HEADER VIRAL PROTEIN 22-MAR-24 9EQP TITLE N-TERMINAL DOMAIN OF INFECTIOUS BURSAL DISEASE VIRUS (IBDV) VP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP3; COMPND 3 CHAIN: A, B, C, D, E, F, G, I; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFECTIOUS BURSAL DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: GUMBORO VIRUS; SOURCE 4 ORGANISM_TAXID: 10995; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSET-C KEYWDS DSRNA BINDING PROTEIN, BIRNAVIRUS, IBDV, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.S.FERRERO,N.VERDAGUER REVDAT 1 09-OCT-24 9EQP 0 JRNL AUTH D.S.FERRERO,N.VERDAGUER JRNL TITL STRUCTURE OF THE AMINO TERMINAL DOMAIN OF THE BIRNAVIRAL JRNL TITL 2 MULTIFUNCTIONAL VP3 PROTEIN AND ITS UNEXPLORED CRITICAL JRNL TITL 3 ROLE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_4788: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 19924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6000 - 6.6900 0.94 2786 174 0.1861 0.2160 REMARK 3 2 6.6900 - 5.3100 0.96 2697 157 0.2582 0.2669 REMARK 3 3 5.3100 - 4.6400 0.96 2677 140 0.2287 0.2387 REMARK 3 4 4.6400 - 4.2200 0.97 2722 108 0.2190 0.2798 REMARK 3 5 4.2200 - 3.9200 0.97 2696 133 0.2702 0.2791 REMARK 3 6 3.9200 - 3.6800 0.97 2668 135 0.2964 0.3443 REMARK 3 7 3.6800 - 3.5000 0.98 2693 138 0.3470 0.3398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.859 NULL REMARK 3 CHIRALITY : 0.053 1184 REMARK 3 PLANARITY : 0.022 1558 REMARK 3 DIHEDRAL : 15.373 3323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 91 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6760 -1.1088 -44.7324 REMARK 3 T TENSOR REMARK 3 T11: 0.6215 T22: 0.7718 REMARK 3 T33: 0.7364 T12: -0.0226 REMARK 3 T13: -0.0052 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 5.0213 L22: 3.0826 REMARK 3 L33: 2.3959 L12: -2.2781 REMARK 3 L13: -1.2586 L23: 0.7760 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -0.1999 S13: 0.3143 REMARK 3 S21: -0.0731 S22: 0.1207 S23: -0.3433 REMARK 3 S31: -0.0750 S32: 0.2786 S33: -0.0203 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 91 THROUGH 221) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8506 -1.2301 -42.6344 REMARK 3 T TENSOR REMARK 3 T11: 0.6926 T22: 0.7688 REMARK 3 T33: 0.7222 T12: 0.0476 REMARK 3 T13: -0.0180 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 4.8862 L22: 3.1458 REMARK 3 L33: 2.3189 L12: -1.2643 REMARK 3 L13: 0.3793 L23: 0.1544 REMARK 3 S TENSOR REMARK 3 S11: 0.1219 S12: 0.0817 S13: -0.1549 REMARK 3 S21: -0.3145 S22: -0.1598 S23: 0.5156 REMARK 3 S31: -0.2800 S32: -0.0387 S33: -0.0023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 91 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3486 -20.0080 -60.2387 REMARK 3 T TENSOR REMARK 3 T11: 0.7769 T22: 0.7729 REMARK 3 T33: 0.7723 T12: 0.0043 REMARK 3 T13: 0.0411 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 3.7862 L22: 3.3591 REMARK 3 L33: 5.1769 L12: -1.5588 REMARK 3 L13: 2.6619 L23: -1.9384 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: -0.1732 S13: -0.1765 REMARK 3 S21: -0.1119 S22: 0.0348 S23: -0.0372 REMARK 3 S31: 0.1210 S32: -0.0957 S33: -0.0450 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 91 THROUGH 219) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2906 17.0195 -57.4663 REMARK 3 T TENSOR REMARK 3 T11: 1.1235 T22: 0.8349 REMARK 3 T33: 0.9453 T12: 0.0624 REMARK 3 T13: -0.1735 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 2.1487 L22: 1.9367 REMARK 3 L33: 4.2016 L12: -0.4614 REMARK 3 L13: -1.4617 L23: 0.9388 REMARK 3 S TENSOR REMARK 3 S11: -0.3188 S12: -0.1238 S13: -0.0264 REMARK 3 S21: -0.3107 S22: 0.1598 S23: 0.4447 REMARK 3 S31: 0.4089 S32: -0.1975 S33: 0.0587 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 91 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6511 -20.7798 -77.4076 REMARK 3 T TENSOR REMARK 3 T11: 1.0391 T22: 0.8467 REMARK 3 T33: 0.9451 T12: -0.0995 REMARK 3 T13: -0.1074 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 3.3806 L22: 2.2138 REMARK 3 L33: 5.9587 L12: -0.7034 REMARK 3 L13: 1.8731 L23: -1.4088 REMARK 3 S TENSOR REMARK 3 S11: 0.1533 S12: 0.5899 S13: -0.0460 REMARK 3 S21: -0.7003 S22: -0.0166 S23: 0.2580 REMARK 3 S31: 0.3666 S32: 0.4832 S33: -0.0717 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 91 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1661 17.8999 -75.1955 REMARK 3 T TENSOR REMARK 3 T11: 1.2221 T22: 0.9042 REMARK 3 T33: 0.9440 T12: -0.0900 REMARK 3 T13: -0.1029 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 2.3122 REMARK 3 L33: 5.5735 L12: -0.8540 REMARK 3 L13: -0.7680 L23: 1.7785 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.1294 S13: 0.0826 REMARK 3 S21: -0.3816 S22: 0.0284 S23: -0.2498 REMARK 3 S31: -0.1693 S32: -0.1130 S33: 0.0402 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 91 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6084 -21.9070 -9.4040 REMARK 3 T TENSOR REMARK 3 T11: 0.8940 T22: 1.2631 REMARK 3 T33: 0.7738 T12: 0.1675 REMARK 3 T13: 0.1462 T23: 0.2323 REMARK 3 L TENSOR REMARK 3 L11: 1.7309 L22: 2.2400 REMARK 3 L33: 4.5444 L12: 1.6165 REMARK 3 L13: -1.3383 L23: -2.1223 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.1856 S13: 0.1521 REMARK 3 S21: 0.2712 S22: 0.1866 S23: 0.4277 REMARK 3 S31: -0.0668 S32: -0.6870 S33: -0.0883 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'I' AND RESID 91 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4014 -39.6694 -7.8346 REMARK 3 T TENSOR REMARK 3 T11: 0.9864 T22: 1.2865 REMARK 3 T33: 0.8887 T12: -0.0601 REMARK 3 T13: 0.1079 T23: 0.2665 REMARK 3 L TENSOR REMARK 3 L11: 0.5546 L22: 1.1950 REMARK 3 L33: 3.1189 L12: 0.2350 REMARK 3 L13: -0.6587 L23: -0.9233 REMARK 3 S TENSOR REMARK 3 S11: -0.1492 S12: 0.3294 S13: -0.4444 REMARK 3 S21: -0.3576 S22: 0.2017 S23: 0.1606 REMARK 3 S31: 1.0829 S32: -0.8879 S33: -0.0718 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19960 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.18680 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 1.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M LISO4, 0.05 M SODIUM CACODYLATE REMARK 280 PH6.0, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.34350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.50600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.70800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 138.50600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.34350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.70800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 221 REMARK 465 ASN C 221 REMARK 465 ARG D 220 REMARK 465 ASN D 221 REMARK 465 ASN E 221 REMARK 465 ASN F 221 REMARK 465 ASN G 221 REMARK 465 ASN I 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 168 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 216 OE1 GLU B 108 1.69 REMARK 500 NE2 GLN F 165 NH2 ARG F 168 1.77 REMARK 500 OE1 GLN F 165 NH2 ARG F 168 1.87 REMARK 500 OE1 GLN G 165 NH2 ARG G 168 1.97 REMARK 500 CD GLN F 165 NH2 ARG F 168 2.02 REMARK 500 OE2 GLU A 216 CD ARG A 220 2.06 REMARK 500 OD1 ASN I 123 O PRO I 145 2.09 REMARK 500 CD LYS C 105 NH2 ARG E 220 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN E 204 OE2 GLU F 164 3644 1.53 REMARK 500 NE2 GLN E 204 CD GLU F 164 3644 1.89 REMARK 500 OE1 GLU D 147 O SER E 158 3554 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 133 C LYS B 134 N 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 154 55.12 -104.51 REMARK 500 ASN C 146 -20.79 77.68 REMARK 500 HIS C 154 65.74 -104.75 REMARK 500 LYS D 157 -77.30 -93.12 REMARK 500 GLN D 179 50.41 -91.02 REMARK 500 GLU E 156 81.73 -163.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 159 0.20 SIDE CHAIN REMARK 500 ARG A 220 0.25 SIDE CHAIN REMARK 500 ARG B 159 0.19 SIDE CHAIN REMARK 500 ARG F 159 0.26 SIDE CHAIN REMARK 500 ARG G 200 0.10 SIDE CHAIN REMARK 500 ARG I 159 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9EQP A 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP B 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP C 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP D 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP E 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP F 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP G 91 221 UNP P61825 POLS_IBDV 846 976 DBREF 9EQP I 91 221 UNP P61825 POLS_IBDV 846 976 SEQRES 1 A 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 A 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 A 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 A 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 A 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 A 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 A 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 A 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 A 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 A 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 A 131 ASN SEQRES 1 B 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 B 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 B 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 B 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 B 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 B 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 B 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 B 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 B 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 B 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 B 131 ASN SEQRES 1 C 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 C 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 C 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 C 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 C 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 C 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 C 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 C 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 C 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 C 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 C 131 ASN SEQRES 1 D 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 D 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 D 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 D 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 D 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 D 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 D 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 D 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 D 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 D 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 D 131 ASN SEQRES 1 E 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 E 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 E 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 E 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 E 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 E 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 E 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 E 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 E 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 E 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 E 131 ASN SEQRES 1 F 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 F 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 F 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 F 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 F 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 F 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 F 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 F 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 F 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 F 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 F 131 ASN SEQRES 1 G 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 G 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 G 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 G 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 G 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 G 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 G 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 G 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 G 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 G 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 G 131 ASN SEQRES 1 I 131 THR PRO GLU GLU ALA GLN ARG GLU LYS ASP THR ARG ILE SEQRES 2 I 131 SER LYS LYS MET GLU THR MET GLY ILE TYR PHE ALA THR SEQRES 3 I 131 PRO GLU TRP VAL ALA LEU ASN GLY HIS ARG GLY PRO SER SEQRES 4 I 131 PRO GLY GLN LEU LYS TYR TRP GLN ASN THR ARG GLU ILE SEQRES 5 I 131 PRO ASP PRO ASN GLU ASP TYR LEU ASP TYR VAL HIS ALA SEQRES 6 I 131 GLU LYS SER ARG LEU ALA SER GLU GLU GLN ILE LEU ARG SEQRES 7 I 131 ALA ALA THR SER ILE TYR GLY ALA PRO GLY GLN ALA GLU SEQRES 8 I 131 PRO PRO GLN ALA PHE ILE ASP GLU VAL ALA LYS VAL TYR SEQRES 9 I 131 GLU ILE ASN HIS GLY ARG GLY PRO ASN GLN GLU GLN MET SEQRES 10 I 131 LYS ASP LEU LEU LEU THR ALA MET GLU MET LYS HIS ARG SEQRES 11 I 131 ASN HELIX 1 AA1 THR A 91 MET A 110 1 20 HELIX 2 AA2 THR A 116 ASN A 123 1 8 HELIX 3 AA3 SER A 129 ARG A 140 1 12 HELIX 4 AA4 SER A 162 GLY A 175 1 14 HELIX 5 AA5 PRO A 183 ASN A 197 1 15 HELIX 6 AA6 ASN A 203 LYS A 218 1 16 HELIX 7 AA7 PRO B 92 MET B 110 1 19 HELIX 8 AA8 THR B 116 ASN B 123 1 8 HELIX 9 AA9 SER B 129 ARG B 140 1 12 HELIX 10 AB1 TYR B 149 VAL B 153 5 5 HELIX 11 AB2 SER B 162 GLY B 175 1 14 HELIX 12 AB3 PRO B 183 ASN B 197 1 15 HELIX 13 AB4 ASN B 203 ASN B 221 1 19 HELIX 14 AB5 PRO C 92 MET C 110 1 19 HELIX 15 AB6 THR C 116 ASN C 123 1 8 HELIX 16 AB7 SER C 129 ARG C 140 1 12 HELIX 17 AB8 SER C 162 GLY C 175 1 14 HELIX 18 AB9 PRO C 183 ASN C 197 1 15 HELIX 19 AC1 ASN C 203 ARG C 220 1 18 HELIX 20 AC2 PRO D 92 MET D 110 1 19 HELIX 21 AC3 THR D 116 ASN D 123 1 8 HELIX 22 AC4 SER D 129 ARG D 140 1 12 HELIX 23 AC5 SER D 162 TYR D 174 1 13 HELIX 24 AC6 PRO D 183 ASN D 197 1 15 HELIX 25 AC7 ASN D 203 HIS D 219 1 17 HELIX 26 AC8 PRO E 92 MET E 110 1 19 HELIX 27 AC9 THR E 116 ASN E 123 1 8 HELIX 28 AD1 SER E 129 ARG E 140 1 12 HELIX 29 AD2 SER E 162 GLY E 175 1 14 HELIX 30 AD3 PRO E 183 ASN E 197 1 15 HELIX 31 AD4 ASN E 203 ARG E 220 1 18 HELIX 32 AD5 PRO F 92 MET F 110 1 19 HELIX 33 AD6 THR F 116 ASN F 123 1 8 HELIX 34 AD7 SER F 129 ARG F 140 1 12 HELIX 35 AD8 SER F 162 GLY F 175 1 14 HELIX 36 AD9 PRO F 183 ASN F 197 1 15 HELIX 37 AE1 ASN F 203 LYS F 218 1 16 HELIX 38 AE2 PRO G 92 MET G 110 1 19 HELIX 39 AE3 THR G 116 ASN G 123 1 8 HELIX 40 AE4 SER G 129 ARG G 140 1 12 HELIX 41 AE5 SER G 162 GLY G 175 1 14 HELIX 42 AE6 PRO G 183 ASN G 197 1 15 HELIX 43 AE7 ASN G 203 ARG G 220 1 18 HELIX 44 AE8 PRO I 92 MET I 110 1 19 HELIX 45 AE9 THR I 116 ASN I 123 1 8 HELIX 46 AF1 SER I 129 ARG I 140 1 12 HELIX 47 AF2 SER I 162 GLY I 175 1 14 HELIX 48 AF3 PRO I 183 ASN I 197 1 15 HELIX 49 AF4 ASN I 203 HIS I 219 1 17 CRYST1 50.687 111.416 277.012 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019729 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003610 0.00000