HEADER RNA BINDING PROTEIN 25-MAR-24 9ERV TITLE STRUCTURE OF SALMONELLA CAPREL BOUND TO BAS11 GP54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RELA/SPOT FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GP54; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA; SOURCE 3 ORGANISM_TAXID: 590; SOURCE 4 GENE: J46_0058; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BACTERIOPHAGE SP.; SOURCE 9 ORGANISM_TAXID: 38018; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TRNA PYROPHOSPHOKINASE, ACTIVATED ENZYME COMPLEX, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO REVDAT 1 06-NOV-24 9ERV 0 JRNL AUTH T.ZHANG,A.CEPAUSKAS,A.NADIEINA,A.THUREAU, JRNL AUTH 2 K.COPPIETERS 'T WALLANT,C.MARTENS,D.C.LIM,A.GARCIA-PINO, JRNL AUTH 3 M.T.LAUB JRNL TITL A BACTERIAL IMMUNITY PROTEIN DIRECTLY SENSES TWO DISPARATE JRNL TITL 2 PHAGE PROTEINS. JRNL REF NATURE 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 39415022 JRNL DOI 10.1038/S41586-024-08039-Y REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (24-FEB-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 22597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1127 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 40.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 436 REMARK 3 BIN R VALUE (WORKING SET) : 0.2879 REMARK 3 BIN FREE R VALUE : 0.3598 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.54 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.86250 REMARK 3 B22 (A**2) : 2.22460 REMARK 3 B33 (A**2) : -0.36210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.345 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.235 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.297 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.226 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3187 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4288 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1175 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 537 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3182 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 421 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2618 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.92 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.23 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.4373 72.3951 84.0008 REMARK 3 T TENSOR REMARK 3 T11: -0.0501 T22: -0.0248 REMARK 3 T33: -0.0401 T12: 0.0093 REMARK 3 T13: 0.0004 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.0210 L22: 0.3412 REMARK 3 L33: 0.3952 L12: 0.3057 REMARK 3 L13: 0.0666 L23: 0.0280 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0331 S13: 0.0139 REMARK 3 S21: -0.0210 S22: 0.0165 S23: 0.0101 REMARK 3 S31: -0.0149 S32: 0.0074 S33: -0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.3474 59.1532 65.7593 REMARK 3 T TENSOR REMARK 3 T11: -0.0888 T22: -0.0468 REMARK 3 T33: -0.1949 T12: -0.0069 REMARK 3 T13: -0.0116 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.2254 L22: 1.9349 REMARK 3 L33: 6.9338 L12: -0.3677 REMARK 3 L13: -0.3069 L23: 1.3361 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0420 S13: -0.1005 REMARK 3 S21: 0.0482 S22: 0.1333 S23: -0.1115 REMARK 3 S31: 0.5420 S32: 0.2764 S33: -0.1494 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ERV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.27000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.61750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.61750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.84750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.63200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.84750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.63200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.61750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.84750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.63200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.61750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.84750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.63200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 TYR A 6 REMARK 465 GLN A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 CYS A 11 REMARK 465 GLU A 12 REMARK 465 PRO A 93 REMARK 465 SER A 94 REMARK 465 LEU A 95 REMARK 465 ASP A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 THR A 100 REMARK 465 ASN A 101 REMARK 465 ASN A 102 REMARK 465 THR A 297 REMARK 465 LYS A 298 REMARK 465 ASN A 299 REMARK 465 GLY A 300 REMARK 465 LYS A 301 REMARK 465 ASP A 302 REMARK 465 THR A 303 REMARK 465 VAL A 373 REMARK 465 MET B -11 REMARK 465 LYS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 4 REMARK 465 ILE B 5 REMARK 465 ASP B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 VAL B 9 REMARK 465 ILE B 10 REMARK 465 ARG B 11 REMARK 465 ARG B 12 REMARK 465 ASN B 13 REMARK 465 PRO B 14 REMARK 465 ASP B 58 REMARK 465 GLU B 59 REMARK 465 HIS B 60 REMARK 465 THR B 61 REMARK 465 VAL B 62 REMARK 465 MET B 63 REMARK 465 GLU B 64 REMARK 465 VAL B 65 REMARK 465 ILE B 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 ARG A 92 CD NE CZ NH1 NH2 REMARK 470 ILE A 104 CG1 CG2 CD1 REMARK 470 GLU A 239 CD OE1 OE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LEU B 16 CG CD1 CD2 REMARK 470 LYS B 46 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 169 -86.78 -126.49 REMARK 500 HIS A 213 55.74 38.41 REMARK 500 ASN A 283 44.07 -103.85 REMARK 500 ASN A 285 26.17 -156.16 REMARK 500 ASP A 371 37.38 -88.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 823 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 824 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 825 DISTANCE = 6.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD2 REMARK 620 2 ATP A 402 O1G 88.9 REMARK 620 3 ATP A 402 O1B 92.7 88.6 REMARK 620 N 1 2 DBREF1 9ERV A 2 373 UNP A0A1B0VBT5_9CAUD DBREF2 9ERV A A0A1B0VBT5 2 373 DBREF 9ERV B -11 66 PDB 9ERV 9ERV -11 66 SEQRES 1 A 372 GLY SER GLU VAL TYR GLN SER GLN LYS CYS GLU LEU LYS SEQRES 2 A 372 TYR SER LYS SER GLN ILE GLU LYS ALA ALA ARG LYS ILE SEQRES 3 A 372 ARG HIS GLY CYS GLU GLY ALA GLU ARG GLU GLU ALA ILE SEQRES 4 A 372 LYS MET ILE GLN ASN PHE ARG GLU LEU HIS LEU TYR PRO SEQRES 5 A 372 LEU MET LEU MET LYS ASN HIS LEU ASP ARG ALA ALA LYS SEQRES 6 A 372 LYS VAL ASP LYS GLU ASN LYS ILE ILE VAL ALA ARG ARG SEQRES 7 A 372 LEU LYS ARG LEU SER THR ILE ILE ASP LYS LEU GLU ARG SEQRES 8 A 372 PRO SER LEU ASP GLY GLY ALA THR ASN ASN ALA ILE ALA SEQRES 9 A 372 LEU THR ARG MET GLN ASP ILE GLY GLY CYS ARG ALA ILE SEQRES 10 A 372 VAL ARG ASN ILE GLU GLN LEU LYS LYS LEU LYS ASP ARG SEQRES 11 A 372 LEU VAL LYS SER ARG SER LYS HIS LYS ILE LEU LYS GLU SEQRES 12 A 372 TYR ASP TYR LEU THR PRO LYS PRO SER GLY TYR SER GLY SEQRES 13 A 372 ILE HIS LEU ALA TYR SER CYS PHE ASP GLU GLU ASN GLY SEQRES 14 A 372 ASN ASN PRO TRP SER LYS THR LYS ILE GLU VAL GLN LEU SEQRES 15 A 372 ARG THR GLU LEU GLN HIS ALA TRP ALA THR SER LEU GLU SEQRES 16 A 372 ILE ILE ASP THR LEU GLU ASN ILE LYS LEU LYS THR SER SEQRES 17 A 372 ASN GLU GLY HIS PRO GLU TRP ARG ARG PHE PHE TYR LEU SEQRES 18 A 372 SER GLY CYS LEU VAL ALA HIS ASP GLU GLY ALA CYS ILE SEQRES 19 A 372 LEU ASP ASP GLU THR ILE LYS ASN TYR GLN THR GLU LEU SEQRES 20 A 372 LYS THR LEU GLU GLU ALA LEU SER VAL ARG SER LYS LEU SEQRES 21 A 372 SER THR TYR THR PHE ALA MET LYS LEU THR SER ASP ALA SEQRES 22 A 372 ASN LEU LYS LYS SER LEU PRO LYS ASN HIS ASN GLY PHE SEQRES 23 A 372 PHE LEU VAL ARG MET ARG ASN ALA ILE THR LYS ASN GLY SEQRES 24 A 372 LYS ASP THR GLY LYS PHE LEU VAL SER VAL LYS PRO PHE SEQRES 25 A 372 ARG LYS LYS GLU SER GLU GLN ALA LEU GLN GLU LEU ASN SEQRES 26 A 372 LYS ASP ASP ALA ASP PRO GLU VAL LEU ILE ALA VAL LEU SEQRES 27 A 372 LEU ALA THR ASN ASN ILE LYS SER LEU LYS LYS ALA TYR SEQRES 28 A 372 PRO ASN TYR PHE GLY SER THR ASN GLN PHE GLY ARG PHE SEQRES 29 A 372 LEU SER ARG HIS ILE ASP THR VAL SEQRES 1 B 78 MET LYS HIS HIS HIS HIS HIS HIS GLY SER SER GLY MET SEQRES 2 B 78 GLN ASP GLN ILE ASP ALA LYS VAL ILE ARG ARG ASN PRO SEQRES 3 B 78 GLU LEU THR PRO GLY ILE PHE LYS LYS GLY ILE GLU ILE SEQRES 4 B 78 THR ILE ASP LEU GLU GLU MET VAL CYS TYR HIS SER GLY SEQRES 5 B 78 LEU THR TRP LYS VAL LYS GLN LEU THR ASN THR LEU TRP SEQRES 6 B 78 SER LEU ALA GLY ASP GLU HIS THR VAL MET GLU VAL ILE HET GOL A 401 6 HET ATP A 402 31 HET MG A 403 1 HET NA A 404 1 HETNAM GOL GLYCEROL HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 NA NA 1+ FORMUL 7 HOH *354(H2 O) HELIX 1 AA1 SER A 16 HIS A 29 1 14 HELIX 2 AA2 GLU A 32 HIS A 50 1 19 HELIX 3 AA3 HIS A 50 ASP A 69 1 20 HELIX 4 AA4 ARG A 82 GLU A 91 1 10 HELIX 5 AA5 ALA A 105 MET A 109 5 5 HELIX 6 AA6 ASN A 121 SER A 135 1 15 HELIX 7 AA7 GLU A 186 GLU A 202 1 17 HELIX 8 AA8 HIS A 213 GLU A 231 1 19 HELIX 9 AA9 ASP A 237 SER A 256 1 20 HELIX 10 AB1 SER A 256 SER A 272 1 17 HELIX 11 AB2 ASP A 273 LEU A 280 1 8 HELIX 12 AB3 ARG A 314 LYS A 316 5 3 HELIX 13 AB4 GLU A 317 ASP A 331 1 15 HELIX 14 AB5 THR A 342 TYR A 352 1 11 HELIX 15 AB6 ASN A 354 ASP A 371 1 18 SHEET 1 AA1 5 ILE A 75 LEU A 80 0 SHEET 2 AA1 5 GLY A 113 VAL A 119 -1 O ILE A 118 N ILE A 75 SHEET 3 AA1 5 THR A 177 THR A 185 1 O GLN A 182 N CYS A 115 SHEET 4 AA1 5 GLY A 157 CYS A 164 -1 N CYS A 164 O THR A 177 SHEET 5 AA1 5 LYS A 140 TYR A 147 -1 N TYR A 145 O HIS A 159 SHEET 1 AA2 8 GLY B 19 LYS B 23 0 SHEET 2 AA2 8 VAL A 334 ALA A 341 -1 N LEU A 339 O ILE B 20 SHEET 3 AA2 8 PHE A 287 ASN A 294 -1 N PHE A 288 O LEU A 340 SHEET 4 AA2 8 LYS A 305 PHE A 313 -1 O LEU A 307 N ARG A 293 SHEET 5 AA2 8 LEU B 52 ALA B 56 -1 O TRP B 53 N VAL A 308 SHEET 6 AA2 8 LEU B 41 THR B 49 -1 N LYS B 44 O ALA B 56 SHEET 7 AA2 8 VAL B 35 HIS B 38 -1 N CYS B 36 O TRP B 43 SHEET 8 AA2 8 ILE B 27 ASP B 30 -1 N THR B 28 O TYR B 37 LINK OD2 ASP A 111 MG MG A 403 1555 1555 2.19 LINK O1G ATP A 402 MG MG A 403 1555 1555 2.65 LINK O1B ATP A 402 MG MG A 403 1555 1555 2.51 LINK NA NA A 404 O HOH A 530 1555 1555 2.81 CRYST1 49.695 103.264 209.235 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004779 0.00000