HEADER OXIDOREDUCTASE 12-MAR-24 9END TITLE CRYSTAL STRUCTURE OF METHANOPYRUS KANDLERI MALATE DEHYDROGENASE MUTANT TITLE 2 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOPYRUS KANDLERI; SOURCE 3 ORGANISM_TAXID: 2320; SOURCE 4 GENE: HA336_00525; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MALATE DEHYDROGENASE, ROSSMANN-LIKE MOTIF, NAD(P)H BINDING SITE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.COQUILLE,J.ROCHE,E.GIRARD,D.MADERN REVDAT 1 10-JUL-24 9END 0 JRNL AUTH S.COQUILLE,C.SIMOES PEREIRA,C.BROCHIER-ARMANET,J.ROCHE, JRNL AUTH 2 G.SANTONI,N.COQUELLE,E.GIRARD,F.STERPONE,D.MADERN JRNL TITL NAVIGATING THE CONFORMATIONAL LANDSCAPE OF AN ENZYME. JRNL TITL 2 STABILIZATION OF A LOW POPULATED CONFORMER BY EVOLUTIONARY JRNL TITL 3 MUTATIONS TRIGGERS ALLOSTERY INTO A NON-ALLOSTERIC ENZYME. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 58739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7800 - 5.3500 0.99 2916 154 0.2289 0.2472 REMARK 3 2 5.3400 - 4.2600 1.00 2770 146 0.1571 0.1843 REMARK 3 3 4.2600 - 3.7200 1.00 2709 143 0.1569 0.2055 REMARK 3 4 3.7200 - 3.3800 1.00 2699 142 0.1822 0.1944 REMARK 3 5 3.3800 - 3.1400 0.99 2646 139 0.1936 0.2400 REMARK 3 6 3.1400 - 2.9600 0.99 2637 139 0.2079 0.2717 REMARK 3 7 2.9600 - 2.8100 1.00 2664 140 0.2133 0.2645 REMARK 3 8 2.8100 - 2.6900 1.00 2667 140 0.2024 0.2706 REMARK 3 9 2.6900 - 2.5900 1.00 2638 139 0.1974 0.2227 REMARK 3 10 2.5900 - 2.5000 1.00 2638 139 0.2004 0.2242 REMARK 3 11 2.5000 - 2.4200 1.00 2620 138 0.1921 0.2152 REMARK 3 12 2.4200 - 2.3500 1.00 2636 139 0.1878 0.2435 REMARK 3 13 2.3500 - 2.2900 1.00 2641 138 0.1926 0.2487 REMARK 3 14 2.2900 - 2.2300 1.00 2614 138 0.1931 0.2043 REMARK 3 15 2.2300 - 2.1800 1.00 2619 138 0.2138 0.2548 REMARK 3 16 2.1800 - 2.1300 1.00 2618 138 0.2196 0.2646 REMARK 3 17 2.1300 - 2.0900 1.00 2624 138 0.2412 0.2699 REMARK 3 18 2.0900 - 2.0500 1.00 2617 138 0.2394 0.2636 REMARK 3 19 2.0500 - 2.0200 1.00 2616 137 0.2592 0.3073 REMARK 3 20 2.0200 - 1.9800 1.00 2587 136 0.2715 0.3104 REMARK 3 21 1.9800 - 1.9500 1.00 2625 139 0.2927 0.3340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.812 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4721 REMARK 3 ANGLE : 1.048 6426 REMARK 3 CHIRALITY : 0.053 789 REMARK 3 PLANARITY : 0.009 819 REMARK 3 DIHEDRAL : 14.852 1729 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4954 -11.9811 43.6979 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.3055 REMARK 3 T33: 0.2761 T12: 0.0492 REMARK 3 T13: 0.0092 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.9693 L22: 3.4814 REMARK 3 L33: 2.3093 L12: -0.0524 REMARK 3 L13: 1.1120 L23: -0.3868 REMARK 3 S TENSOR REMARK 3 S11: -0.1375 S12: -0.0959 S13: 0.0173 REMARK 3 S21: 0.0030 S22: 0.2269 S23: 0.2447 REMARK 3 S31: -0.1903 S32: -0.2143 S33: -0.0495 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3746 1.6527 28.6872 REMARK 3 T TENSOR REMARK 3 T11: 0.8792 T22: 0.4239 REMARK 3 T33: 0.4031 T12: -0.0178 REMARK 3 T13: -0.0186 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 6.1305 L22: 4.0983 REMARK 3 L33: 5.5394 L12: 0.7180 REMARK 3 L13: -3.3818 L23: -0.4960 REMARK 3 S TENSOR REMARK 3 S11: -0.3024 S12: 0.7088 S13: 0.1962 REMARK 3 S21: -1.3642 S22: 0.0351 S23: -0.1586 REMARK 3 S31: -0.1454 S32: -0.4481 S33: 0.1995 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3342 6.0008 41.1516 REMARK 3 T TENSOR REMARK 3 T11: 0.7133 T22: 0.2810 REMARK 3 T33: 0.4210 T12: 0.1225 REMARK 3 T13: -0.0852 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.2379 L22: 2.6864 REMARK 3 L33: 2.1133 L12: 0.6247 REMARK 3 L13: -0.7861 L23: -0.2363 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.1010 S13: 0.2871 REMARK 3 S21: -0.0619 S22: 0.0403 S23: 0.1722 REMARK 3 S31: -0.3830 S32: -0.3187 S33: 0.1686 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8774 -3.7311 45.4295 REMARK 3 T TENSOR REMARK 3 T11: 0.5647 T22: 0.3866 REMARK 3 T33: 0.5818 T12: -0.0326 REMARK 3 T13: 0.1148 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.5731 L22: 2.4484 REMARK 3 L33: 2.2702 L12: 0.6392 REMARK 3 L13: 0.3193 L23: -1.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.2284 S13: 0.0519 REMARK 3 S21: -0.6274 S22: -0.1040 S23: -0.6516 REMARK 3 S31: -0.0766 S32: 0.6276 S33: 0.1587 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2352 4.3015 48.5282 REMARK 3 T TENSOR REMARK 3 T11: 0.6701 T22: 0.2916 REMARK 3 T33: 0.4393 T12: 0.0422 REMARK 3 T13: -0.1047 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 1.4812 L22: 2.6139 REMARK 3 L33: 1.5441 L12: 0.5855 REMARK 3 L13: 0.1124 L23: -0.9172 REMARK 3 S TENSOR REMARK 3 S11: -0.1761 S12: -0.1780 S13: 0.3778 REMARK 3 S21: 0.2698 S22: 0.0891 S23: -0.4368 REMARK 3 S31: -0.4830 S32: 0.1151 S33: 0.0477 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8626 12.4758 33.9513 REMARK 3 T TENSOR REMARK 3 T11: 1.1656 T22: 0.3440 REMARK 3 T33: 0.7198 T12: -0.0055 REMARK 3 T13: 0.0685 T23: 0.1206 REMARK 3 L TENSOR REMARK 3 L11: 4.9059 L22: 2.7055 REMARK 3 L33: 3.1276 L12: -0.2108 REMARK 3 L13: 1.5260 L23: 0.8066 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 1.0106 S13: 0.7205 REMARK 3 S21: -1.2989 S22: -0.2404 S23: -0.7742 REMARK 3 S31: -0.5874 S32: 0.4964 S33: 0.1580 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2114 -32.4775 44.8389 REMARK 3 T TENSOR REMARK 3 T11: 0.4274 T22: 0.2368 REMARK 3 T33: 0.3017 T12: 0.0259 REMARK 3 T13: 0.0101 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.6892 L22: 3.6178 REMARK 3 L33: 1.7343 L12: 0.2128 REMARK 3 L13: -0.0576 L23: -0.2485 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.0932 S13: -0.1240 REMARK 3 S21: -0.2943 S22: 0.0337 S23: -0.1616 REMARK 3 S31: 0.2865 S32: 0.0696 S33: -0.0538 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5088 -32.3150 53.6233 REMARK 3 T TENSOR REMARK 3 T11: 0.5904 T22: 0.5645 REMARK 3 T33: 0.8532 T12: 0.0072 REMARK 3 T13: 0.0181 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 2.1562 L22: 2.7875 REMARK 3 L33: 1.3140 L12: -0.1919 REMARK 3 L13: 0.0677 L23: -0.4642 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: -0.1645 S13: 0.6537 REMARK 3 S21: -0.0841 S22: 0.1144 S23: 0.4946 REMARK 3 S31: -0.5756 S32: -0.5145 S33: -0.1491 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0628 -37.9907 56.9994 REMARK 3 T TENSOR REMARK 3 T11: 0.4937 T22: 0.2895 REMARK 3 T33: 0.3793 T12: -0.0535 REMARK 3 T13: -0.0036 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.4614 L22: 2.1273 REMARK 3 L33: 1.4540 L12: 0.2264 REMARK 3 L13: 0.1496 L23: 1.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.1889 S13: -0.2775 REMARK 3 S21: 0.2065 S22: -0.0414 S23: 0.1645 REMARK 3 S31: 0.4289 S32: -0.1592 S33: -0.0324 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 290 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6287 -51.3044 47.5922 REMARK 3 T TENSOR REMARK 3 T11: 0.7564 T22: 0.3235 REMARK 3 T33: 0.6462 T12: -0.1907 REMARK 3 T13: -0.0875 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 4.6809 L22: 2.5998 REMARK 3 L33: 5.0193 L12: -1.1069 REMARK 3 L13: -2.6722 L23: 0.6131 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: 0.6567 S13: -0.8797 REMARK 3 S21: -0.4702 S22: 0.0129 S23: 0.4043 REMARK 3 S31: 1.2571 S32: -0.7784 S33: 0.1607 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9END COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.750 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.18 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CITRATE TRIBASIC REMARK 280 MONOHYDRATE, 24% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.75500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.41000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.63250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.41000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.87750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.41000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 188.63250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.41000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.87750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 569 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 84 REMARK 465 GLN A 85 REMARK 465 LYS A 86 REMARK 465 PRO A 87 REMARK 465 GLY A 88 REMARK 465 GLN A 89 REMARK 465 SER A 315 REMARK 465 GLU A 316 REMARK 465 ARG A 317 REMARK 465 MET B 1 REMARK 465 PRO B 84 REMARK 465 GLN B 85 REMARK 465 LYS B 86 REMARK 465 PRO B 87 REMARK 465 GLY B 88 REMARK 465 GLN B 89 REMARK 465 THR B 197 REMARK 465 ARG B 198 REMARK 465 MET B 199 REMARK 465 PRO B 200 REMARK 465 GLY B 201 REMARK 465 TRP B 202 REMARK 465 GLU B 203 REMARK 465 ASP B 204 REMARK 465 PHE B 205 REMARK 465 GLY B 227 REMARK 465 THR B 228 REMARK 465 GLU B 316 REMARK 465 ARG B 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 VAL B 165 CG1 CG2 REMARK 470 THR B 189 OG1 CG2 REMARK 470 ILE B 194 CG1 CG2 CD1 REMARK 470 VAL B 196 CG1 CG2 REMARK 470 VAL B 207 CG1 CG2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 221 CG1 CG2 CD1 REMARK 470 ILE B 222 CG1 CG2 CD1 REMARK 470 GLU B 223 CG CD OE1 OE2 REMARK 470 ILE B 286 CG1 CG2 CD1 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 151 HD1 HIS B 178 1.54 REMARK 500 O HOH A 577 O HOH A 593 1.87 REMARK 500 O HOH B 524 O HOH B 626 1.87 REMARK 500 O HOH B 556 O HOH B 572 1.90 REMARK 500 O HOH A 592 O HOH A 599 1.99 REMARK 500 O HOH B 633 O HOH B 646 2.03 REMARK 500 O HOH B 588 O HOH B 600 2.07 REMARK 500 O HOH A 586 O HOH A 599 2.08 REMARK 500 O HOH B 528 O HOH B 639 2.08 REMARK 500 O HOH B 630 O HOH B 636 2.10 REMARK 500 O HOH B 533 O HOH B 639 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 66 -0.92 -148.47 REMARK 500 THR A 224 -69.21 -106.76 REMARK 500 GLN A 229 -70.09 -143.91 REMARK 500 GLU A 282 143.46 -171.31 REMARK 500 SER B 188 51.51 -114.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 22 O REMARK 620 2 LEU A 24 O 88.7 REMARK 620 3 VAL A 27 O 107.6 77.6 REMARK 620 4 ASP A 59 O 100.2 165.6 109.9 REMARK 620 5 HOH A 529 O 88.3 72.6 145.8 96.2 REMARK 620 6 HOH A 552 O 174.3 88.1 76.3 82.0 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 22 O REMARK 620 2 LEU B 24 O 93.5 REMARK 620 3 VAL B 27 O 109.7 81.8 REMARK 620 4 ASP B 59 O 95.7 162.0 109.3 REMARK 620 5 HOH B 602 O 172.4 88.0 77.9 81.0 REMARK 620 6 HOH B 622 O 96.2 82.6 150.4 81.1 76.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8RS5 RELATED DB: PDB REMARK 900 MK MALDH MUTANT 4 REMARK 900 RELATED ID: 8RWL RELATED DB: PDB REMARK 900 MK MALDH MUTANT 1 DBREF1 9END A 1 317 UNP A0A832T926_9EURY DBREF2 9END A A0A832T926 1 317 DBREF1 9END B 1 317 UNP A0A832T926_9EURY DBREF2 9END B A0A832T926 1 317 SEQADV 9END HIS A 51 UNP A0A832T92 ASP 51 ENGINEERED MUTATION SEQADV 9END GLN A 85 UNP A0A832T92 ARG 85 ENGINEERED MUTATION SEQADV 9END ARG A 156 UNP A0A832T92 LYS 156 ENGINEERED MUTATION SEQADV 9END THR A 228 UNP A0A832T92 SER 228 ENGINEERED MUTATION SEQADV 9END ILE A 232 UNP A0A832T92 PRO 232 ENGINEERED MUTATION SEQADV 9END HIS B 51 UNP A0A832T92 ASP 51 ENGINEERED MUTATION SEQADV 9END GLN B 85 UNP A0A832T92 ARG 85 ENGINEERED MUTATION SEQADV 9END ARG B 156 UNP A0A832T92 LYS 156 ENGINEERED MUTATION SEQADV 9END THR B 228 UNP A0A832T92 SER 228 ENGINEERED MUTATION SEQADV 9END ILE B 232 UNP A0A832T92 PRO 232 ENGINEERED MUTATION SEQRES 1 A 317 MET SER LYS VAL ALA VAL ILE GLY ALA THR GLY ARG VAL SEQRES 2 A 317 GLY SER THR ALA ALA ALA ARG LEU ALA LEU LEU ASP CYS SEQRES 3 A 317 VAL ASN GLU VAL THR LEU ILE ALA ARG PRO LYS SER VAL SEQRES 4 A 317 ASP LYS LEU ARG GLY LEU ARG ARG ASP ILE LEU HIS SER SEQRES 5 A 317 LEU ALA ALA ALA GLN LYS ASP ALA GLU ILE THR ILE GLY SEQRES 6 A 317 CYS GLU ARG ASP ASP TYR VAL ASP ALA ASP VAL ILE VAL SEQRES 7 A 317 MET THR ALA GLY ILE PRO GLN LYS PRO GLY GLN THR ARG SEQRES 8 A 317 LEU ASP LEU THR LYS ASP ASN ALA ALA ILE ILE LYS LYS SEQRES 9 A 317 TYR LEU GLU GLY VAL ALA GLU GLU ASN PRO GLU ALA ILE SEQRES 10 A 317 VAL LEU VAL VAL THR ASN PRO VAL ASP VAL LEU THR TYR SEQRES 11 A 317 VAL ALA LEU LYS VAL SER GLY LEU PRO LYS ASN ARG VAL SEQRES 12 A 317 ILE GLY LEU GLY THR HIS LEU ASP SER MET ARG PHE ARG SEQRES 13 A 317 VAL LEU ILE ALA LYS HIS PHE ASN VAL HIS MET SER GLU SEQRES 14 A 317 VAL HIS THR ARG ILE ILE GLY GLU HIS GLY ASP THR MET SEQRES 15 A 317 VAL PRO VAL ILE SER SER THR SER VAL GLY GLY ILE PRO SEQRES 16 A 317 VAL THR ARG MET PRO GLY TRP GLU ASP PHE ASP VAL GLU SEQRES 17 A 317 GLU ALA VAL ARG GLU VAL LYS GLU ALA GLY GLN ARG ILE SEQRES 18 A 317 ILE GLU THR TRP GLY GLY THR GLN PHE GLY ILE ALA GLN SEQRES 19 A 317 ALA ILE THR ASN LEU VAL ARG THR ILE LEU GLN ASP GLU SEQRES 20 A 317 ARG ARG VAL LEU THR VAL SER ALA TYR LEU ASP GLY GLU SEQRES 21 A 317 ILE ASP GLY ILE ARG ASP VAL CYS ILE GLY VAL PRO ALA SEQRES 22 A 317 ARG LEU GLY ARG GLU GLY VAL LEU GLU ILE VAL PRO ILE SEQRES 23 A 317 GLU LEU GLU GLU ASP GLU MET ARG ALA PHE ARG ARG SER SEQRES 24 A 317 VAL LYS VAL VAL LYS GLU ALA THR ARG GLU ALA MET GLU SEQRES 25 A 317 ALA ILE SER GLU ARG SEQRES 1 B 317 MET SER LYS VAL ALA VAL ILE GLY ALA THR GLY ARG VAL SEQRES 2 B 317 GLY SER THR ALA ALA ALA ARG LEU ALA LEU LEU ASP CYS SEQRES 3 B 317 VAL ASN GLU VAL THR LEU ILE ALA ARG PRO LYS SER VAL SEQRES 4 B 317 ASP LYS LEU ARG GLY LEU ARG ARG ASP ILE LEU HIS SER SEQRES 5 B 317 LEU ALA ALA ALA GLN LYS ASP ALA GLU ILE THR ILE GLY SEQRES 6 B 317 CYS GLU ARG ASP ASP TYR VAL ASP ALA ASP VAL ILE VAL SEQRES 7 B 317 MET THR ALA GLY ILE PRO GLN LYS PRO GLY GLN THR ARG SEQRES 8 B 317 LEU ASP LEU THR LYS ASP ASN ALA ALA ILE ILE LYS LYS SEQRES 9 B 317 TYR LEU GLU GLY VAL ALA GLU GLU ASN PRO GLU ALA ILE SEQRES 10 B 317 VAL LEU VAL VAL THR ASN PRO VAL ASP VAL LEU THR TYR SEQRES 11 B 317 VAL ALA LEU LYS VAL SER GLY LEU PRO LYS ASN ARG VAL SEQRES 12 B 317 ILE GLY LEU GLY THR HIS LEU ASP SER MET ARG PHE ARG SEQRES 13 B 317 VAL LEU ILE ALA LYS HIS PHE ASN VAL HIS MET SER GLU SEQRES 14 B 317 VAL HIS THR ARG ILE ILE GLY GLU HIS GLY ASP THR MET SEQRES 15 B 317 VAL PRO VAL ILE SER SER THR SER VAL GLY GLY ILE PRO SEQRES 16 B 317 VAL THR ARG MET PRO GLY TRP GLU ASP PHE ASP VAL GLU SEQRES 17 B 317 GLU ALA VAL ARG GLU VAL LYS GLU ALA GLY GLN ARG ILE SEQRES 18 B 317 ILE GLU THR TRP GLY GLY THR GLN PHE GLY ILE ALA GLN SEQRES 19 B 317 ALA ILE THR ASN LEU VAL ARG THR ILE LEU GLN ASP GLU SEQRES 20 B 317 ARG ARG VAL LEU THR VAL SER ALA TYR LEU ASP GLY GLU SEQRES 21 B 317 ILE ASP GLY ILE ARG ASP VAL CYS ILE GLY VAL PRO ALA SEQRES 22 B 317 ARG LEU GLY ARG GLU GLY VAL LEU GLU ILE VAL PRO ILE SEQRES 23 B 317 GLU LEU GLU GLU ASP GLU MET ARG ALA PHE ARG ARG SER SEQRES 24 B 317 VAL LYS VAL VAL LYS GLU ALA THR ARG GLU ALA MET GLU SEQRES 25 B 317 ALA ILE SER GLU ARG HET NDP A 401 74 HET CL A 402 1 HET NA A 403 1 HET NDP B 401 74 HET NA B 402 1 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 CL CL 1- FORMUL 5 NA 2(NA 1+) FORMUL 8 HOH *256(H2 O) HELIX 1 AA1 GLY A 11 LEU A 23 1 13 HELIX 2 AA2 ARG A 35 LYS A 37 5 3 HELIX 3 AA3 SER A 38 GLN A 57 1 20 HELIX 4 AA4 GLU A 67 VAL A 72 1 6 HELIX 5 AA5 ARG A 91 GLU A 107 1 17 HELIX 6 AA6 GLY A 108 ASN A 113 1 6 HELIX 7 AA7 PRO A 124 GLY A 137 1 14 HELIX 8 AA8 PRO A 139 ASN A 141 5 3 HELIX 9 AA9 THR A 148 ASN A 164 1 17 HELIX 10 AB1 HIS A 166 SER A 168 5 3 HELIX 11 AB2 ILE A 186 SER A 188 5 3 HELIX 12 AB3 THR A 197 MET A 199 5 3 HELIX 13 AB4 GLY A 201 PHE A 205 5 5 HELIX 14 AB5 ASP A 206 TRP A 225 1 20 HELIX 15 AB6 GLN A 229 GLN A 245 1 17 HELIX 16 AB7 GLU A 289 ILE A 314 1 26 HELIX 17 AB8 GLY B 11 LEU B 23 1 13 HELIX 18 AB9 ARG B 35 LYS B 37 5 3 HELIX 19 AC1 SER B 38 ALA B 56 1 19 HELIX 20 AC2 GLU B 67 TYR B 71 5 5 HELIX 21 AC3 ARG B 91 GLU B 107 1 17 HELIX 22 AC4 GLY B 108 ASN B 113 1 6 HELIX 23 AC5 PRO B 124 GLY B 137 1 14 HELIX 24 AC6 PRO B 139 ASN B 141 5 3 HELIX 25 AC7 GLY B 147 PHE B 163 1 17 HELIX 26 AC8 HIS B 166 SER B 168 5 3 HELIX 27 AC9 ILE B 186 SER B 188 5 3 HELIX 28 AD1 VAL B 207 TRP B 225 1 19 HELIX 29 AD2 PHE B 230 GLN B 245 1 16 HELIX 30 AD3 GLU B 289 SER B 315 1 27 SHEET 1 AA1 6 GLU A 61 GLY A 65 0 SHEET 2 AA1 6 GLU A 29 ILE A 33 1 N LEU A 32 O THR A 63 SHEET 3 AA1 6 LYS A 3 ILE A 7 1 N VAL A 6 O THR A 31 SHEET 4 AA1 6 VAL A 76 MET A 79 1 O VAL A 78 N ALA A 5 SHEET 5 AA1 6 ILE A 117 VAL A 120 1 O ILE A 117 N ILE A 77 SHEET 6 AA1 6 VAL A 143 GLY A 145 1 O ILE A 144 N VAL A 120 SHEET 1 AA2 3 VAL A 170 HIS A 171 0 SHEET 2 AA2 3 SER A 190 VAL A 191 -1 O SER A 190 N HIS A 171 SHEET 3 AA2 3 ILE A 194 PRO A 195 -1 O ILE A 194 N VAL A 191 SHEET 1 AA3 2 ILE A 174 ILE A 175 0 SHEET 2 AA3 2 VAL A 183 PRO A 184 -1 O VAL A 183 N ILE A 175 SHEET 1 AA4 3 ARG A 249 ASP A 258 0 SHEET 2 AA4 3 ARG A 265 GLY A 276 -1 O VAL A 267 N LEU A 257 SHEET 3 AA4 3 GLY A 279 ILE A 283 -1 O LEU A 281 N ARG A 274 SHEET 1 AA5 6 GLU B 61 GLY B 65 0 SHEET 2 AA5 6 GLU B 29 ILE B 33 1 N LEU B 32 O THR B 63 SHEET 3 AA5 6 LYS B 3 ILE B 7 1 N VAL B 6 O THR B 31 SHEET 4 AA5 6 VAL B 76 MET B 79 1 O VAL B 78 N ALA B 5 SHEET 5 AA5 6 ILE B 117 VAL B 120 1 O LEU B 119 N ILE B 77 SHEET 6 AA5 6 VAL B 143 GLY B 145 1 O ILE B 144 N VAL B 120 SHEET 1 AA6 3 VAL B 170 HIS B 171 0 SHEET 2 AA6 3 SER B 190 VAL B 191 -1 O SER B 190 N HIS B 171 SHEET 3 AA6 3 ILE B 194 PRO B 195 -1 O ILE B 194 N VAL B 191 SHEET 1 AA7 2 ILE B 174 ILE B 175 0 SHEET 2 AA7 2 VAL B 183 PRO B 184 -1 O VAL B 183 N ILE B 175 SHEET 1 AA8 3 ARG B 249 ASP B 258 0 SHEET 2 AA8 3 ARG B 265 GLY B 276 -1 O VAL B 267 N LEU B 257 SHEET 3 AA8 3 GLY B 279 ILE B 283 -1 O LEU B 281 N ARG B 274 LINK O ALA A 22 NA NA A 403 1555 1555 2.70 LINK O LEU A 24 NA NA A 403 1555 1555 2.54 LINK O VAL A 27 NA NA A 403 1555 1555 2.67 LINK O ASP A 59 NA NA A 403 1555 1555 2.57 LINK NA NA A 403 O HOH A 529 1555 1555 2.92 LINK NA NA A 403 O HOH A 552 1555 1555 2.86 LINK O ALA B 22 NA NA B 402 1555 1555 2.77 LINK O LEU B 24 NA NA B 402 1555 1555 2.63 LINK O VAL B 27 NA NA B 402 1555 1555 2.60 LINK O ASP B 59 NA NA B 402 1555 1555 2.64 LINK NA NA B 402 O HOH B 602 1555 1555 3.00 LINK NA NA B 402 O HOH B 622 1555 1555 2.72 CISPEP 1 ASN A 123 PRO A 124 0 -2.07 CISPEP 2 ASN B 123 PRO B 124 0 -3.84 CRYST1 78.820 78.820 251.510 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003976 0.00000