GLY 244 44 1 Y 1 A ASP 249 ? A ASP 245 45 1 Y 1 A SER 250 ? A SER 246 46 1 Y 1 A SER 251 ? A SER 247 47 1 Y 1 A SER 252 ? A SER 248 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.current_status REL _em_admin.deposition_date 2024-12-04 _em_admin.deposition_site RCSB _em_admin.entry_id 9ELG _em_admin.last_update 2025-07-16 _em_admin.map_release_date 2025-05-28 _em_admin.title 'Cryo-EM structure of SARS-CoV-2 Omicron KP.3.1.1 spike RBD and NTD (local refinement of RBD and NTD)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 44.84 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Bill & Melinda Gates Foundation' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number INV-004923 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n # _atom_sites.entry_id 9ELG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #