HEADER CELL CYCLE 26-MAR-24 9ESY TITLE CDK2-CYCLIN A IN COMPLEX WITH FRAGLITE 16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CELL DIVISION PROTEIN KINASE 2,P33 PROTEIN KINASE; COMPND 5 EC: 2.7.11.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-A2; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: CYCLIN-A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK2, CDKN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 11 ORGANISM_COMMON: CATTLE; SOURCE 12 ORGANISM_TAXID: 9913; SOURCE 13 GENE: CCNA2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS CYCLIN-DEPENDENT KINASE, FRAGLITE, CDK2, CYCLIN A, FRAGMENT, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR I.HOPE,M.P.MARTIN,M.J.WARING,M.E.M.NOBLE,J.A.ENDICOTT,N.J.TATUM REVDAT 1 09-APR-25 9ESY 0 JRNL AUTH I.HOPE,M.P.MARTIN,M.J.WARING,M.E.M.NOBLE,J.A.ENDICOTT, JRNL AUTH 2 N.J.TATUM JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING OF CDK2-CYCLIN A: JRNL TITL 2 FRAGLITES MAP SITES OF PROTEIN-PROTEIN INTERACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 58304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.103 REMARK 3 FREE R VALUE TEST SET COUNT : 2975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.38 REMARK 3 BIN R VALUE (WORKING SET) : 1.1340 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 1.0300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00600 REMARK 3 B22 (A**2) : 0.64700 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.439 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9037 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12278 ; 1.696 ; 1.848 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 5.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;19.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1580 ;14.757 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1395 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6744 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4271 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6187 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 432 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4361 ; 3.401 ; 3.175 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5446 ; 5.128 ; 5.694 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4676 ; 4.791 ; 3.396 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6832 ; 7.061 ; 6.094 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9ESY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89842 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 148.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 10.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 148.0 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.05100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 31.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 10 MG/ML. 0.6 TO 0.8 M KCL, REMARK 280 0.9 TO 1.2 M (NH4)2SO4, AND 100 MM HEPES PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.03650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.02800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.81750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.02800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.03650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.81750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ARG A 297 REMARK 465 LEU A 298 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 GLY C 220 REMARK 465 THR C 221 REMARK 465 PRO C 222 REMARK 465 ASP C 223 REMARK 465 GLU C 224 REMARK 465 VAL C 225 REMARK 465 VAL C 226 REMARK 465 TRP C 227 REMARK 465 PRO C 228 REMARK 465 GLY C 229 REMARK 465 VAL C 230 REMARK 465 THR C 231 REMARK 465 SER C 232 REMARK 465 MET C 233 REMARK 465 PRO C 234 REMARK 465 ASP C 235 REMARK 465 TYR C 236 REMARK 465 LYS C 237 REMARK 465 PRO C 238 REMARK 465 SER C 239 REMARK 465 PHE C 240 REMARK 465 PRO C 241 REMARK 465 LYS C 242 REMARK 465 TRP C 243 REMARK 465 ALA C 244 REMARK 465 ARG C 245 REMARK 465 GLN C 246 REMARK 465 ASP C 247 REMARK 465 PHE C 248 REMARK 465 SER C 249 REMARK 465 LYS C 250 REMARK 465 ARG C 297 REMARK 465 LEU C 298 REMARK 465 HIS D 433 REMARK 465 HIS D 434 REMARK 465 HIS D 435 REMARK 465 HIS D 436 REMARK 465 HIS D 437 REMARK 465 HIS D 438 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 346 N - CA - CB ANGL. DEV. = -13.1 DEGREES REMARK 500 PRO D 346 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 7 -51.90 -121.80 REMARK 500 LEU A 96 -49.72 75.96 REMARK 500 ASP A 127 44.65 -152.82 REMARK 500 ASP A 145 76.80 56.30 REMARK 500 PHE A 146 32.68 -98.54 REMARK 500 ARG A 157 -167.34 -108.51 REMARK 500 VAL A 164 128.83 74.59 REMARK 500 SER A 181 -157.80 -144.30 REMARK 500 VAL B 175 61.08 38.64 REMARK 500 GLN B 407 -3.79 -141.56 REMARK 500 THR C 41 -84.84 -134.32 REMARK 500 ASP C 127 44.80 -149.45 REMARK 500 ASP C 145 76.72 48.80 REMARK 500 PHE C 146 31.73 -98.69 REMARK 500 VAL C 164 129.81 70.43 REMARK 500 SER C 181 -143.47 -141.87 REMARK 500 THR C 290 -169.94 -112.15 REMARK 500 VAL D 175 68.20 38.34 REMARK 500 ASN D 431 46.30 33.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 36 0.12 SIDE CHAIN REMARK 500 ARG A 122 0.26 SIDE CHAIN REMARK 500 ARG A 150 0.25 SIDE CHAIN REMARK 500 ARG B 293 0.21 SIDE CHAIN REMARK 500 ARG C 150 0.18 SIDE CHAIN REMARK 500 ARG D 293 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9ESY A 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 9ESY B 172 432 UNP P30274 CCNA2_BOVIN 170 430 DBREF 9ESY C 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 9ESY D 172 432 UNP P30274 CCNA2_BOVIN 170 430 SEQADV 9ESY GLY A -3 UNP P24941 EXPRESSION TAG SEQADV 9ESY PRO A -2 UNP P24941 EXPRESSION TAG SEQADV 9ESY GLY A -1 UNP P24941 EXPRESSION TAG SEQADV 9ESY SER A 0 UNP P24941 EXPRESSION TAG SEQADV 9ESY GLY B 171 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS B 433 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS B 434 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS B 435 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS B 436 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS B 437 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS B 438 UNP P30274 EXPRESSION TAG SEQADV 9ESY GLY C -3 UNP P24941 EXPRESSION TAG SEQADV 9ESY PRO C -2 UNP P24941 EXPRESSION TAG SEQADV 9ESY GLY C -1 UNP P24941 EXPRESSION TAG SEQADV 9ESY SER C 0 UNP P24941 EXPRESSION TAG SEQADV 9ESY GLY D 171 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS D 433 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS D 434 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS D 435 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS D 436 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS D 437 UNP P30274 EXPRESSION TAG SEQADV 9ESY HIS D 438 UNP P30274 EXPRESSION TAG SEQRES 1 A 302 GLY PRO GLY SER MET GLU ASN PHE GLN LYS VAL GLU LYS SEQRES 2 A 302 ILE GLY GLU GLY THR TYR GLY VAL VAL TYR LYS ALA ARG SEQRES 3 A 302 ASN LYS LEU THR GLY GLU VAL VAL ALA LEU LYS LYS ILE SEQRES 4 A 302 ARG LEU ASP THR GLU THR GLU GLY VAL PRO SER THR ALA SEQRES 5 A 302 ILE ARG GLU ILE SER LEU LEU LYS GLU LEU ASN HIS PRO SEQRES 6 A 302 ASN ILE VAL LYS LEU LEU ASP VAL ILE HIS THR GLU ASN SEQRES 7 A 302 LYS LEU TYR LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU SEQRES 8 A 302 LYS LYS PHE MET ASP ALA SER ALA LEU THR GLY ILE PRO SEQRES 9 A 302 LEU PRO LEU ILE LYS SER TYR LEU PHE GLN LEU LEU GLN SEQRES 10 A 302 GLY LEU ALA PHE CYS HIS SER HIS ARG VAL LEU HIS ARG SEQRES 11 A 302 ASP LEU LYS PRO GLN ASN LEU LEU ILE ASN THR GLU GLY SEQRES 12 A 302 ALA ILE LYS LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE SEQRES 13 A 302 GLY VAL PRO VAL ARG THR TYR TPO HIS GLU VAL VAL THR SEQRES 14 A 302 LEU TRP TYR ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS SEQRES 15 A 302 TYR TYR SER THR ALA VAL ASP ILE TRP SER LEU GLY CYS SEQRES 16 A 302 ILE PHE ALA GLU MET VAL THR ARG ARG ALA LEU PHE PRO SEQRES 17 A 302 GLY ASP SER GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG SEQRES 18 A 302 THR LEU GLY THR PRO ASP GLU VAL VAL TRP PRO GLY VAL SEQRES 19 A 302 THR SER MET PRO ASP TYR LYS PRO SER PHE PRO LYS TRP SEQRES 20 A 302 ALA ARG GLN ASP PHE SER LYS VAL VAL PRO PRO LEU ASP SEQRES 21 A 302 GLU ASP GLY ARG SER LEU LEU SER GLN MET LEU HIS TYR SEQRES 22 A 302 ASP PRO ASN LYS ARG ILE SER ALA LYS ALA ALA LEU ALA SEQRES 23 A 302 HIS PRO PHE PHE GLN ASP VAL THR LYS PRO VAL PRO HIS SEQRES 24 A 302 LEU ARG LEU SEQRES 1 B 268 GLY VAL ASN GLU VAL PRO ASP TYR HIS GLU ASP ILE HIS SEQRES 2 B 268 THR TYR LEU ARG GLU MET GLU VAL LYS CYS LYS PRO LYS SEQRES 3 B 268 VAL GLY TYR MET LYS LYS GLN PRO ASP ILE THR ASN SER SEQRES 4 B 268 MET ARG ALA ILE LEU VAL ASP TRP LEU VAL GLU VAL GLY SEQRES 5 B 268 GLU GLU TYR LYS LEU GLN ASN GLU THR LEU HIS LEU ALA SEQRES 6 B 268 VAL ASN TYR ILE ASP ARG PHE LEU SER SER MET SER VAL SEQRES 7 B 268 LEU ARG GLY LYS LEU GLN LEU VAL GLY THR ALA ALA MET SEQRES 8 B 268 LEU LEU ALA SER LYS PHE GLU GLU ILE TYR PRO PRO GLU SEQRES 9 B 268 VAL ALA GLU PHE VAL TYR ILE THR ASP ASP THR TYR THR SEQRES 10 B 268 LYS LYS GLN VAL LEU ARG MET GLU HIS LEU VAL LEU LYS SEQRES 11 B 268 VAL LEU ALA PHE ASP LEU ALA ALA PRO THR ILE ASN GLN SEQRES 12 B 268 PHE LEU THR GLN TYR PHE LEU HIS GLN GLN PRO ALA ASN SEQRES 13 B 268 CYS LYS VAL GLU SER LEU ALA MET PHE LEU GLY GLU LEU SEQRES 14 B 268 SER LEU ILE ASP ALA ASP PRO TYR LEU LYS TYR LEU PRO SEQRES 15 B 268 SER VAL ILE ALA ALA ALA ALA PHE HIS LEU ALA LEU TYR SEQRES 16 B 268 THR VAL THR GLY GLN SER TRP PRO GLU SER LEU VAL GLN SEQRES 17 B 268 LYS THR GLY TYR THR LEU GLU THR LEU LYS PRO CYS LEU SEQRES 18 B 268 LEU ASP LEU HIS GLN THR TYR LEU ARG ALA PRO GLN HIS SEQRES 19 B 268 ALA GLN GLN SER ILE ARG GLU LYS TYR LYS ASN SER LYS SEQRES 20 B 268 TYR HIS GLY VAL SER LEU LEU ASN PRO PRO GLU THR LEU SEQRES 21 B 268 ASN VAL HIS HIS HIS HIS HIS HIS SEQRES 1 C 302 GLY PRO GLY SER MET GLU ASN PHE GLN LYS VAL GLU LYS SEQRES 2 C 302 ILE GLY GLU GLY THR TYR GLY VAL VAL TYR LYS ALA ARG SEQRES 3 C 302 ASN LYS LEU THR GLY GLU VAL VAL ALA LEU LYS LYS ILE SEQRES 4 C 302 ARG LEU ASP THR GLU THR GLU GLY VAL PRO SER THR ALA SEQRES 5 C 302 ILE ARG GLU ILE SER LEU LEU LYS GLU LEU ASN HIS PRO SEQRES 6 C 302 ASN ILE VAL LYS LEU LEU ASP VAL ILE HIS THR GLU ASN SEQRES 7 C 302 LYS LEU TYR LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU SEQRES 8 C 302 LYS LYS PHE MET ASP ALA SER ALA LEU THR GLY ILE PRO SEQRES 9 C 302 LEU PRO LEU ILE LYS SER TYR LEU PHE GLN LEU LEU GLN SEQRES 10 C 302 GLY LEU ALA PHE CYS HIS SER HIS ARG VAL LEU HIS ARG SEQRES 11 C 302 ASP LEU LYS PRO GLN ASN LEU LEU ILE ASN THR GLU GLY SEQRES 12 C 302 ALA ILE LYS LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE SEQRES 13 C 302 GLY VAL PRO VAL ARG THR TYR TPO HIS GLU VAL VAL THR SEQRES 14 C 302 LEU TRP TYR ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS SEQRES 15 C 302 TYR TYR SER THR ALA VAL ASP ILE TRP SER LEU GLY CYS SEQRES 16 C 302 ILE PHE ALA GLU MET VAL THR ARG ARG ALA LEU PHE PRO SEQRES 17 C 302 GLY ASP SER GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG SEQRES 18 C 302 THR LEU GLY THR PRO ASP GLU VAL VAL TRP PRO GLY VAL SEQRES 19 C 302 THR SER MET PRO ASP TYR LYS PRO SER PHE PRO LYS TRP SEQRES 20 C 302 ALA ARG GLN ASP PHE SER LYS VAL VAL PRO PRO LEU ASP SEQRES 21 C 302 GLU ASP GLY ARG SER LEU LEU SER GLN MET LEU HIS TYR SEQRES 22 C 302 ASP PRO ASN LYS ARG ILE SER ALA LYS ALA ALA LEU ALA SEQRES 23 C 302 HIS PRO PHE PHE GLN ASP VAL THR LYS PRO VAL PRO HIS SEQRES 24 C 302 LEU ARG LEU SEQRES 1 D 268 GLY VAL ASN GLU VAL PRO ASP TYR HIS GLU ASP ILE HIS SEQRES 2 D 268 THR TYR LEU ARG GLU MET GLU VAL LYS CYS LYS PRO LYS SEQRES 3 D 268 VAL GLY TYR MET LYS LYS GLN PRO ASP ILE THR ASN SER SEQRES 4 D 268 MET ARG ALA ILE LEU VAL ASP TRP LEU VAL GLU VAL GLY SEQRES 5 D 268 GLU GLU TYR LYS LEU GLN ASN GLU THR LEU HIS LEU ALA SEQRES 6 D 268 VAL ASN TYR ILE ASP ARG PHE LEU SER SER MET SER VAL SEQRES 7 D 268 LEU ARG GLY LYS LEU GLN LEU VAL GLY THR ALA ALA MET SEQRES 8 D 268 LEU LEU ALA SER LYS PHE GLU GLU ILE TYR PRO PRO GLU SEQRES 9 D 268 VAL ALA GLU PHE VAL TYR ILE THR ASP ASP THR TYR THR SEQRES 10 D 268 LYS LYS GLN VAL LEU ARG MET GLU HIS LEU VAL LEU LYS SEQRES 11 D 268 VAL LEU ALA PHE ASP LEU ALA ALA PRO THR ILE ASN GLN SEQRES 12 D 268 PHE LEU THR GLN TYR PHE LEU HIS GLN GLN PRO ALA ASN SEQRES 13 D 268 CYS LYS VAL GLU SER LEU ALA MET PHE LEU GLY GLU LEU SEQRES 14 D 268 SER LEU ILE ASP ALA ASP PRO TYR LEU LYS TYR LEU PRO SEQRES 15 D 268 SER VAL ILE ALA ALA ALA ALA PHE HIS LEU ALA LEU TYR SEQRES 16 D 268 THR VAL THR GLY GLN SER TRP PRO GLU SER LEU VAL GLN SEQRES 17 D 268 LYS THR GLY TYR THR LEU GLU THR LEU LYS PRO CYS LEU SEQRES 18 D 268 LEU ASP LEU HIS GLN THR TYR LEU ARG ALA PRO GLN HIS SEQRES 19 D 268 ALA GLN GLN SER ILE ARG GLU LYS TYR LYS ASN SER LYS SEQRES 20 D 268 TYR HIS GLY VAL SER LEU LEU ASN PRO PRO GLU THR LEU SEQRES 21 D 268 ASN VAL HIS HIS HIS HIS HIS HIS MODRES 9ESY TPO A 160 THR MODIFIED RESIDUE MODRES 9ESY TPO C 160 THR MODIFIED RESIDUE HET TPO A 160 11 HET TPO C 160 11 HET HH8 A 601 11 HET HH8 A 602 11 HET HH8 B 501 11 HET HH8 C 601 11 HETNAM TPO PHOSPHOTHREONINE HETNAM HH8 4-BROMANYL-1,8-NAPHTHYRIDINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 5 HH8 4(C8 H5 BR N2) FORMUL 9 HOH *351(H2 O) HELIX 1 AA1 SER A 0 GLU A 2 5 3 HELIX 2 AA2 PRO A 45 LEU A 58 1 14 HELIX 3 AA3 LEU A 87 SER A 94 1 8 HELIX 4 AA4 PRO A 100 HIS A 121 1 22 HELIX 5 AA5 LYS A 129 GLN A 131 5 3 HELIX 6 AA6 ASP A 145 ALA A 149 5 5 HELIX 7 AA7 THR A 165 ARG A 169 5 5 HELIX 8 AA8 ALA A 170 LEU A 175 1 6 HELIX 9 AA9 THR A 182 ARG A 199 1 18 HELIX 10 AB1 SER A 207 GLY A 220 1 14 HELIX 11 AB2 GLY A 229 MET A 233 5 5 HELIX 12 AB3 ASP A 256 LEU A 267 1 12 HELIX 13 AB4 SER A 276 LEU A 281 1 6 HELIX 14 AB5 ALA A 282 GLN A 287 5 6 HELIX 15 AB6 GLY B 171 VAL B 175 5 5 HELIX 16 AB7 TYR B 178 CYS B 193 1 16 HELIX 17 AB8 THR B 207 TYR B 225 1 19 HELIX 18 AB9 GLN B 228 MET B 246 1 19 HELIX 19 AC1 LEU B 249 GLY B 251 5 3 HELIX 20 AC2 LYS B 252 GLU B 269 1 18 HELIX 21 AC3 GLU B 274 THR B 282 1 9 HELIX 22 AC4 THR B 287 LEU B 302 1 16 HELIX 23 AC5 THR B 310 LEU B 320 1 11 HELIX 24 AC6 ASN B 326 ILE B 342 1 17 HELIX 25 AC7 ASP B 343 LEU B 348 1 6 HELIX 26 AC8 LEU B 351 GLY B 369 1 19 HELIX 27 AC9 PRO B 373 GLY B 381 1 9 HELIX 28 AD1 THR B 383 ALA B 401 1 19 HELIX 29 AD2 GLN B 407 TYR B 413 1 7 HELIX 30 AD3 LYS B 414 HIS B 419 5 6 HELIX 31 AD4 GLY B 420 LEU B 424 5 5 HELIX 32 AD5 PRO C 45 LEU C 58 1 14 HELIX 33 AD6 LEU C 87 SER C 94 1 8 HELIX 34 AD7 PRO C 100 HIS C 121 1 22 HELIX 35 AD8 LYS C 129 GLN C 131 5 3 HELIX 36 AD9 THR C 165 ARG C 169 5 5 HELIX 37 AE1 ALA C 170 LEU C 175 1 6 HELIX 38 AE2 THR C 182 ARG C 199 1 18 HELIX 39 AE3 SER C 207 LEU C 219 1 13 HELIX 40 AE4 ASP C 256 LEU C 267 1 12 HELIX 41 AE5 SER C 276 ALA C 282 1 7 HELIX 42 AE6 HIS C 283 GLN C 287 5 5 HELIX 43 AE7 GLY D 171 VAL D 175 5 5 HELIX 44 AE8 TYR D 178 CYS D 193 1 16 HELIX 45 AE9 GLY D 198 GLN D 203 5 6 HELIX 46 AF1 THR D 207 TYR D 225 1 19 HELIX 47 AF2 GLN D 228 SER D 244 1 17 HELIX 48 AF3 LEU D 249 GLY D 251 5 3 HELIX 49 AF4 LYS D 252 GLU D 269 1 18 HELIX 50 AF5 GLU D 274 ILE D 281 1 8 HELIX 51 AF6 THR D 287 ALA D 303 1 17 HELIX 52 AF7 THR D 310 PHE D 319 1 10 HELIX 53 AF8 LEU D 320 GLN D 322 5 3 HELIX 54 AF9 ASN D 326 ASP D 343 1 18 HELIX 55 AG1 ASP D 343 LEU D 348 1 6 HELIX 56 AG2 LEU D 351 THR D 368 1 18 HELIX 57 AG3 PRO D 373 GLY D 381 1 9 HELIX 58 AG4 LEU D 387 ALA D 401 1 15 HELIX 59 AG5 PRO D 402 HIS D 404 5 3 HELIX 60 AG6 GLN D 407 TYR D 413 1 7 HELIX 61 AG7 LYS D 414 HIS D 419 5 6 SHEET 1 AA1 5 PHE A 4 GLU A 12 0 SHEET 2 AA1 5 VAL A 17 ASN A 23 -1 O VAL A 18 N GLY A 11 SHEET 3 AA1 5 VAL A 29 ARG A 36 -1 O VAL A 30 N ALA A 21 SHEET 4 AA1 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 AA1 5 LEU A 66 HIS A 71 -1 N LEU A 67 O VAL A 79 SHEET 1 AA2 3 GLN A 85 ASP A 86 0 SHEET 2 AA2 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 AA2 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 SHEET 1 AA3 2 VAL A 123 LEU A 124 0 SHEET 2 AA3 2 ARG A 150 ALA A 151 -1 O ARG A 150 N LEU A 124 SHEET 1 AA4 5 PHE C 4 GLU C 12 0 SHEET 2 AA4 5 VAL C 17 ASN C 23 -1 O LYS C 20 N VAL C 7 SHEET 3 AA4 5 VAL C 29 ARG C 36 -1 O VAL C 30 N ALA C 21 SHEET 4 AA4 5 LYS C 75 GLU C 81 -1 O LEU C 76 N ILE C 35 SHEET 5 AA4 5 LEU C 66 HIS C 71 -1 N LEU C 67 O VAL C 79 SHEET 1 AA5 3 GLN C 85 ASP C 86 0 SHEET 2 AA5 3 LEU C 133 ILE C 135 -1 O ILE C 135 N GLN C 85 SHEET 3 AA5 3 ILE C 141 LEU C 143 -1 O LYS C 142 N LEU C 134 SHEET 1 AA6 2 VAL C 123 LEU C 124 0 SHEET 2 AA6 2 ARG C 150 ALA C 151 -1 O ARG C 150 N LEU C 124 LINK C TYR A 159 N TPO A 160 1555 1555 1.33 LINK C TPO A 160 N HIS A 161 1555 1555 1.34 LINK C TYR C 159 N TPO C 160 1555 1555 1.34 LINK C TPO C 160 N HIS C 161 1555 1555 1.34 CISPEP 1 VAL A 154 PRO A 155 0 -10.85 CISPEP 2 GLN B 323 PRO B 324 0 -2.63 CISPEP 3 ASP B 345 PRO B 346 0 14.44 CISPEP 4 VAL C 154 PRO C 155 0 -2.13 CISPEP 5 GLN D 323 PRO D 324 0 -4.98 CISPEP 6 ASP D 345 PRO D 346 0 11.18 CRYST1 74.073 133.635 148.056 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006754 0.00000