HEADER VIRAL PROTEIN 08-MAR-24 9EML
TITLE SARS-COV-2 METHYLTRANSFERASE NSP10-16 IN COMPLEX WITH SAM AND M7GPPPA
TITLE 2 (CAP0-ANALOG)/M7GPPPAM (CAP1-ANALOG)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE NSP16;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 16,NSP16;
COMPND 5 EC: 2.1.1.57;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 10;
COMPND 9 CHAIN: B;
COMPND 10 SYNONYM: NSP10,GROWTH FACTOR-LIKE PEPTIDE,GFL;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS
SOURCE 3 2;
SOURCE 4 ORGANISM_TAXID: 2697049;
SOURCE 5 GENE: REP, 1A-1B;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS
SOURCE 10 2;
SOURCE 11 ORGANISM_TAXID: 2697049;
SOURCE 12 GENE: REP, 1A-1B;
SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS METHYLTRANSFERASE, COMPLEX, INHIBITOR, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR V.KREMLING,J.SPRENGER,D.OBERTHUER,A.KIENE
REVDAT 2 13-NOV-24 9EML 1 JRNL
REVDAT 1 20-MAR-24 9EML 0
JRNL AUTH V.KREMLING,S.FALKE,Y.FERNANDEZ-GARCIA,C.EHRT,A.KIENE,
JRNL AUTH 2 B.KLOPPROGGE,E.SCHEER,F.BARTHELS,P.MIDDENDORF,S.KUHN,
JRNL AUTH 3 S.GUNTHER,M.RAREY,H.N.CHAPMAN,D.OBERTHUR,J.SPRENGER
JRNL TITL SARS-COV-2 METHYLTRANSFERASE NSP10-16 IN COMPLEX WITH
JRNL TITL 2 NATURAL AND DRUG-LIKE PURINE ANALOGS FOR GUIDING
JRNL TITL 3 STRUCTURE-BASED DRUG DISCOVERY
JRNL REF ELIFE 2024
JRNL REFN ESSN 2050-084X
JRNL DOI 10.7554/ELIFE.98310.1
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.19.2_4158
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.07
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 33087
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.179
REMARK 3 R VALUE (WORKING SET) : 0.178
REMARK 3 FREE R VALUE : 0.240
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.590
REMARK 3 FREE R VALUE TEST SET COUNT : 527
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 49.0700 - 3.8100 1.00 8286 135 0.1498 0.2098
REMARK 3 2 3.8100 - 3.0200 1.00 8130 131 0.1656 0.2223
REMARK 3 3 3.0200 - 2.6400 1.00 8104 131 0.2289 0.2957
REMARK 3 4 2.6400 - 2.4000 1.00 8040 130 0.2829 0.3486
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.374
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.498
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 46.34
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.42
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.012 3561
REMARK 3 ANGLE : 1.296 4836
REMARK 3 CHIRALITY : 0.057 529
REMARK 3 PLANARITY : 0.010 595
REMARK 3 DIHEDRAL : 17.096 498
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 9EML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-24.
REMARK 100 THE DEPOSITION ID IS D_1292137087.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-OCT-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PETRA III, DESY
REMARK 200 BEAMLINE : P11
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.033220
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.20.1_4487
REMARK 200 DATA SCALING SOFTWARE : XDS 1.20.1_4487
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33107
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400
REMARK 200 RESOLUTION RANGE LOW (A) : 49.070
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 8.100
REMARK 200 R MERGE (I) : 0.31570
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6
REMARK 200 DATA REDUNDANCY IN SHELL : 6.90
REMARK 200 R MERGE FOR SHELL (I) : 2.63700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.660
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX 1.19.2-4158
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 71.53
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM SODIUM FLUORIDE, 100 MM 2-(N
REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID, PH 6.5, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.37667
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.75333
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.75333
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.37667
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19330 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 26.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 6799
REMARK 465 TYR A 7100
REMARK 465 PHE A 7101
REMARK 465 GLN A 7102
REMARK 465 GLY B 4253
REMARK 465 ALA B 4254
REMARK 465 GLY B 4255
REMARK 465 ASN B 4256
REMARK 465 ALA B 4257
REMARK 465 THR B 4258
REMARK 465 GLU B 4259
REMARK 465 VAL B 4260
REMARK 465 PRO B 4261
REMARK 465 ALA B 4262
REMARK 465 ASN B 4263
REMARK 465 SER B 4264
REMARK 465 THR B 4265
REMARK 465 VAL B 4266
REMARK 465 LEU B 4267
REMARK 465 SER B 4268
REMARK 465 PHE B 4269
REMARK 465 LEU B 4386
REMARK 465 ARG B 4387
REMARK 465 GLU B 4388
REMARK 465 PRO B 4389
REMARK 465 MET B 4390
REMARK 465 LEU B 4391
REMARK 465 GLN B 4392
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH TYR A 6828 O10 V9G A 7216 1.57
REMARK 500 NZ LYS A 6968 OE1 GLU A 7001 2.00
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 7400 O HOH A 7400 5555 1.90
REMARK 500 O HOH A 7447 O HOH A 7474 5555 2.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A6856 51.45 -99.90
REMARK 500 LYS A6939 -178.21 -178.81
REMARK 500 GLU A6945 -118.60 -113.84
REMARK 500 ASN A7008 92.91 66.21
REMARK 500 LEU A7052 99.90 -67.50
REMARK 500 ARG A7081 164.82 175.70
REMARK 500 ASP B4275 79.41 -105.98
REMARK 500 ASN B4315 -164.33 -101.34
REMARK 500 HIS B4333 44.07 70.53
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A7481 DISTANCE = 6.67 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B4401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B4327 SG
REMARK 620 2 CYS B4330 SG 113.2
REMARK 620 3 HIS B4336 NE2 101.1 116.3
REMARK 620 4 CYS B4343 SG 114.2 112.2 98.7
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B4402 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B4370 SG
REMARK 620 2 CYS B4373 SG 106.4
REMARK 620 3 CYS B4381 SG 110.9 109.4
REMARK 620 4 CYS B4383 SG 119.0 101.3 109.1
REMARK 620 N 1 2 3
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 8BSD RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH TUBERCIDIN
REMARK 900 RELATED ID: 8BZV RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH ADENOSINE
REMARK 900 RELATED ID: 8C5M RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH MTA
REMARK 900 RELATED ID: 8OT0 RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH MTA+GLY
REMARK 900 RELATED ID: 8OSX RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH ATP
REMARK 900 RELATED ID: 8OV1 RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH ADP
REMARK 900 RELATED ID: 8OTR RELATED DB: PDB
REMARK 900 CONTAINS THE SAME PROTEIN COMPLEX WITH SAM ANALOG BDH 33959089
DBREF 9EML A 6799 7096 UNP P0DTD1 R1AB_SARS2 6799 7096
DBREF 9EML B 4254 4392 UNP P0DTD1 R1AB_SARS2 4254 4392
SEQADV 9EML GLU A 7097 UNP P0DTD1 EXPRESSION TAG
SEQADV 9EML ASN A 7098 UNP P0DTD1 EXPRESSION TAG
SEQADV 9EML LEU A 7099 UNP P0DTD1 EXPRESSION TAG
SEQADV 9EML TYR A 7100 UNP P0DTD1 EXPRESSION TAG
SEQADV 9EML PHE A 7101 UNP P0DTD1 EXPRESSION TAG
SEQADV 9EML GLN A 7102 UNP P0DTD1 EXPRESSION TAG
SEQADV 9EML GLY B 4253 UNP P0DTD1 EXPRESSION TAG
SEQRES 1 A 304 SER SER GLN ALA TRP GLN PRO GLY VAL ALA MET PRO ASN
SEQRES 2 A 304 LEU TYR LYS MET GLN ARG MET LEU LEU GLU LYS CYS ASP
SEQRES 3 A 304 LEU GLN ASN TYR GLY ASP SER ALA THR LEU PRO LYS GLY
SEQRES 4 A 304 ILE MET MET ASN VAL ALA LYS TYR THR GLN LEU CYS GLN
SEQRES 5 A 304 TYR LEU ASN THR LEU THR LEU ALA VAL PRO TYR ASN MET
SEQRES 6 A 304 ARG VAL ILE HIS PHE GLY ALA GLY SER ASP LYS GLY VAL
SEQRES 7 A 304 ALA PRO GLY THR ALA VAL LEU ARG GLN TRP LEU PRO THR
SEQRES 8 A 304 GLY THR LEU LEU VAL ASP SER ASP LEU ASN ASP PHE VAL
SEQRES 9 A 304 SER ASP ALA ASP SER THR LEU ILE GLY ASP CYS ALA THR
SEQRES 10 A 304 VAL HIS THR ALA ASN LYS TRP ASP LEU ILE ILE SER ASP
SEQRES 11 A 304 MET TYR ASP PRO LYS THR LYS ASN VAL THR LYS GLU ASN
SEQRES 12 A 304 ASP SER LYS GLU GLY PHE PHE THR TYR ILE CYS GLY PHE
SEQRES 13 A 304 ILE GLN GLN LYS LEU ALA LEU GLY GLY SER VAL ALA ILE
SEQRES 14 A 304 LYS ILE THR GLU HIS SER TRP ASN ALA ASP LEU TYR LYS
SEQRES 15 A 304 LEU MET GLY HIS PHE ALA TRP TRP THR ALA PHE VAL THR
SEQRES 16 A 304 ASN VAL ASN ALA SER SER SER GLU ALA PHE LEU ILE GLY
SEQRES 17 A 304 CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN ILE ASP GLY
SEQRES 18 A 304 TYR VAL MET HIS ALA ASN TYR ILE PHE TRP ARG ASN THR
SEQRES 19 A 304 ASN PRO ILE GLN LEU SER SER TYR SER LEU PHE ASP MET
SEQRES 20 A 304 SER LYS PHE PRO LEU LYS LEU ARG GLY THR ALA VAL MET
SEQRES 21 A 304 SER LEU LYS GLU GLY GLN ILE ASN ASP MET ILE LEU SER
SEQRES 22 A 304 LEU LEU SER LYS GLY ARG LEU ILE ILE ARG GLU ASN ASN
SEQRES 23 A 304 ARG VAL VAL ILE SER SER ASP VAL LEU VAL ASN ASN GLU
SEQRES 24 A 304 ASN LEU TYR PHE GLN
SEQRES 1 B 140 GLY ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SER THR
SEQRES 2 B 140 VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA ALA LYS
SEQRES 3 B 140 ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN PRO ILE
SEQRES 4 B 140 THR ASN CYS VAL LYS MET LEU CYS THR HIS THR GLY THR
SEQRES 5 B 140 GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN MET ASP
SEQRES 6 B 140 GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU TYR CYS
SEQRES 7 B 140 ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY PHE CYS
SEQRES 8 B 140 ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR THR CYS
SEQRES 9 B 140 ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN THR VAL
SEQRES 10 B 140 CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY CYS SER
SEQRES 11 B 140 CYS ASP GLN LEU ARG GLU PRO MET LEU GLN
HET GTA A7201 78
HET EDO A7202 10
HET SAM A7203 49
HET MES A7204 25
HET EDO A7205 10
HET EDO A7206 10
HET EDO A7207 10
HET EDO A7208 10
HET EDO A7209 10
HET EDO A7210 10
HET EDO A7211 10
HET EDO A7212 10
HET EDT A7213 32
HET EDO A7214 10
HET EDO A7215 10
HET V9G A7216 81
HET ZN B4401 1
HET ZN B4402 1
HET EDO B4403 10
HET EDO B4404 10
HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM SAM S-ADENOSYLMETHIONINE
HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
HETNAM EDT {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-
HETNAM 2 EDT AMINO}-ACETIC ACID
HETNAM V9G 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-
HETNAM 2 V9G ADENOSINE
HETNAM ZN ZINC ION
HETSYN GTA 7-METHYL-GPPPA
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 GTA C21 H30 N10 O17 P3 1+
FORMUL 4 EDO 13(C2 H6 O2)
FORMUL 5 SAM C15 H22 N6 O5 S
FORMUL 6 MES C6 H13 N O4 S
FORMUL 15 EDT C10 H16 N2 O8
FORMUL 18 V9G C22 H32 N10 O17 P3
FORMUL 19 ZN 2(ZN 2+)
FORMUL 23 HOH *235(H2 O)
HELIX 1 AA1 SER A 6800 GLN A 6804 5 5
HELIX 2 AA2 PRO A 6810 MET A 6815 1 6
HELIX 3 AA3 MET A 6839 ASN A 6853 1 15
HELIX 4 AA4 ALA A 6877 LEU A 6887 1 11
HELIX 5 AA5 ASP A 6912 ALA A 6914 5 3
HELIX 6 AA6 ASP A 6931 ASN A 6936 5 6
HELIX 7 AA7 GLY A 6946 LYS A 6958 1 13
HELIX 8 AA8 ASN A 6975 GLY A 6983 1 9
HELIX 9 AA9 VAL A 6995 ALA A 6997 5 3
HELIX 10 AB1 ASP A 7018 ASN A 7033 1 16
HELIX 11 AB2 SER A 7039 ASP A 7044 5 6
HELIX 12 AB3 LYS A 7061 ILE A 7065 5 5
HELIX 13 AB4 ASN A 7066 LYS A 7075 1 10
HELIX 14 AB5 ASP B 4275 SER B 4286 1 12
HELIX 15 AB6 GLY B 4323 CYS B 4327 1 5
HELIX 16 AB7 CYS B 4327 HIS B 4333 1 7
HELIX 17 AB8 THR B 4355 ALA B 4357 5 3
HELIX 18 AB9 ASP B 4359 ASN B 4367 1 9
SHEET 1 AA1 8 GLY A6806 ALA A6808 0
SHEET 2 AA1 8 PHE A6985 THR A6993 -1 O VAL A6992 N VAL A6807
SHEET 3 AA1 8 ALA A7002 TYR A7009 -1 O CYS A7007 N TRP A6987
SHEET 4 AA1 8 LEU A6959 ILE A6969 -1 N ILE A6969 O ALA A7002
SHEET 5 AA1 8 TRP A6922 SER A6927 1 N SER A6927 O LYS A6968
SHEET 6 AA1 8 ARG A6864 PHE A6868 1 N PHE A6868 O ILE A6926
SHEET 7 AA1 8 LEU A6892 ASP A6897 1 O LEU A6892 N VAL A6865
SHEET 8 AA1 8 SER A6907 ILE A6910 1 O LEU A6909 N ASP A6895
SHEET 1 AA2 2 VAL A6916 THR A6918 0
SHEET 2 AA2 2 ILE A7088 SER A7090 -1 O SER A7089 N HIS A6917
SHEET 1 AA3 2 ALA A7056 MET A7058 0
SHEET 2 AA3 2 LEU A7078 ILE A7080 1 O ILE A7079 N ALA A7056
SHEET 1 AA4 3 ILE B4308 THR B4309 0
SHEET 2 AA4 3 TYR B4349 PRO B4353 -1 O TYR B4349 N THR B4309
SHEET 3 AA4 3 GLN B4318 GLY B4322 -1 N GLU B4319 O ILE B4352
LINK SG CYS B4327 ZN ZN B4401 1555 1555 2.30
LINK SG CYS B4330 ZN ZN B4401 1555 1555 2.31
LINK NE2 HIS B4336 ZN ZN B4401 1555 1555 2.04
LINK SG CYS B4343 ZN ZN B4401 1555 1555 2.32
LINK SG CYS B4370 ZN ZN B4402 1555 1555 2.28
LINK SG CYS B4373 ZN ZN B4402 1555 1555 2.36
LINK SG CYS B4381 ZN ZN B4402 1555 1555 2.35
LINK SG CYS B4383 ZN ZN B4402 1555 1555 2.34
CRYST1 167.740 167.740 52.130 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005962 0.003442 0.000000 0.00000
SCALE2 0.000000 0.006884 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019183 0.00000