HEADER TRANSFERASE 08-MAR-24 9EMH TITLE KOD-H4 DNA POLYMERASE MUTANT IN A BINARY COMPLEX WITH DNA:DNA TITLE 2 CONTAINING TWO HNA NUCLEOTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*CP*A)-3'); COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*AP*AP*CP*(6HT)P*(6HG) COMPND 12 P*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'); COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE, XNA, MODIFIED NUCLEOTIDES, REVERSE TRANSCRIPTASE, HNA, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.GUTFREUND,K.BETZ REVDAT 1 24-SEP-25 9EMH 0 JRNL AUTH C.GUTFREUND,K.BETZ JRNL TITL CRYSTALLOGRAPHIC INSIGHTS INTO A MUTANT ARCHAEAL B-FAMILY JRNL TITL 2 POLYMERASE PROCESSING HNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 60416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0300 - 6.8000 0.99 3634 144 0.1655 0.2119 REMARK 3 2 6.7900 - 5.4000 1.00 3648 139 0.2063 0.1933 REMARK 3 3 5.3900 - 4.7100 1.00 3656 140 0.1683 0.1906 REMARK 3 4 4.7100 - 4.2800 1.00 3656 139 0.1699 0.2012 REMARK 3 5 4.2800 - 3.9800 1.00 3617 142 0.1820 0.1915 REMARK 3 6 3.9800 - 3.7400 1.00 3668 142 0.2142 0.2665 REMARK 3 7 3.7400 - 3.5600 0.99 3624 139 0.2638 0.3057 REMARK 3 8 3.5600 - 3.4000 1.00 3652 140 0.2442 0.2780 REMARK 3 9 3.4000 - 3.2700 0.99 3644 137 0.2712 0.3045 REMARK 3 10 3.2700 - 3.1600 0.99 3682 140 0.2986 0.3686 REMARK 3 11 3.1600 - 3.0600 1.00 3632 141 0.3264 0.3875 REMARK 3 12 3.0600 - 2.9700 0.99 3597 142 0.3473 0.3660 REMARK 3 13 2.9700 - 2.8900 0.99 3619 138 0.3540 0.3783 REMARK 3 14 2.8900 - 2.8200 0.99 3628 134 0.3735 0.3954 REMARK 3 15 2.8200 - 2.7600 1.00 3704 144 0.3946 0.4563 REMARK 3 16 2.7600 - 2.7000 0.97 3517 137 0.4086 0.3784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.466 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.587 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7027 REMARK 3 ANGLE : 0.504 9587 REMARK 3 CHIRALITY : 0.040 1030 REMARK 3 PLANARITY : 0.004 1130 REMARK 3 DIHEDRAL : 22.507 2749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.8453 21.0172 -18.2544 REMARK 3 T TENSOR REMARK 3 T11: 0.4451 T22: 0.5807 REMARK 3 T33: 0.5135 T12: 0.0508 REMARK 3 T13: 0.0050 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.1023 L22: 0.8233 REMARK 3 L33: 0.4490 L12: 0.0522 REMARK 3 L13: -0.0355 L23: 0.2533 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.1503 S13: -0.2107 REMARK 3 S21: 0.0284 S22: -0.0899 S23: 0.0914 REMARK 3 S31: 0.0899 S32: 0.0282 S33: 0.0779 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.570 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 4000, 20% V/V GLYCEROL REMARK 280 0.03 M DIETHYLENEGLYCOL, 0.03 M TRIETHYLENEGLYCOL, 0.03 M REMARK 280 TETRAETHYLENEGLYCOL, 0.03 M PENTAETHYLENEGLYCOL ETHYLENE GLYCOL, REMARK 280 0.1 M MES/IMIDAZOLE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.74050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.81200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.74050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.81200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 757 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 SER A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 THR A 774 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 3 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 6HT T 4 O3' - P - OP1 ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 115.09 -165.87 REMARK 500 LEU A 138 117.65 -160.25 REMARK 500 ASP A 164 -147.30 -151.37 REMARK 500 PHE A 214 -62.94 -138.74 REMARK 500 GLU A 393 99.81 -66.69 REMARK 500 ASN A 399 80.27 55.87 REMARK 500 SER A 407 79.19 56.03 REMARK 500 GLN A 436 -51.79 64.92 REMARK 500 ILE A 474 -70.34 -65.18 REMARK 500 TRP A 504 58.32 -100.12 REMARK 500 THR A 541 -64.06 66.58 REMARK 500 THR A 590 -166.31 -168.49 REMARK 500 GLN A 736 -61.71 -131.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 N REMARK 620 2 ALA A 368 O 122.4 REMARK 620 3 ASN A 370 OD1 86.4 90.1 REMARK 620 4 ARG A 503 NH2 123.7 111.5 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 251 OE1 REMARK 620 2 ASP A 343 OD1 136.2 REMARK 620 3 HOH A 907 O 81.5 90.1 REMARK 620 4 HOH A 927 O 91.0 104.1 165.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8S84 RELATED DB: PDB REMARK 900 KOD-H4, DNA:DNA, TERNARY, NON-HYDROLYZABLE TRIPHOSPHATE REMARK 900 RELATED ID: 8S8T RELATED DB: PDB REMARK 900 KOD-H4, DNA:DNA, BINARY, REMARK 900 RELATED ID: 8S87 RELATED DB: PDB REMARK 900 KOD-H4, APO STRUCTURE REMARK 900 RELATED ID: 9EMF RELATED DB: PDB REMARK 900 KOD-H4, BINARY, ONE HNA NUCLEOTIDE DBREF 9EMH A 1 774 UNP D0VWU9 D0VWU9_THEKO 1 774 DBREF 9EMH P 1 13 PDB 9EMH 9EMH 1 13 DBREF 9EMH T 1 16 PDB 9EMH 9EMH 1 16 SEQADV 9EMH GLN A 93 UNP D0VWU9 VAL 93 CONFLICT SEQADV 9EMH THR A 114 UNP D0VWU9 ILE 114 CONFLICT SEQADV 9EMH ALA A 141 UNP D0VWU9 ASP 141 CONFLICT SEQADV 9EMH ALA A 143 UNP D0VWU9 GLU 143 CONFLICT SEQADV 9EMH HIS A 147 UNP D0VWU9 GLU 147 CONFLICT SEQADV 9EMH LYS A 383 UNP D0VWU9 SER 383 CONFLICT SEQADV 9EMH GLY A 429 UNP D0VWU9 LYS 429 CONFLICT SEQADV 9EMH LEU A 445 UNP D0VWU9 PHE 445 CONFLICT SEQADV 9EMH LEU A 485 UNP D0VWU9 ALA 485 CONFLICT SEQADV 9EMH VAL A 493 UNP D0VWU9 TYR 493 CONFLICT SEQADV 9EMH HIS A 496 UNP D0VWU9 TYR 496 CONFLICT SEQADV 9EMH MET A 497 UNP D0VWU9 TYR 497 CONFLICT SEQADV 9EMH PHE A 499 UNP D0VWU9 TYR 499 CONFLICT SEQADV 9EMH GLU A 500 UNP D0VWU9 ALA 500 CONFLICT SEQADV 9EMH ASN A 501 UNP D0VWU9 ARG 501 CONFLICT SEQADV 9EMH LEU A 521 UNP D0VWU9 ILE 521 CONFLICT SEQADV 9EMH LYS A 584 UNP D0VWU9 GLU 584 CONFLICT SEQADV 9EMH LYS A 664 UNP D0VWU9 GLU 664 CONFLICT SEQADV 9EMH ARG A 726 UNP D0VWU9 LYS 726 CONFLICT SEQADV 9EMH LYS A 735 UNP D0VWU9 ASN 735 CONFLICT SEQRES 1 A 774 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 774 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 774 ASP GLN PRO ALA ILE ARG ASP LYS ILE ARG GLU HIS PRO SEQRES 9 A 774 ALA VAL ILE ASP ILE TYR GLU TYR ASP THR PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU VAL PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 774 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE THR THR ALA TRP SEQRES 24 A 774 GLU THR GLY GLU ASN LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU LYS GLU LEU SEQRES 30 A 774 ALA ARG ARG ARG GLN LYS TYR GLU GLY GLY TYR VAL LYS SEQRES 31 A 774 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 774 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 774 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLY SEQRES 34 A 774 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE CYS SEQRES 35 A 774 LYS ASP LEU PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 774 LEU LEU GLU GLU ARG GLN LYS ILE LYS LYS LYS MET LYS SEQRES 37 A 774 ALA THR ILE ASP PRO ILE GLU ARG LYS LEU LEU ASP TYR SEQRES 38 A 774 ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER VAL TYR SEQRES 39 A 774 GLY HIS MET GLY PHE GLU ASN ALA ARG TRP TYR CYS LYS SEQRES 40 A 774 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLU TYR SEQRES 41 A 774 LEU THR MET THR ILE LYS GLU ILE GLU GLU LYS TYR GLY SEQRES 42 A 774 PHE LYS VAL ILE TYR SER ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 774 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 774 ALA MET GLU PHE LEU LYS TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 774 GLY ALA LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 774 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 774 GLU GLU GLY LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 774 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 774 ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL GLU SEQRES 50 A 774 LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 774 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE HIS SEQRES 52 A 774 LYS GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 774 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 774 GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 774 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 774 PRO PHE ASP GLU PHE ASP PRO THR LYS HIS ARG TYR ASP SEQRES 57 A 774 ALA GLU TYR TYR ILE GLU LYS GLN VAL LEU PRO ALA VAL SEQRES 58 A 774 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 774 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER ALA SEQRES 60 A 774 TRP LEU LYS PRO LYS GLY THR SEQRES 1 P 13 DG DA DC DC DA DC DG DG DC DC DA DC DA SEQRES 1 T 16 DA DA DC 6HT 6HG DT DG DG DC DC DG DT DG SEQRES 2 T 16 DG DT DC HET 6HT T 4 21 HET 6HG T 5 23 HET IMD A 801 5 HET MG A 802 1 HET MG A 803 1 HET IMD A 804 5 HET IMD A 805 5 HET GOL A 806 6 HET IMD A 807 5 HETNAM 6HT 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(THYMIN-1-YL)-6'-O- HETNAM 2 6HT PHOSPHORYL-D-ARABINO-HEXITOL HETNAM 6HG 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(GUANIN-9-YL)-6'-O- HETNAM 2 6HG PHOSPHORYL-D-ARABINO-HEXITOL HETNAM IMD IMIDAZOLE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6HT C11 H17 N2 O8 P FORMUL 3 6HG C11 H16 N5 O7 P FORMUL 4 IMD 4(C3 H5 N2 1+) FORMUL 5 MG 2(MG 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 11 HOH *37(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 52 1 6 HELIX 3 AA3 HIS A 89 GLN A 91 5 3 HELIX 4 AA4 ASP A 92 GLU A 102 1 11 HELIX 5 AA5 PRO A 115 LYS A 124 1 10 HELIX 6 AA6 THR A 186 ASP A 202 1 17 HELIX 7 AA7 PHE A 214 GLY A 227 1 14 HELIX 8 AA8 LEU A 260 ILE A 268 1 9 HELIX 9 AA9 THR A 274 GLY A 284 1 11 HELIX 10 AB1 TYR A 291 GLY A 302 1 12 HELIX 11 AB2 ASN A 304 GLY A 338 1 35 HELIX 12 AB3 SER A 340 SER A 345 1 6 HELIX 13 AB4 SER A 348 ARG A 364 1 17 HELIX 14 AB5 ASP A 373 ARG A 380 1 8 HELIX 15 AB6 SER A 407 HIS A 416 1 10 HELIX 16 AB7 GLY A 447 THR A 470 1 24 HELIX 17 AB8 ASP A 472 GLY A 498 1 27 HELIX 18 AB9 CYS A 506 LYS A 531 1 26 HELIX 19 AC1 ASP A 552 LEU A 571 1 20 HELIX 20 AC2 LEU A 608 ARG A 612 5 5 HELIX 21 AC3 SER A 616 LYS A 632 1 17 HELIX 22 AC4 ASP A 635 LYS A 652 1 18 HELIX 23 AC5 PRO A 656 VAL A 661 5 6 HELIX 24 AC6 GLY A 677 GLY A 690 1 14 HELIX 25 AC7 ASP A 718 PHE A 720 5 3 HELIX 26 AC8 ASP A 728 LYS A 735 1 8 HELIX 27 AC9 GLN A 736 ARG A 746 1 11 HELIX 28 AD1 ALA A 747 GLY A 749 5 3 HELIX 29 AD2 ARG A 751 ARG A 756 5 6 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O PHE A 19 N LEU A 3 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O ASP A 31 N ILE A 16 SHEET 1 AA2 4 ARG A 67 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O LYS A 84 N GLU A 69 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N ALA A 40 O TRP A 83 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ILE A 107 N LEU A 41 SHEET 1 AA3 2 ALA A 56 ARG A 58 0 SHEET 2 AA3 2 THR A 61 VAL A 63 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ILE A 160 O ILE A 171 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 141 O SER A 161 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N PHE A 140 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 LYS A 535 SER A 539 0 SHEET 2 AA6 6 GLY A 543 THR A 547 -1 O PHE A 545 N TYR A 538 SHEET 3 AA6 6 GLY A 395 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 AA6 6 LEU A 577 THR A 590 -1 O LYS A 584 N ASN A 399 SHEET 5 AA6 6 LYS A 593 ASP A 598 -1 O ALA A 595 N PHE A 587 SHEET 6 AA6 6 ILE A 603 ARG A 606 -1 O THR A 604 N VAL A 596 SHEET 1 AA7 2 TYR A 431 VAL A 433 0 SHEET 2 AA7 2 ARG A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SHEET 1 AA8 3 ILE A 662 GLN A 665 0 SHEET 2 AA8 3 VAL A 698 VAL A 703 -1 O ILE A 699 N LYS A 664 SHEET 3 AA8 3 ALA A 714 PRO A 716 -1 O ILE A 715 N ILE A 702 SSBOND 1 CYS A 428 CYS A 442 1555 1555 2.03 SSBOND 2 CYS A 506 CYS A 509 1555 1555 2.03 LINK O3' DC T 3 P 6HT T 4 1555 1555 1.56 LINK O3' 6HT T 4 P 6HG T 5 1555 1555 1.56 LINK O3' 6HG T 5 P DT T 6 1555 1555 1.60 LINK N GLU A 111 MG MG A 803 1555 1555 2.62 LINK OE1 GLU A 251 MG MG A 802 1555 1555 2.83 LINK OD1 ASP A 343 MG MG A 802 1555 1555 2.87 LINK O ALA A 368 MG MG A 803 1555 1555 2.97 LINK OD1 ASN A 370 MG MG A 803 1555 1555 2.80 LINK NH2 ARG A 503 MG MG A 803 1555 1555 2.20 LINK MG MG A 802 O HOH A 907 1555 1555 2.43 LINK MG MG A 802 O HOH A 927 1555 1555 2.25 CRYST1 111.481 151.624 67.584 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014796 0.00000 CONECT 927 6806 CONECT 2069 6805 CONECT 2831 6805 CONECT 3038 6806 CONECT 3053 6806 CONECT 3539 3649 CONECT 3649 3539 CONECT 4148 6806 CONECT 4180 4204 CONECT 4204 4180 CONECT 6517 6528 CONECT 6528 6517 6529 6530 6531 CONECT 6529 6528 CONECT 6530 6528 CONECT 6531 6528 6532 CONECT 6532 6531 6533 CONECT 6533 6532 6534 6535 CONECT 6534 6533 6539 CONECT 6535 6533 6536 6537 CONECT 6536 6535 6549 CONECT 6537 6535 6538 CONECT 6538 6537 6539 6540 CONECT 6539 6534 6538 CONECT 6540 6538 6541 6548 CONECT 6541 6540 6542 6543 CONECT 6542 6541 CONECT 6543 6541 6544 CONECT 6544 6543 6545 6546 CONECT 6545 6544 CONECT 6546 6544 6547 6548 CONECT 6547 6546 CONECT 6548 6540 6546 CONECT 6549 6536 6550 6551 6552 CONECT 6550 6549 CONECT 6551 6549 CONECT 6552 6549 6553 CONECT 6553 6552 6554 CONECT 6554 6553 6555 6556 CONECT 6555 6554 6560 CONECT 6556 6554 6557 6558 CONECT 6557 6556 6572 CONECT 6558 6556 6559 CONECT 6559 6558 6560 6561 CONECT 6560 6555 6559 CONECT 6561 6559 6562 6571 CONECT 6562 6561 6563 CONECT 6563 6562 6564 CONECT 6564 6563 6565 6571 CONECT 6565 6564 6566 6567 CONECT 6566 6565 CONECT 6567 6565 6568 CONECT 6568 6567 6569 6570 CONECT 6569 6568 CONECT 6570 6568 6571 CONECT 6571 6561 6564 6570 CONECT 6572 6557 CONECT 6800 6801 6804 CONECT 6801 6800 6802 CONECT 6802 6801 6803 CONECT 6803 6802 6804 CONECT 6804 6800 6803 CONECT 6805 2069 2831 6834 6854 CONECT 6806 927 3038 3053 4148 CONECT 6807 6808 6811 CONECT 6808 6807 6809 CONECT 6809 6808 6810 CONECT 6810 6809 6811 CONECT 6811 6807 6810 CONECT 6812 6813 6816 CONECT 6813 6812 6814 CONECT 6814 6813 6815 CONECT 6815 6814 6816 CONECT 6816 6812 6815 CONECT 6817 6818 6819 CONECT 6818 6817 CONECT 6819 6817 6820 6821 CONECT 6820 6819 CONECT 6821 6819 6822 CONECT 6822 6821 CONECT 6823 6824 6827 CONECT 6824 6823 6825 CONECT 6825 6824 6826 CONECT 6826 6825 6827 CONECT 6827 6823 6826 CONECT 6834 6805 CONECT 6854 6805 MASTER 332 0 9 29 28 0 0 6 6855 3 86 63 END