data_9EOO # _entry.id 9EOO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9EOO pdb_00009eoo 10.2210/pdb9eoo/pdb WWPDB D_1292137338 ? ? EMDB EMD-19865 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-10-16 2 'Structure model' 1 1 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9EOO _pdbx_database_status.recvd_initial_deposition_date 2024-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '260A Vipp1 dL10Ala helical tubes in the presence of EPL' _pdbx_database_related.db_id EMD-19865 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email c.sachse@fz-juelich.de _pdbx_contact_author.name_first Carsten _pdbx_contact_author.name_last Sachse _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1168-5143 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Junglas, B.' 1 0000-0001-9348-3379 'Sachse, C.' 2 0000-0002-1168-5143 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary Nat.Struct.Mol.Biol. ? ? 1545-9985 ? ? ? ? ? ? 'Structural basis for Vipp1 membrane binding: from loose coats and carpets to ring and rod assemblies.' 2024 ? 10.1038/s41594-024-01399-z 39379528 ? ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Structural basis for Vipp1 membrane binding: From loose coats and carpets to ring and rod assemblies' 2024 ? 10.1101/2024.07.08.602470 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Junglas, B.' 1 ? primary 'Kartte, D.' 2 ? primary 'Kutzner, M.' 3 ? primary 'Hellmann, N.' 4 ? primary 'Ritter, I.' 5 ? primary 'Schneider, D.' 6 ? primary 'Sachse, C.' 7 ? 1 'Junglas, B.' 8 ? 1 'Kartte, D.' 9 ? 1 'Kutzner, M.' 10 ? 1 'Hellmann, N.' 11 ? 1 'Ritter, I.' 12 ? 1 'Schneider, D.' 13 ? 1 'Sachse, C.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Membrane-associated protein Vipp1' _entity.formula_weight 29857.445 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'Mutation of aa 157-167 to Ala' _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Vesicle-inducing protein in plastids 1,Vipp1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALT NGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLAAAA AAAAAAAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEASSGVEDELAALKASMAGGALPGTSAATPQLEAAPVDSS VPANNASQDDAVIDQELDDLRRRLNNLAALEVLFQGP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALT NGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLAAAA AAAAAAAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEASSGVEDELAALKASMAGGALPGTSAATPQLEAAPVDSS VPANNASQDDAVIDQELDDLRRRLNNLAALEVLFQGP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 LEU n 1 4 PHE n 1 5 ASP n 1 6 ARG n 1 7 LEU n 1 8 GLY n 1 9 ARG n 1 10 VAL n 1 11 VAL n 1 12 ARG n 1 13 ALA n 1 14 ASN n 1 15 LEU n 1 16 ASN n 1 17 ASP n 1 18 LEU n 1 19 VAL n 1 20 SER n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 ASP n 1 25 PRO n 1 26 GLU n 1 27 LYS n 1 28 VAL n 1 29 LEU n 1 30 GLU n 1 31 GLN n 1 32 ALA n 1 33 VAL n 1 34 ILE n 1 35 ASP n 1 36 MET n 1 37 GLN n 1 38 GLU n 1 39 ASP n 1 40 LEU n 1 41 VAL n 1 42 GLN n 1 43 LEU n 1 44 ARG n 1 45 GLN n 1 46 ALA n 1 47 VAL n 1 48 ALA n 1 49 ARG n 1 50 THR n 1 51 ILE n 1 52 ALA n 1 53 GLU n 1 54 GLU n 1 55 LYS n 1 56 ARG n 1 57 THR n 1 58 GLU n 1 59 GLN n 1 60 ARG n 1 61 LEU n 1 62 ASN n 1 63 GLN n 1 64 ASP n 1 65 THR n 1 66 GLN n 1 67 GLU n 1 68 ALA n 1 69 LYS n 1 70 LYS n 1 71 TRP n 1 72 GLU n 1 73 ASP n 1 74 ARG n 1 75 ALA n 1 76 LYS n 1 77 LEU n 1 78 ALA n 1 79 LEU n 1 80 THR n 1 81 ASN n 1 82 GLY n 1 83 GLU n 1 84 GLU n 1 85 ASN n 1 86 LEU n 1 87 ALA n 1 88 ARG n 1 89 GLU n 1 90 ALA n 1 91 LEU n 1 92 ALA n 1 93 ARG n 1 94 LYS n 1 95 LYS n 1 96 SER n 1 97 LEU n 1 98 THR n 1 99 ASP n 1 100 THR n 1 101 ALA n 1 102 ALA n 1 103 ALA n 1 104 TYR n 1 105 GLN n 1 106 THR n 1 107 GLN n 1 108 LEU n 1 109 ALA n 1 110 GLN n 1 111 GLN n 1 112 ARG n 1 113 THR n 1 114 MET n 1 115 SER n 1 116 GLU n 1 117 ASN n 1 118 LEU n 1 119 ARG n 1 120 ARG n 1 121 ASN n 1 122 LEU n 1 123 ALA n 1 124 ALA n 1 125 LEU n 1 126 GLU n 1 127 ALA n 1 128 LYS n 1 129 ILE n 1 130 SER n 1 131 GLU n 1 132 ALA n 1 133 LYS n 1 134 THR n 1 135 LYS n 1 136 LYS n 1 137 ASN n 1 138 MET n 1 139 LEU n 1 140 GLN n 1 141 ALA n 1 142 ARG n 1 143 ALA n 1 144 LYS n 1 145 ALA n 1 146 ALA n 1 147 LYS n 1 148 ALA n 1 149 ASN n 1 150 ALA n 1 151 GLU n 1 152 LEU n 1 153 GLN n 1 154 GLN n 1 155 THR n 1 156 LEU n 1 157 ALA n 1 158 ALA n 1 159 ALA n 1 160 ALA n 1 161 ALA n 1 162 ALA n 1 163 ALA n 1 164 ALA n 1 165 ALA n 1 166 ALA n 1 167 ALA n 1 168 PHE n 1 169 GLU n 1 170 ARG n 1 171 MET n 1 172 GLU n 1 173 ASN n 1 174 LYS n 1 175 VAL n 1 176 LEU n 1 177 ASP n 1 178 MET n 1 179 GLU n 1 180 ALA n 1 181 THR n 1 182 SER n 1 183 GLN n 1 184 ALA n 1 185 ALA n 1 186 GLY n 1 187 GLU n 1 188 LEU n 1 189 ALA n 1 190 GLY n 1 191 PHE n 1 192 GLY n 1 193 ILE n 1 194 GLU n 1 195 ASN n 1 196 GLN n 1 197 PHE n 1 198 ALA n 1 199 GLN n 1 200 LEU n 1 201 GLU n 1 202 ALA n 1 203 SER n 1 204 SER n 1 205 GLY n 1 206 VAL n 1 207 GLU n 1 208 ASP n 1 209 GLU n 1 210 LEU n 1 211 ALA n 1 212 ALA n 1 213 LEU n 1 214 LYS n 1 215 ALA n 1 216 SER n 1 217 MET n 1 218 ALA n 1 219 GLY n 1 220 GLY n 1 221 ALA n 1 222 LEU n 1 223 PRO n 1 224 GLY n 1 225 THR n 1 226 SER n 1 227 ALA n 1 228 ALA n 1 229 THR n 1 230 PRO n 1 231 GLN n 1 232 LEU n 1 233 GLU n 1 234 ALA n 1 235 ALA n 1 236 PRO n 1 237 VAL n 1 238 ASP n 1 239 SER n 1 240 SER n 1 241 VAL n 1 242 PRO n 1 243 ALA n 1 244 ASN n 1 245 ASN n 1 246 ALA n 1 247 SER n 1 248 GLN n 1 249 ASP n 1 250 ASP n 1 251 ALA n 1 252 VAL n 1 253 ILE n 1 254 ASP n 1 255 GLN n 1 256 GLU n 1 257 LEU n 1 258 ASP n 1 259 ASP n 1 260 LEU n 1 261 ARG n 1 262 ARG n 1 263 ARG n 1 264 LEU n 1 265 ASN n 1 266 ASN n 1 267 LEU n 1 268 ALA n 1 269 ALA n 1 270 LEU n 1 271 GLU n 1 272 VAL n 1 273 LEU n 1 274 PHE n 1 275 GLN n 1 276 GLY n 1 277 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 277 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'vipp1, sll0617' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechocystis sp. PCC 6803' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1148 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 2 GLY ALA A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 TRP 71 71 71 TRP TRP A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 MET 114 114 114 MET MET A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 MET 171 171 171 MET MET A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 MET 178 178 178 MET MET A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 PHE 191 191 191 PHE PHE A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 GLN 196 196 196 GLN GLN A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 GLN 199 199 199 GLN GLN A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 MET 217 217 ? ? ? A . n A 1 218 ALA 218 218 ? ? ? A . n A 1 219 GLY 219 219 ? ? ? A . n A 1 220 GLY 220 220 ? ? ? A . n A 1 221 ALA 221 221 ? ? ? A . n A 1 222 LEU 222 222 ? ? ? A . n A 1 223 PRO 223 223 ? ? ? A . n A 1 224 GLY 224 224 ? ? ? A . n A 1 225 THR 225 225 ? ? ? A . n A 1 226 SER 226 226 ? ? ? A . n A 1 227 ALA 227 227 ? ? ? A . n A 1 228 ALA 228 228 ? ? ? A . n A 1 229 THR 229 229 ? ? ? A . n A 1 230 PRO 230 230 ? ? ? A . n A 1 231 GLN 231 231 ? ? ? A . n A 1 232 LEU 232 232 ? ? ? A . n A 1 233 GLU 233 233 ? ? ? A . n A 1 234 ALA 234 234 ? ? ? A . n A 1 235 ALA 235 235 ? ? ? A . n A 1 236 PRO 236 236 ? ? ? A . n A 1 237 VAL 237 237 ? ? ? A . n A 1 238 ASP 238 238 ? ? ? A . n A 1 239 SER 239 239 ? ? ? A . n A 1 240 SER 240 240 ? ? ? A . n A 1 241 VAL 241 241 ? ? ? A . n A 1 242 PRO 242 242 ? ? ? A . n A 1 243 ALA 243 243 ? ? ? A . n A 1 244 ASN 244 244 ? ? ? A . n A 1 245 ASN 245 245 ? ? ? A . n A 1 246 ALA 246 246 ? ? ? A . n A 1 247 SER 247 247 ? ? ? A . n A 1 248 GLN 248 248 ? ? ? A . n A 1 249 ASP 249 249 ? ? ? A . n A 1 250 ASP 250 250 ? ? ? A . n A 1 251 ALA 251 251 ? ? ? A . n A 1 252 VAL 252 252 ? ? ? A . n A 1 253 ILE 253 253 ? ? ? A . n A 1 254 ASP 254 254 ? ? ? A . n A 1 255 GLN 255 255 ? ? ? A . n A 1 256 GLU 256 256 ? ? ? A . n A 1 257 LEU 257 257 ? ? ? A . n A 1 258 ASP 258 258 ? ? ? A . n A 1 259 ASP 259 259 ? ? ? A . n A 1 260 LEU 260 260 ? ? ? A . n A 1 261 ARG 261 261 ? ? ? A . n A 1 262 ARG 262 262 ? ? ? A . n A 1 263 ARG 263 263 ? ? ? A . n A 1 264 LEU 264 264 ? ? ? A . n A 1 265 ASN 265 265 ? ? ? A . n A 1 266 ASN 266 266 ? ? ? A . n A 1 267 LEU 267 267 ? ? ? A . n A 1 268 ALA 268 268 ? ? ? A . n A 1 269 ALA 269 269 ? ? ? A . n A 1 270 LEU 270 270 ? ? ? A . n A 1 271 GLU 271 271 ? ? ? A . n A 1 272 VAL 272 272 ? ? ? A . n A 1 273 LEU 273 273 ? ? ? A . n A 1 274 PHE 274 274 ? ? ? A . n A 1 275 GLN 275 275 ? ? ? A . n A 1 276 GLY 276 276 ? ? ? A . n A 1 277 PRO 277 277 ? ? ? A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9EOO _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9EOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9EOO _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9EOO _struct.title '260A Vipp1 dL10Ala helical tubes in the presence of EPL' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9EOO _struct_keywords.text 'membrane remodeling, membrane tubulation, LIPID BINDING PROTEIN' _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VIPP1_SYNY3 _struct_ref.pdbx_db_accession Q55707 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALT NGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLGGLG TSSATSAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEASSGVEDELAALKASMAGGALPGTSAATPQLEAAPVDSS VPANNASQDDAVIDQELDDLRRRLNNL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9EOO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 267 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q55707 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 267 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 267 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9EOO ALA A 157 ? UNP Q55707 GLY 157 'engineered mutation' 157 1 1 9EOO ALA A 158 ? UNP Q55707 GLY 158 'engineered mutation' 158 2 1 9EOO ALA A 159 ? UNP Q55707 LEU 159 'engineered mutation' 159 3 1 9EOO ALA A 160 ? UNP Q55707 GLY 160 'engineered mutation' 160 4 1 9EOO ALA A 161 ? UNP Q55707 THR 161 'engineered mutation' 161 5 1 9EOO ALA A 162 ? UNP Q55707 SER 162 'engineered mutation' 162 6 1 9EOO ALA A 163 ? UNP Q55707 SER 163 'engineered mutation' 163 7 1 9EOO ALA A 165 ? UNP Q55707 THR 165 'engineered mutation' 165 8 1 9EOO ALA A 166 ? UNP Q55707 SER 166 'engineered mutation' 166 9 1 9EOO ALA A 268 ? UNP Q55707 ? ? 'expression tag' 268 10 1 9EOO ALA A 269 ? UNP Q55707 ? ? 'expression tag' 269 11 1 9EOO LEU A 270 ? UNP Q55707 ? ? 'expression tag' 270 12 1 9EOO GLU A 271 ? UNP Q55707 ? ? 'expression tag' 271 13 1 9EOO VAL A 272 ? UNP Q55707 ? ? 'expression tag' 272 14 1 9EOO LEU A 273 ? UNP Q55707 ? ? 'expression tag' 273 15 1 9EOO PHE A 274 ? UNP Q55707 ? ? 'expression tag' 274 16 1 9EOO GLN A 275 ? UNP Q55707 ? ? 'expression tag' 275 17 1 9EOO GLY A 276 ? UNP Q55707 ? ? 'expression tag' 276 18 1 9EOO PRO A 277 ? UNP Q55707 ? ? 'expression tag' 277 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? -0.920526 -0.390682 -0.000530 786.01802 0.390682 -0.920526 -0.000198 520.18645 -0.000410 -0.000389 1.000000 -6.26743 3 'point symmetry operation' ? ? 0.694734 0.719267 0.000036 -140.74028 -0.719267 0.694734 -0.000221 348.50444 -0.000184 0.000128 1.000000 -13.05869 4 'point symmetry operation' ? ? -0.358515 -0.933524 -0.000474 779.42442 0.933524 -0.358515 0.000020 144.59668 -0.000188 -0.000435 1.000000 -19.60508 5 'point symmetry operation' ? ? -0.034691 0.999398 -0.000098 11.95035 -0.999398 -0.034691 -0.000400 691.65517 -0.000403 0.000084 1.000000 -26.24722 6 'point symmetry operation' ? ? 0.422380 -0.906419 -0.000278 504.55030 0.906419 0.422380 0.000133 -111.93182 -0.000003 -0.000308 1.000000 -32.58927 7 'point symmetry operation' ? ? -0.742935 0.669363 -0.000321 365.12937 -0.669363 -0.742935 -0.000430 820.22657 -0.000527 -0.000105 1.000000 -39.21918 8 'point symmetry operation' ? ? 0.945399 -0.325915 -0.000061 129.21662 0.325915 0.945399 0.000071 -92.30116 0.000035 -0.000087 1.000000 -45.75543 9 'point symmetry operation' ? ? 0.809386 -0.587277 -0.000134 264.73657 0.587277 0.809386 0.000115 -135.18278 0.000041 -0.000172 1.000000 78.31206 10 'point symmetry operation' ? ? -0.974500 0.224389 -0.000446 595.19839 -0.224389 -0.974500 -0.000357 747.97584 -0.000514 -0.000248 1.000000 71.98846 11 'point symmetry operation' ? ? 0.984717 0.174164 0.000023 -54.24291 -0.174164 0.984717 -0.000045 64.23751 -0.000031 0.000040 1.000000 65.18682 12 'point symmetry operation' ? ? -0.838414 -0.545034 -0.000531 810.55613 0.545034 -0.838414 -0.000150 439.94362 -0.000363 -0.000415 1.000000 58.91567 13 'point symmetry operation' ? ? 0.558846 0.829271 0.000020 -132.13567 -0.829271 0.558846 -0.000270 431.92808 -0.000235 0.000134 1.000000 52.14644 14 'point symmetry operation' ? ? -0.190451 -0.981697 -0.000440 738.61488 0.981697 -0.190451 0.000059 71.04582 -0.000142 -0.000421 1.000000 45.76407 15 'point symmetry operation' ? ? -0.208219 0.978082 -0.000145 78.21752 -0.978082 -0.208219 -0.000424 743.40437 -0.000445 0.000053 1.000000 39.16727 16 'point symmetry operation' ? ? 0.573789 -0.819003 -0.000227 423.49829 0.819003 0.573789 0.000136 -133.69153 0.000019 -0.000264 1.000000 32.77792 17 'point symmetry operation' ? ? -0.848159 0.529742 -0.000369 448.39024 -0.529742 -0.848159 -0.000412 808.69972 -0.000531 -0.000154 1.000000 26.38905 18 'point symmetry operation' ? ? 0.987713 -0.156280 -0.000025 57.31922 0.156280 0.987713 0.000036 -48.99059 0.000019 -0.000039 1.000000 19.62367 19 'point symmetry operation' ? ? -0.970270 -0.242025 -0.000516 752.38269 0.242025 -0.970270 -0.000244 587.87349 -0.000441 -0.000361 1.000000 13.15109 20 'point symmetry operation' ? ? 0.798605 0.601856 0.000046 -136.35563 -0.601856 0.798605 -0.000180 273.03702 -0.000145 0.000116 1.000000 6.34852 21 'point symmetry operation' ? ? -0.500002 -0.866024 -0.000499 804.59941 0.866024 -0.500002 -0.000016 215.67034 -0.000235 -0.000440 1.000000 0.02927 22 'point symmetry operation' ? ? 0.121921 0.992540 -0.000061 -39.00139 -0.992540 0.121921 -0.000377 636.06221 -0.000367 0.000106 1.000000 -6.65041 23 'point symmetry operation' ? ? 0.275537 -0.961291 -0.000324 573.16197 0.961291 0.275537 0.000122 -80.66590 -0.000028 -0.000345 1.000000 -12.95090 24 'point symmetry operation' ? ? -0.629197 0.777246 -0.000279 289.74508 -0.777246 -0.629197 -0.000440 818.24732 -0.000518 -0.000060 1.000000 -19.62060 25 'point symmetry operation' ? ? 0.882849 -0.469657 -0.000099 199.57236 0.469657 0.882849 0.000097 -119.93426 0.000042 -0.000132 1.000000 -26.12556 26 'point symmetry operation' ? ? -0.996172 0.087417 -0.000473 649.17575 -0.087417 -0.996172 -0.000327 708.36390 -0.000500 -0.000285 1.000000 -32.62824 27 'point symmetry operation' ? ? 0.951154 0.308717 0.000037 -88.35616 -0.308717 0.951154 -0.000083 121.64202 -0.000061 0.000068 1.000000 -39.23647 28 'point symmetry operation' ? ? -0.754951 -0.655781 -0.000528 819.84847 0.655782 -0.754951 -0.000109 373.70076 -0.000327 -0.000428 1.000000 -45.51607 29 'point symmetry operation' ? ? -0.913290 -0.407310 -0.000528 789.18943 0.407310 -0.913290 -0.000194 512.25630 -0.000403 -0.000392 1.000000 78.53839 30 'point symmetry operation' ? ? 0.681578 0.731746 0.000036 -140.72901 -0.731746 0.681578 -0.000228 357.01103 -0.000191 0.000129 1.000000 71.74997 31 'point symmetry operation' ? ? -0.341529 -0.939871 -0.000471 775.98369 0.939871 -0.341529 0.000026 136.44785 -0.000185 -0.000434 1.000000 65.60009 32 'point symmetry operation' ? ? -0.052806 0.998605 -0.000103 18.36248 -0.998605 -0.052806 -0.000405 697.53312 -0.000410 0.000081 1.000000 58.76265 33 'point symmetry operation' ? ? 0.438748 -0.898610 -0.000274 496.50662 0.898610 0.438748 0.000133 -114.85397 0.000001 -0.000304 1.000000 52.41514 34 'point symmetry operation' ? ? -0.754949 0.655783 -0.000327 373.81424 -0.655783 -0.754949 -0.000429 820.07907 -0.000529 -0.000109 1.000000 45.78993 35 'point symmetry operation' ? ? 0.951153 -0.308721 -0.000055 121.39054 0.308721 0.951153 0.000068 -88.62124 0.000031 -0.000082 1.000000 39.05076 36 'point symmetry operation' ? ? -0.996172 -0.087416 -0.000500 708.61369 0.087416 -0.996172 -0.000285 649.27583 -0.000473 -0.000327 1.000000 32.76700 37 'point symmetry operation' ? ? 0.882849 0.469657 0.000044 -120.06383 -0.469657 0.882849 -0.000132 199.61104 -0.000101 0.000096 1.000000 26.15755 38 'point symmetry operation' ? ? -0.629199 -0.777244 -0.000516 818.35679 0.777244 -0.629199 -0.000059 289.80584 -0.000279 -0.000438 1.000000 19.66076 39 'point symmetry operation' ? ? 0.275537 0.961290 -0.000028 -80.63938 -0.961290 0.275537 -0.000347 573.18952 -0.000325 0.000123 1.000000 12.94683 40 'point symmetry operation' ? ? 0.121921 -0.992540 -0.000365 636.04325 0.992540 0.121921 0.000109 -38.86188 -0.000063 -0.000375 1.000000 6.48804 41 'point symmetry operation' ? ? -0.500000 0.866026 -0.000232 215.59635 -0.866026 -0.500000 -0.000441 804.51194 -0.000498 -0.000019 1.000000 -0.02395 42 'point symmetry operation' ? ? 0.798604 -0.601856 -0.000141 273.18380 0.601856 0.798604 0.000116 -136.26296 0.000043 -0.000177 1.000000 -6.49343 43 'point symmetry operation' ? ? -0.970270 0.242025 -0.000443 587.78328 -0.242025 -0.970270 -0.000361 752.14999 -0.000517 -0.000243 1.000000 -13.01942 44 'point symmetry operation' ? ? 0.987713 0.156279 0.000023 -48.96018 -0.156279 0.987713 -0.000041 57.34751 -0.000029 0.000037 1.000000 -19.61973 45 'point symmetry operation' ? ? -0.848160 -0.529740 -0.000532 808.69188 0.529740 -0.848160 -0.000153 448.07314 -0.000370 -0.000412 1.000000 -26.09024 46 'point symmetry operation' ? ? 0.572599 0.819835 -0.000567 -133.29949 -0.819835 0.572599 -0.000529 424.27222 -0.000109 0.000768 1.000000 -32.91074 47 'point symmetry operation' ? ? -0.208218 -0.978082 -0.000443 743.45096 0.978082 -0.208218 0.000054 78.13128 -0.000145 -0.000423 1.000000 -39.04119 48 'point symmetry operation' ? ? -0.190449 0.981697 -0.000139 70.96345 -0.981697 -0.190449 -0.000422 738.60424 -0.000441 0.000056 1.000000 -45.84214 49 'point symmetry operation' ? ? 0.103903 0.994587 -0.000065 -33.58864 -0.994587 0.103903 -0.000379 642.87235 -0.000370 0.000104 1.000000 78.35850 50 'point symmetry operation' ? ? 0.292923 -0.956136 -0.000318 565.67361 0.956136 0.292922 0.000124 -84.83782 -0.000025 -0.000341 1.000000 72.05352 51 'point symmetry operation' ? ? -0.643188 0.765708 -0.000283 298.40713 -0.765708 -0.643188 -0.000439 819.46687 -0.000518 -0.000066 1.000000 65.38855 52 'point symmetry operation' ? ? 0.891220 -0.453571 -0.000094 191.23357 0.453571 0.891220 0.000094 -117.32149 0.000041 -0.000127 1.000000 58.87981 53 'point symmetry operation' ? ? -0.997593 0.069340 -0.000477 655.78624 -0.069340 -0.997593 -0.000323 703.08412 -0.000498 -0.000289 1.000000 52.37948 54 'point symmetry operation' ? ? 0.945399 0.325915 0.000037 -92.46708 -0.325915 0.945399 -0.000088 129.23659 -0.000064 0.000071 1.000000 45.57049 55 'point symmetry operation' ? ? -0.742934 -0.669364 -0.000527 820.35871 0.669364 -0.742934 -0.000104 365.18072 -0.000322 -0.000430 1.000000 39.28953 56 'point symmetry operation' ? ? 0.422382 0.906418 -0.000001 -111.94043 -0.906418 0.422382 -0.000311 504.58299 -0.000281 0.000132 1.000000 32.54559 57 'point symmetry operation' ? ? -0.034690 -0.999398 -0.000405 691.84968 0.999398 -0.034690 0.000085 11.85968 -0.000099 -0.000402 1.000000 26.32604 58 'point symmetry operation' ? ? -0.358513 0.933525 -0.000189 144.50497 -0.933525 -0.358513 -0.000438 779.35862 -0.000477 0.000020 1.000000 19.57229 59 'point symmetry operation' ? ? 0.694735 -0.719266 -0.000186 348.44241 0.719266 0.694735 0.000127 -140.88621 0.000038 -0.000222 1.000000 13.14075 60 'point symmetry operation' ? ? -0.920525 0.390684 -0.000410 520.30295 -0.390684 -0.920525 -0.000390 785.80440 -0.000530 -0.000199 1.000000 6.58668 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 2 ? LYS A 21 ? GLY A 2 LYS A 21 1 ? 20 HELX_P HELX_P2 AA2 ASP A 24 ? ASN A 81 ? ASP A 24 ASN A 81 1 ? 58 HELX_P HELX_P3 AA3 GLU A 83 ? ALA A 163 ? GLU A 83 ALA A 163 1 ? 81 HELX_P HELX_P4 AA4 ALA A 163 ? GLY A 190 ? ALA A 163 GLY A 190 1 ? 28 HELX_P HELX_P5 AA5 GLY A 192 ? ALA A 198 ? GLY A 192 ALA A 198 1 ? 7 HELX_P HELX_P6 AA6 VAL A 206 ? SER A 216 ? VAL A 206 SER A 216 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 9EOO _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9EOO _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9EOO _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 410963 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Vipp1 dL10Ala' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9EOO _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9EOO _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9EOO _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A MET 217 ? A MET 217 3 1 Y 1 A ALA 218 ? A ALA 218 4 1 Y 1 A GLY 219 ? A GLY 219 5 1 Y 1 A GLY 220 ? A GLY 220 6 1 Y 1 A ALA 221 ? A ALA 221 7 1 Y 1 A LEU 222 ? A LEU 222 8 1 Y 1 A PRO 223 ? A PRO 223 9 1 Y 1 A GLY 224 ? A GLY 224 10 1 Y 1 A THR 225 ? A THR 225 11 1 Y 1 A SER 226 ? A SER 226 12 1 Y 1 A ALA 227 ? A ALA 227 13 1 Y 1 A ALA 228 ? A ALA 228 14 1 Y 1 A THR 229 ? A THR 229 15 1 Y 1 A PRO 230 ? A PRO 230 16 1 Y 1 A GLN 231 ? A GLN 231 17 1 Y 1 A LEU 232 ? A LEU 232 18 1 Y 1 A GLU 233 ? A GLU 233 19 1 Y 1 A ALA 234 ? A ALA 234 20 1 Y 1 A ALA 235 ? A ALA 235 21 1 Y 1 A PRO 236 ? A PRO 236 22 1 Y 1 A VAL 237 ? A VAL 237 23 1 Y 1 A ASP 238 ? A ASP 238 24 1 Y 1 A SER 239 ? A SER 239 25 1 Y 1 A SER 240 ? A SER 240 26 1 Y 1 A VAL 241 ? A VAL 241 27 1 Y 1 A PRO 242 ? A PRO 242 28 1 Y 1 A ALA 243 ? A ALA 243 29 1 Y 1 A ASN 244 ? A ASN 244 30 1 Y 1 A ASN 245 ? A ASN 245 31 1 Y 1 A ALA 246 ? A ALA 246 32 1 Y 1 A SER 247 ? A SER 247 33 1 Y 1 A GLN 248 ? A GLN 248 34 1 Y 1 A ASP 249 ? A ASP 249 35 1 Y 1 A ASP 250 ? A ASP 250 36 1 Y 1 A ALA 251 ? A ALA 251 37 1 Y 1 A VAL 252 ? A VAL 252 38 1 Y 1 A ILE 253 ? A ILE 253 39 1 Y 1 A ASP 254 ? A ASP 254 40 1 Y 1 A GLN 255 ? A GLN 255 41 1 Y 1 A GLU 256 ? A GLU 256 42 1 Y 1 A LEU 257 ? A LEU 257 43 1 Y 1 A ASP 258 ? A ASP 258 44 1 Y 1 A ASP 259 ? A ASP 259 45 1 Y 1 A LEU 260 ? A LEU 260 46 1 Y 1 A ARG 261 ? A ARG 261 47 1 Y 1 A ARG 262 ? A ARG 262 48 1 Y 1 A ARG 263 ? A ARG 263 49 1 Y 1 A LEU 264 ? A LEU 264 50 1 Y 1 A ASN 265 ? A ASN 265 51 1 Y 1 A ASN 266 ? A ASN 266 52 1 Y 1 A LEU 267 ? A LEU 267 53 1 Y 1 A ALA 268 ? A ALA 268 54 1 Y 1 A ALA 269 ? A ALA 269 55 1 Y 1 A LEU 270 ? A LEU 270 56 1 Y 1 A GLU 271 ? A GLU 271 57 1 Y 1 A VAL 272 ? A VAL 272 58 1 Y 1 A LEU 273 ? A LEU 273 59 1 Y 1 A PHE 274 ? A PHE 274 60 1 Y 1 A GLN 275 ? A GLN 275 61 1 Y 1 A GLY 276 ? A GLY 276 62 1 Y 1 A PRO 277 ? A PRO 277 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 MET N N N N 192 MET CA C N S 193 MET C C N N 194 MET O O N N 195 MET CB C N N 196 MET CG C N N 197 MET SD S N N 198 MET CE C N N 199 MET OXT O N N 200 MET H H N N 201 MET H2 H N N 202 MET HA H N N 203 MET HB2 H N N 204 MET HB3 H N N 205 MET HG2 H N N 206 MET HG3 H N N 207 MET HE1 H N N 208 MET HE2 H N N 209 MET HE3 H N N 210 MET HXT H N N 211 PHE N N N N 212 PHE CA C N S 213 PHE C C N N 214 PHE O O N N 215 PHE CB C N N 216 PHE CG C Y N 217 PHE CD1 C Y N 218 PHE CD2 C Y N 219 PHE CE1 C Y N 220 PHE CE2 C Y N 221 PHE CZ C Y N 222 PHE OXT O N N 223 PHE H H N N 224 PHE H2 H N N 225 PHE HA H N N 226 PHE HB2 H N N 227 PHE HB3 H N N 228 PHE HD1 H N N 229 PHE HD2 H N N 230 PHE HE1 H N N 231 PHE HE2 H N N 232 PHE HZ H N N 233 PHE HXT H N N 234 PRO N N N N 235 PRO CA C N S 236 PRO C C N N 237 PRO O O N N 238 PRO CB C N N 239 PRO CG C N N 240 PRO CD C N N 241 PRO OXT O N N 242 PRO H H N N 243 PRO HA H N N 244 PRO HB2 H N N 245 PRO HB3 H N N 246 PRO HG2 H N N 247 PRO HG3 H N N 248 PRO HD2 H N N 249 PRO HD3 H N N 250 PRO HXT H N N 251 SER N N N N 252 SER CA C N S 253 SER C C N N 254 SER O O N N 255 SER CB C N N 256 SER OG O N N 257 SER OXT O N N 258 SER H H N N 259 SER H2 H N N 260 SER HA H N N 261 SER HB2 H N N 262 SER HB3 H N N 263 SER HG H N N 264 SER HXT H N N 265 THR N N N N 266 THR CA C N S 267 THR C C N N 268 THR O O N N 269 THR CB C N R 270 THR OG1 O N N 271 THR CG2 C N N 272 THR OXT O N N 273 THR H H N N 274 THR H2 H N N 275 THR HA H N N 276 THR HB H N N 277 THR HG1 H N N 278 THR HG21 H N N 279 THR HG22 H N N 280 THR HG23 H N N 281 THR HXT H N N 282 TRP N N N N 283 TRP CA C N S 284 TRP C C N N 285 TRP O O N N 286 TRP CB C N N 287 TRP CG C Y N 288 TRP CD1 C Y N 289 TRP CD2 C Y N 290 TRP NE1 N Y N 291 TRP CE2 C Y N 292 TRP CE3 C Y N 293 TRP CZ2 C Y N 294 TRP CZ3 C Y N 295 TRP CH2 C Y N 296 TRP OXT O N N 297 TRP H H N N 298 TRP H2 H N N 299 TRP HA H N N 300 TRP HB2 H N N 301 TRP HB3 H N N 302 TRP HD1 H N N 303 TRP HE1 H N N 304 TRP HE3 H N N 305 TRP HZ2 H N N 306 TRP HZ3 H N N 307 TRP HH2 H N N 308 TRP HXT H N N 309 TYR N N N N 310 TYR CA C N S 311 TYR C C N N 312 TYR O O N N 313 TYR CB C N N 314 TYR CG C Y N 315 TYR CD1 C Y N 316 TYR CD2 C Y N 317 TYR CE1 C Y N 318 TYR CE2 C Y N 319 TYR CZ C Y N 320 TYR OH O N N 321 TYR OXT O N N 322 TYR H H N N 323 TYR H2 H N N 324 TYR HA H N N 325 TYR HB2 H N N 326 TYR HB3 H N N 327 TYR HD1 H N N 328 TYR HD2 H N N 329 TYR HE1 H N N 330 TYR HE2 H N N 331 TYR HH H N N 332 TYR HXT H N N 333 VAL N N N N 334 VAL CA C N S 335 VAL C C N N 336 VAL O O N N 337 VAL CB C N N 338 VAL CG1 C N N 339 VAL CG2 C N N 340 VAL OXT O N N 341 VAL H H N N 342 VAL H2 H N N 343 VAL HA H N N 344 VAL HB H N N 345 VAL HG11 H N N 346 VAL HG12 H N N 347 VAL HG13 H N N 348 VAL HG21 H N N 349 VAL HG22 H N N 350 VAL HG23 H N N 351 VAL HXT H N N 352 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 LYS N CA sing N N 158 LYS N H sing N N 159 LYS N H2 sing N N 160 LYS CA C sing N N 161 LYS CA CB sing N N 162 LYS CA HA sing N N 163 LYS C O doub N N 164 LYS C OXT sing N N 165 LYS CB CG sing N N 166 LYS CB HB2 sing N N 167 LYS CB HB3 sing N N 168 LYS CG CD sing N N 169 LYS CG HG2 sing N N 170 LYS CG HG3 sing N N 171 LYS CD CE sing N N 172 LYS CD HD2 sing N N 173 LYS CD HD3 sing N N 174 LYS CE NZ sing N N 175 LYS CE HE2 sing N N 176 LYS CE HE3 sing N N 177 LYS NZ HZ1 sing N N 178 LYS NZ HZ2 sing N N 179 LYS NZ HZ3 sing N N 180 LYS OXT HXT sing N N 181 MET N CA sing N N 182 MET N H sing N N 183 MET N H2 sing N N 184 MET CA C sing N N 185 MET CA CB sing N N 186 MET CA HA sing N N 187 MET C O doub N N 188 MET C OXT sing N N 189 MET CB CG sing N N 190 MET CB HB2 sing N N 191 MET CB HB3 sing N N 192 MET CG SD sing N N 193 MET CG HG2 sing N N 194 MET CG HG3 sing N N 195 MET SD CE sing N N 196 MET CE HE1 sing N N 197 MET CE HE2 sing N N 198 MET CE HE3 sing N N 199 MET OXT HXT sing N N 200 PHE N CA sing N N 201 PHE N H sing N N 202 PHE N H2 sing N N 203 PHE CA C sing N N 204 PHE CA CB sing N N 205 PHE CA HA sing N N 206 PHE C O doub N N 207 PHE C OXT sing N N 208 PHE CB CG sing N N 209 PHE CB HB2 sing N N 210 PHE CB HB3 sing N N 211 PHE CG CD1 doub Y N 212 PHE CG CD2 sing Y N 213 PHE CD1 CE1 sing Y N 214 PHE CD1 HD1 sing N N 215 PHE CD2 CE2 doub Y N 216 PHE CD2 HD2 sing N N 217 PHE CE1 CZ doub Y N 218 PHE CE1 HE1 sing N N 219 PHE CE2 CZ sing Y N 220 PHE CE2 HE2 sing N N 221 PHE CZ HZ sing N N 222 PHE OXT HXT sing N N 223 PRO N CA sing N N 224 PRO N CD sing N N 225 PRO N H sing N N 226 PRO CA C sing N N 227 PRO CA CB sing N N 228 PRO CA HA sing N N 229 PRO C O doub N N 230 PRO C OXT sing N N 231 PRO CB CG sing N N 232 PRO CB HB2 sing N N 233 PRO CB HB3 sing N N 234 PRO CG CD sing N N 235 PRO CG HG2 sing N N 236 PRO CG HG3 sing N N 237 PRO CD HD2 sing N N 238 PRO CD HD3 sing N N 239 PRO OXT HXT sing N N 240 SER N CA sing N N 241 SER N H sing N N 242 SER N H2 sing N N 243 SER CA C sing N N 244 SER CA CB sing N N 245 SER CA HA sing N N 246 SER C O doub N N 247 SER C OXT sing N N 248 SER CB OG sing N N 249 SER CB HB2 sing N N 250 SER CB HB3 sing N N 251 SER OG HG sing N N 252 SER OXT HXT sing N N 253 THR N CA sing N N 254 THR N H sing N N 255 THR N H2 sing N N 256 THR CA C sing N N 257 THR CA CB sing N N 258 THR CA HA sing N N 259 THR C O doub N N 260 THR C OXT sing N N 261 THR CB OG1 sing N N 262 THR CB CG2 sing N N 263 THR CB HB sing N N 264 THR OG1 HG1 sing N N 265 THR CG2 HG21 sing N N 266 THR CG2 HG22 sing N N 267 THR CG2 HG23 sing N N 268 THR OXT HXT sing N N 269 TRP N CA sing N N 270 TRP N H sing N N 271 TRP N H2 sing N N 272 TRP CA C sing N N 273 TRP CA CB sing N N 274 TRP CA HA sing N N 275 TRP C O doub N N 276 TRP C OXT sing N N 277 TRP CB CG sing N N 278 TRP CB HB2 sing N N 279 TRP CB HB3 sing N N 280 TRP CG CD1 doub Y N 281 TRP CG CD2 sing Y N 282 TRP CD1 NE1 sing Y N 283 TRP CD1 HD1 sing N N 284 TRP CD2 CE2 doub Y N 285 TRP CD2 CE3 sing Y N 286 TRP NE1 CE2 sing Y N 287 TRP NE1 HE1 sing N N 288 TRP CE2 CZ2 sing Y N 289 TRP CE3 CZ3 doub Y N 290 TRP CE3 HE3 sing N N 291 TRP CZ2 CH2 doub Y N 292 TRP CZ2 HZ2 sing N N 293 TRP CZ3 CH2 sing Y N 294 TRP CZ3 HZ3 sing N N 295 TRP CH2 HH2 sing N N 296 TRP OXT HXT sing N N 297 TYR N CA sing N N 298 TYR N H sing N N 299 TYR N H2 sing N N 300 TYR CA C sing N N 301 TYR CA CB sing N N 302 TYR CA HA sing N N 303 TYR C O doub N N 304 TYR C OXT sing N N 305 TYR CB CG sing N N 306 TYR CB HB2 sing N N 307 TYR CB HB3 sing N N 308 TYR CG CD1 doub Y N 309 TYR CG CD2 sing Y N 310 TYR CD1 CE1 sing Y N 311 TYR CD1 HD1 sing N N 312 TYR CD2 CE2 doub Y N 313 TYR CD2 HD2 sing N N 314 TYR CE1 CZ doub Y N 315 TYR CE1 HE1 sing N N 316 TYR CE2 CZ sing Y N 317 TYR CE2 HE2 sing N N 318 TYR CZ OH sing N N 319 TYR OH HH sing N N 320 TYR OXT HXT sing N N 321 VAL N CA sing N N 322 VAL N H sing N N 323 VAL N H2 sing N N 324 VAL CA C sing N N 325 VAL CA CB sing N N 326 VAL CA HA sing N N 327 VAL C O doub N N 328 VAL C OXT sing N N 329 VAL CB CG1 sing N N 330 VAL CB CG2 sing N N 331 VAL CB HB sing N N 332 VAL CG1 HG11 sing N N 333 VAL CG1 HG12 sing N N 334 VAL CG1 HG13 sing N N 335 VAL CG2 HG21 sing N N 336 VAL CG2 HG22 sing N N 337 VAL CG2 HG23 sing N N 338 VAL OXT HXT sing N N 339 # _em_admin.current_status REL _em_admin.deposition_date 2024-03-15 _em_admin.deposition_site PDBE _em_admin.entry_id 9EOO _em_admin.last_update 2024-10-23 _em_admin.map_release_date 2024-10-16 _em_admin.title '260A Vipp1 dL10Ala helical tubes in the presence of EPL' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_embedding.details ? _em_embedding.id 1 _em_embedding.material 'vitreous ice' _em_embedding.specimen_id 1 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1148 _em_entity_assembly_naturalsource.organism 'Synechocystis sp. PCC 6803' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain C41 # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C3 _em_helical_entity.angular_rotation_per_subunit -157 _em_helical_entity.axial_rise_per_subunit 6.54 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied YES _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation (DFG)' Germany 'SA 1882/6-1' 1 'German Research Foundation (DFG)' Germany 'SCHN 690/16-1' 2 # _atom_sites.entry_id 9EOO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_