HEADER FLAVOPROTEIN 07-MAR-24 9EM4 TITLE OPR3 VARIANT Y364P IN ITS DIMERIC FORM OBTAINED WITH AMMONIUM SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 12-OXOPHYTODIENOATE REDUCTASE 3; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: 12-OXOPHYTODIENOATE-10,11-REDUCTASE 3,OPDA-REDUCTASE 3, COMPND 5 LEOPR3; COMPND 6 EC: 1.3.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: OPR3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENE-REDUCTASE, OLD YELLOW ENZYME, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BIJELIC,P.MACHEROUX,B.KERSCHBAUMER REVDAT 2 21-AUG-24 9EM4 1 JRNL REVDAT 1 14-AUG-24 9EM4 0 JRNL AUTH B.KERSCHBAUMER,P.MACHEROUX,A.BIJELIC JRNL TITL ANALYSIS OF HOMODIMER FORMATION IN 12-OXOPHYTODIENOATE JRNL TITL 2 REDUCTASE 3 IN SOLUTIO AND CRYSTALLO CHALLENGES THE JRNL TITL 3 PHYSIOLOGICAL ROLE OF THE DIMER. JRNL REF SCI REP V. 14 18093 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 39103552 JRNL DOI 10.1038/S41598-024-69160-6 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 51234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5000 - 5.2700 1.00 2802 132 0.1701 0.2000 REMARK 3 2 5.2700 - 4.1800 1.00 2737 149 0.1575 0.1768 REMARK 3 3 4.1800 - 3.6600 1.00 2756 131 0.1649 0.1998 REMARK 3 4 3.6500 - 3.3200 1.00 2766 123 0.1912 0.2423 REMARK 3 5 3.3200 - 3.0800 1.00 2754 100 0.2112 0.2503 REMARK 3 6 3.0800 - 2.9000 1.00 2696 157 0.2249 0.2721 REMARK 3 7 2.9000 - 2.7600 1.00 2726 154 0.2372 0.3015 REMARK 3 8 2.7600 - 2.6400 1.00 2718 146 0.2378 0.2564 REMARK 3 9 2.6400 - 2.5300 1.00 2670 174 0.2400 0.2830 REMARK 3 10 2.5300 - 2.4500 1.00 2728 164 0.2347 0.2905 REMARK 3 11 2.4500 - 2.3700 1.00 2696 109 0.2571 0.2922 REMARK 3 12 2.3700 - 2.3000 1.00 2743 126 0.2621 0.3323 REMARK 3 13 2.3000 - 2.2400 1.00 2734 122 0.2833 0.3210 REMARK 3 14 2.2400 - 2.1900 1.00 2728 134 0.2788 0.3037 REMARK 3 15 2.1900 - 2.1400 1.00 2710 124 0.2862 0.3356 REMARK 3 16 2.1400 - 2.0900 1.00 2738 152 0.2976 0.3312 REMARK 3 17 2.0900 - 2.0500 1.00 2670 154 0.3150 0.3243 REMARK 3 18 2.0500 - 2.0100 0.88 2392 119 0.3245 0.3517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5854 REMARK 3 ANGLE : 0.742 7993 REMARK 3 CHIRALITY : 0.048 887 REMARK 3 PLANARITY : 0.008 1042 REMARK 3 DIHEDRAL : 13.143 2068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4771 11.3572 -4.8974 REMARK 3 T TENSOR REMARK 3 T11: 1.1180 T22: 0.6896 REMARK 3 T33: 0.6028 T12: -0.0445 REMARK 3 T13: 0.0530 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 2.6215 L22: 0.7225 REMARK 3 L33: 3.9455 L12: -0.3195 REMARK 3 L13: -0.0595 L23: -0.3588 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: 0.2251 S13: 0.2972 REMARK 3 S21: -0.3302 S22: 0.2332 S23: 0.1672 REMARK 3 S31: -0.6373 S32: -0.5017 S33: -0.1149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1650 7.5866 0.3289 REMARK 3 T TENSOR REMARK 3 T11: 1.0546 T22: 0.6244 REMARK 3 T33: 0.5663 T12: -0.1547 REMARK 3 T13: 0.2349 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.7511 L22: 0.9911 REMARK 3 L33: 4.2314 L12: -0.3016 REMARK 3 L13: 0.0239 L23: -1.1748 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: 0.0924 S13: 0.1842 REMARK 3 S21: -0.4002 S22: 0.1066 S23: -0.3887 REMARK 3 S31: -0.4240 S32: 0.8176 S33: 0.0515 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6597 -2.7398 -14.6368 REMARK 3 T TENSOR REMARK 3 T11: 0.8977 T22: 0.6173 REMARK 3 T33: 0.5721 T12: 0.0189 REMARK 3 T13: 0.1459 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.4435 L22: 0.0444 REMARK 3 L33: 2.4589 L12: 0.1422 REMARK 3 L13: -1.0450 L23: -0.3348 REMARK 3 S TENSOR REMARK 3 S11: 0.2470 S12: 0.0416 S13: 0.0563 REMARK 3 S21: 0.3955 S22: 0.1749 S23: 0.4263 REMARK 3 S31: 0.0249 S32: 0.4519 S33: -0.4048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 297 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1152 -3.4456 -11.7203 REMARK 3 T TENSOR REMARK 3 T11: 1.1681 T22: 0.7175 REMARK 3 T33: 0.6738 T12: -0.1467 REMARK 3 T13: 0.1065 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.0431 L22: 2.0056 REMARK 3 L33: 2.4132 L12: -0.4192 REMARK 3 L13: 0.5706 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.4956 S13: -0.4194 REMARK 3 S21: -0.6464 S22: -0.0120 S23: 0.3887 REMARK 3 S31: 0.5387 S32: -0.2855 S33: 0.0166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4614 -3.5804 -43.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.2675 REMARK 3 T33: 0.2435 T12: 0.0017 REMARK 3 T13: 0.0490 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.4531 L22: 2.4681 REMARK 3 L33: 0.8246 L12: -0.1093 REMARK 3 L13: 0.2334 L23: -0.4274 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.1234 S13: -0.0049 REMARK 3 S21: -0.0629 S22: 0.0261 S23: -0.2070 REMARK 3 S31: 0.0633 S32: 0.1029 S33: -0.0367 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9726 11.3046 -41.1935 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2489 REMARK 3 T33: 0.3246 T12: -0.0054 REMARK 3 T13: 0.0233 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.3948 L22: 3.9666 REMARK 3 L33: 2.3752 L12: 0.1342 REMARK 3 L13: 1.0118 L23: 0.7218 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.0561 S13: 0.4016 REMARK 3 S21: 0.2134 S22: 0.0763 S23: -0.0588 REMARK 3 S31: -0.2552 S32: 0.0259 S33: -0.0449 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2670 9.5287 -34.0785 REMARK 3 T TENSOR REMARK 3 T11: 0.4922 T22: 0.3933 REMARK 3 T33: 0.4268 T12: -0.0327 REMARK 3 T13: 0.0874 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.5202 L22: 1.5307 REMARK 3 L33: 7.6330 L12: -0.4740 REMARK 3 L13: -2.7684 L23: 1.2036 REMARK 3 S TENSOR REMARK 3 S11: 0.1992 S12: -0.2794 S13: 0.1149 REMARK 3 S21: 0.4763 S22: -0.2090 S23: 0.2014 REMARK 3 S31: -0.1688 S32: -0.3912 S33: -0.0755 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2707 2.0964 -41.3487 REMARK 3 T TENSOR REMARK 3 T11: 0.2778 T22: 0.2891 REMARK 3 T33: 0.3540 T12: 0.0093 REMARK 3 T13: 0.0542 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.7859 L22: 2.7615 REMARK 3 L33: 0.8229 L12: 0.3548 REMARK 3 L13: 0.2490 L23: -0.4029 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0042 S13: 0.1952 REMARK 3 S21: -0.0155 S22: 0.0653 S23: 0.4405 REMARK 3 S31: -0.1220 S32: -0.1153 S33: -0.0479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/TRIS (6.5), 10 MM AMMONIUM REMARK 280 SULFATE, 8-16% PEG8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.82000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 ASN B 9 REMARK 465 ASN B 10 REMARK 465 GLN B 385 REMARK 465 GLY B 386 REMARK 465 ASN B 387 REMARK 465 GLY B 388 REMARK 465 SER B 389 REMARK 465 ASN B 390 REMARK 465 GLY B 391 REMARK 465 PRO B 392 REMARK 465 LEU B 393 REMARK 465 SER B 394 REMARK 465 ARG B 395 REMARK 465 LEU B 396 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 465 GLY A 388 REMARK 465 SER A 389 REMARK 465 ASN A 390 REMARK 465 GLY A 391 REMARK 465 PRO A 392 REMARK 465 LEU A 393 REMARK 465 SER A 394 REMARK 465 ARG A 395 REMARK 465 LEU A 396 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 41 CG1 CG2 CD1 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ILE B 126 CG1 CG2 CD1 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 ILE B 148 CG1 CG2 CD1 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 158 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 470 THR B 204 OG1 CG2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLN B 220 CG CD OE1 NE2 REMARK 470 ASP B 243 CG OD1 OD2 REMARK 470 MET B 248 CG SD CE REMARK 470 SER B 250 OG REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 ARG B 262 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 HIS B 269 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 284 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 285 CG1 CG2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 324 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 ILE B 328 CG1 CG2 CD1 REMARK 470 GLU B 329 CG CD OE1 OE2 REMARK 470 GLN B 333 CG CD OE1 NE2 REMARK 470 MET B 353 CG SD CE REMARK 470 LYS B 356 CG CD CE NZ REMARK 470 LYS B 363 CG CD CE NZ REMARK 470 ARG B 366 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 VAL B 376 CG1 CG2 REMARK 470 LEU B 384 CG CD1 CD2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 TYR A 287 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 GLN A 385 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 281 C PRO B 282 N 0.181 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 63 155.22 -49.35 REMARK 500 ILE B 80 17.50 -144.52 REMARK 500 ALA B 113 34.80 -78.48 REMARK 500 HIS B 115 -109.94 -109.03 REMARK 500 GLU B 116 -31.00 -158.69 REMARK 500 VAL B 117 1.46 -67.31 REMARK 500 SER B 239 80.46 -150.48 REMARK 500 ASP B 243 62.70 -100.85 REMARK 500 ALA B 247 75.41 -108.19 REMARK 500 ARG B 283 79.34 53.15 REMARK 500 ASP B 350 45.66 -97.64 REMARK 500 VAL B 375 -52.07 -123.62 REMARK 500 TYR B 378 -60.95 -124.40 REMARK 500 GLU A 63 155.23 -48.38 REMARK 500 ILE A 80 27.92 -141.62 REMARK 500 ALA A 247 72.51 -108.49 REMARK 500 GLU A 298 33.86 -97.94 REMARK 500 ASP A 350 45.24 -97.62 REMARK 500 VAL A 375 -51.88 -123.75 REMARK 500 TYR A 378 -61.27 -125.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 153 0.10 SIDE CHAIN REMARK 500 ARG A 169 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 281 12.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 9EM4 B 1 396 UNP Q9FEW9 OPR3_SOLLC 1 396 DBREF 9EM4 A 1 396 UNP Q9FEW9 OPR3_SOLLC 1 396 SEQADV 9EM4 HIS B -5 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS B -4 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS B -3 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS B -2 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS B -1 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS B 0 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 PRO B 364 UNP Q9FEW9 TYR 364 ENGINEERED MUTATION SEQADV 9EM4 HIS A -5 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS A -4 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS A -3 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS A -2 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS A -1 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 HIS A 0 UNP Q9FEW9 EXPRESSION TAG SEQADV 9EM4 PRO A 364 UNP Q9FEW9 TYR 364 ENGINEERED MUTATION SEQRES 1 B 402 HIS HIS HIS HIS HIS HIS MET ALA SER SER ALA GLN ASP SEQRES 2 B 402 GLY ASN ASN PRO LEU PHE SER PRO TYR LYS MET GLY LYS SEQRES 3 B 402 PHE ASN LEU SER HIS ARG VAL VAL LEU ALA PRO MET THR SEQRES 4 B 402 ARG CYS ARG ALA LEU ASN ASN ILE PRO GLN ALA ALA LEU SEQRES 5 B 402 GLY GLU TYR TYR GLU GLN ARG ALA THR ALA GLY GLY PHE SEQRES 6 B 402 LEU ILE THR GLU GLY THR MET ILE SER PRO THR SER ALA SEQRES 7 B 402 GLY PHE PRO HIS VAL PRO GLY ILE PHE THR LYS GLU GLN SEQRES 8 B 402 VAL ARG GLU TRP LYS LYS ILE VAL ASP VAL VAL HIS ALA SEQRES 9 B 402 LYS GLY ALA VAL ILE PHE CYS GLN LEU TRP HIS VAL GLY SEQRES 10 B 402 ARG ALA SER HIS GLU VAL TYR GLN PRO ALA GLY ALA ALA SEQRES 11 B 402 PRO ILE SER SER THR GLU LYS PRO ILE SER ASN ARG TRP SEQRES 12 B 402 ARG ILE LEU MET PRO ASP GLY THR HIS GLY ILE TYR PRO SEQRES 13 B 402 LYS PRO ARG ALA ILE GLY THR TYR GLU ILE SER GLN VAL SEQRES 14 B 402 VAL GLU ASP TYR ARG ARG SER ALA LEU ASN ALA ILE GLU SEQRES 15 B 402 ALA GLY PHE ASP GLY ILE GLU ILE HIS GLY ALA HIS GLY SEQRES 16 B 402 TYR LEU ILE ASP GLN PHE LEU LYS ASP GLY ILE ASN ASP SEQRES 17 B 402 ARG THR ASP GLU TYR GLY GLY SER LEU ALA ASN ARG CYS SEQRES 18 B 402 LYS PHE ILE THR GLN VAL VAL GLN ALA VAL VAL SER ALA SEQRES 19 B 402 ILE GLY ALA ASP ARG VAL GLY VAL ARG VAL SER PRO ALA SEQRES 20 B 402 ILE ASP HIS LEU ASP ALA MET ASP SER ASN PRO LEU SER SEQRES 21 B 402 LEU GLY LEU ALA VAL VAL GLU ARG LEU ASN LYS ILE GLN SEQRES 22 B 402 LEU HIS SER GLY SER LYS LEU ALA TYR LEU HIS VAL THR SEQRES 23 B 402 GLN PRO ARG TYR VAL ALA TYR GLY GLN THR GLU ALA GLY SEQRES 24 B 402 ARG LEU GLY SER GLU GLU GLU GLU ALA ARG LEU MET ARG SEQRES 25 B 402 THR LEU ARG ASN ALA TYR GLN GLY THR PHE ILE CYS SER SEQRES 26 B 402 GLY GLY TYR THR ARG GLU LEU GLY ILE GLU ALA VAL ALA SEQRES 27 B 402 GLN GLY ASP ALA ASP LEU VAL SER TYR GLY ARG LEU PHE SEQRES 28 B 402 ILE SER ASN PRO ASP LEU VAL MET ARG ILE LYS LEU ASN SEQRES 29 B 402 ALA PRO LEU ASN LYS PRO ASN ARG LYS THR PHE TYR THR SEQRES 30 B 402 GLN ASP PRO VAL VAL GLY TYR THR ASP TYR PRO PHE LEU SEQRES 31 B 402 GLN GLY ASN GLY SER ASN GLY PRO LEU SER ARG LEU SEQRES 1 A 402 HIS HIS HIS HIS HIS HIS MET ALA SER SER ALA GLN ASP SEQRES 2 A 402 GLY ASN ASN PRO LEU PHE SER PRO TYR LYS MET GLY LYS SEQRES 3 A 402 PHE ASN LEU SER HIS ARG VAL VAL LEU ALA PRO MET THR SEQRES 4 A 402 ARG CYS ARG ALA LEU ASN ASN ILE PRO GLN ALA ALA LEU SEQRES 5 A 402 GLY GLU TYR TYR GLU GLN ARG ALA THR ALA GLY GLY PHE SEQRES 6 A 402 LEU ILE THR GLU GLY THR MET ILE SER PRO THR SER ALA SEQRES 7 A 402 GLY PHE PRO HIS VAL PRO GLY ILE PHE THR LYS GLU GLN SEQRES 8 A 402 VAL ARG GLU TRP LYS LYS ILE VAL ASP VAL VAL HIS ALA SEQRES 9 A 402 LYS GLY ALA VAL ILE PHE CYS GLN LEU TRP HIS VAL GLY SEQRES 10 A 402 ARG ALA SER HIS GLU VAL TYR GLN PRO ALA GLY ALA ALA SEQRES 11 A 402 PRO ILE SER SER THR GLU LYS PRO ILE SER ASN ARG TRP SEQRES 12 A 402 ARG ILE LEU MET PRO ASP GLY THR HIS GLY ILE TYR PRO SEQRES 13 A 402 LYS PRO ARG ALA ILE GLY THR TYR GLU ILE SER GLN VAL SEQRES 14 A 402 VAL GLU ASP TYR ARG ARG SER ALA LEU ASN ALA ILE GLU SEQRES 15 A 402 ALA GLY PHE ASP GLY ILE GLU ILE HIS GLY ALA HIS GLY SEQRES 16 A 402 TYR LEU ILE ASP GLN PHE LEU LYS ASP GLY ILE ASN ASP SEQRES 17 A 402 ARG THR ASP GLU TYR GLY GLY SER LEU ALA ASN ARG CYS SEQRES 18 A 402 LYS PHE ILE THR GLN VAL VAL GLN ALA VAL VAL SER ALA SEQRES 19 A 402 ILE GLY ALA ASP ARG VAL GLY VAL ARG VAL SER PRO ALA SEQRES 20 A 402 ILE ASP HIS LEU ASP ALA MET ASP SER ASN PRO LEU SER SEQRES 21 A 402 LEU GLY LEU ALA VAL VAL GLU ARG LEU ASN LYS ILE GLN SEQRES 22 A 402 LEU HIS SER GLY SER LYS LEU ALA TYR LEU HIS VAL THR SEQRES 23 A 402 GLN PRO ARG TYR VAL ALA TYR GLY GLN THR GLU ALA GLY SEQRES 24 A 402 ARG LEU GLY SER GLU GLU GLU GLU ALA ARG LEU MET ARG SEQRES 25 A 402 THR LEU ARG ASN ALA TYR GLN GLY THR PHE ILE CYS SER SEQRES 26 A 402 GLY GLY TYR THR ARG GLU LEU GLY ILE GLU ALA VAL ALA SEQRES 27 A 402 GLN GLY ASP ALA ASP LEU VAL SER TYR GLY ARG LEU PHE SEQRES 28 A 402 ILE SER ASN PRO ASP LEU VAL MET ARG ILE LYS LEU ASN SEQRES 29 A 402 ALA PRO LEU ASN LYS PRO ASN ARG LYS THR PHE TYR THR SEQRES 30 A 402 GLN ASP PRO VAL VAL GLY TYR THR ASP TYR PRO PHE LEU SEQRES 31 A 402 GLN GLY ASN GLY SER ASN GLY PRO LEU SER ARG LEU HET FMN B 401 31 HET FMN A 401 31 HET SO4 A 402 5 HET MES A 403 12 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 SO4 O4 S 2- FORMUL 6 MES C6 H13 N O4 S FORMUL 7 HOH *158(H2 O) HELIX 1 AA1 ALA B 37 ILE B 41 5 5 HELIX 2 AA2 GLN B 43 ALA B 54 1 12 HELIX 3 AA3 THR B 82 LYS B 99 1 18 HELIX 4 AA4 GLY B 156 ALA B 177 1 22 HELIX 5 AA5 TYR B 190 LYS B 197 1 8 HELIX 6 AA6 SER B 210 CYS B 215 1 6 HELIX 7 AA7 CYS B 215 GLY B 230 1 16 HELIX 8 AA8 ASN B 251 GLY B 271 1 21 HELIX 9 AA9 SER B 297 TYR B 312 1 16 HELIX 10 AB1 THR B 323 GLN B 333 1 11 HELIX 11 AB2 GLY B 342 ASN B 348 1 7 HELIX 12 AB3 ASP B 350 ASN B 358 1 9 HELIX 13 AB4 ASN B 365 PHE B 369 5 5 HELIX 14 AB5 ASN A 10 SER A 14 5 5 HELIX 15 AB6 ALA A 37 ILE A 41 5 5 HELIX 16 AB7 GLN A 43 ALA A 54 1 12 HELIX 17 AB8 THR A 82 LYS A 99 1 18 HELIX 18 AB9 HIS A 115 ALA A 123 5 9 HELIX 19 AC1 GLY A 156 GLY A 178 1 23 HELIX 20 AC2 TYR A 190 LYS A 197 1 8 HELIX 21 AC3 SER A 210 CYS A 215 1 6 HELIX 22 AC4 CYS A 215 GLY A 230 1 16 HELIX 23 AC5 ASN A 251 GLY A 271 1 21 HELIX 24 AC6 GLU A 298 TYR A 312 1 15 HELIX 25 AC7 THR A 323 GLN A 333 1 11 HELIX 26 AC8 GLY A 342 ASN A 348 1 7 HELIX 27 AC9 ASP A 350 ASN A 358 1 9 HELIX 28 AD1 ASN A 365 PHE A 369 5 5 SHEET 1 AA1 2 TYR B 16 MET B 18 0 SHEET 2 AA1 2 PHE B 21 LEU B 23 -1 O LEU B 23 N TYR B 16 SHEET 1 AA2 9 VAL B 27 LEU B 29 0 SHEET 2 AA2 9 PHE B 59 MET B 66 1 O PHE B 59 N LEU B 29 SHEET 3 AA2 9 VAL B 102 TRP B 108 1 O TRP B 108 N THR B 65 SHEET 4 AA2 9 GLY B 181 GLY B 186 1 O GLU B 183 N LEU B 107 SHEET 5 AA2 9 VAL B 234 VAL B 238 1 O GLY B 235 N ILE B 182 SHEET 6 AA2 9 TYR B 276 THR B 280 1 O HIS B 278 N VAL B 236 SHEET 7 AA2 9 PHE B 316 SER B 319 1 O ILE B 317 N VAL B 279 SHEET 8 AA2 9 LEU B 338 TYR B 341 1 O SER B 340 N CYS B 318 SHEET 9 AA2 9 VAL B 27 LEU B 29 1 N VAL B 28 O TYR B 341 SHEET 1 AA3 2 ILE B 126 SER B 127 0 SHEET 2 AA3 2 ARG B 153 ALA B 154 1 O ARG B 153 N SER B 127 SHEET 1 AA4 2 ILE B 139 LEU B 140 0 SHEET 2 AA4 2 HIS B 146 GLY B 147 -1 O GLY B 147 N ILE B 139 SHEET 1 AA5 2 TYR A 16 MET A 18 0 SHEET 2 AA5 2 PHE A 21 LEU A 23 -1 O LEU A 23 N TYR A 16 SHEET 1 AA6 9 VAL A 27 LEU A 29 0 SHEET 2 AA6 9 PHE A 59 MET A 66 1 O PHE A 59 N LEU A 29 SHEET 3 AA6 9 VAL A 102 TRP A 108 1 O VAL A 102 N LEU A 60 SHEET 4 AA6 9 GLY A 181 GLY A 186 1 O GLU A 183 N LEU A 107 SHEET 5 AA6 9 VAL A 234 VAL A 238 1 O GLY A 235 N ILE A 182 SHEET 6 AA6 9 TYR A 276 THR A 280 1 O HIS A 278 N VAL A 236 SHEET 7 AA6 9 PHE A 316 SER A 319 1 O ILE A 317 N LEU A 277 SHEET 8 AA6 9 LEU A 338 TYR A 341 1 O SER A 340 N CYS A 318 SHEET 9 AA6 9 VAL A 27 LEU A 29 1 N VAL A 28 O TYR A 341 SHEET 1 AA7 2 ILE A 126 SER A 127 0 SHEET 2 AA7 2 ARG A 153 ALA A 154 1 O ARG A 153 N SER A 127 SHEET 1 AA8 2 ILE A 139 LEU A 140 0 SHEET 2 AA8 2 HIS A 146 GLY A 147 -1 O GLY A 147 N ILE A 139 CRYST1 57.531 89.640 80.943 90.00 109.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017382 0.000000 0.005988 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013067 0.00000