HEADER HYDROLASE 27-MAR-24 9EUM TITLE NMR STRUCTURE OF THE STAPHYLOCOCCUS AUREUS BACTERIOPHAGE PHI812 HUB TITLE 2 PROTEIN - LYTIC CLEAVER (CHAP) DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE C51 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PHAGE 812; SOURCE 3 ORGANISM_TAXID: 307898; SOURCE 4 GENE: 812_113, 812A_113, 812F1_113, K1/420_113, K1_113; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHAP, PHI812, PEPTIDASE, PEPTIDOGLYCAN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.BINOVSKY,K.TRIPSIANES,J.NOVACEK,M.BENESIK,P.PLEVKA REVDAT 1 09-APR-25 9EUM 0 JRNL AUTH J.BINOVSKY,K.TRIPSIANES,J.NOVACEK,M.BENESIK,P.PLEVKA JRNL TITL CELL ATTACHMENT AND TAIL CONTRACTION OF S. AUREUS PHAGE JRNL TITL 2 PHI812 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292136216. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.8 MM [U-99% 13C; U-99% 15N] REMARK 210 CHAP DOMAIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D HC(CC TOCSY(CO))NH; 4D REMARK 210 13C,15N EDITED HMQC-NOESY-HSQC; REMARK 210 4D 13C,13C EDITED HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : 4D-CHAINS, CYANA, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 24 HZ2 LYS A 162 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 -60.59 -174.70 REMARK 500 1 SER A 5 -34.21 -148.72 REMARK 500 1 LEU A 23 -78.47 70.98 REMARK 500 1 ASP A 24 -37.62 162.03 REMARK 500 1 PRO A 34 158.72 -46.43 REMARK 500 1 TYR A 48 102.37 -58.70 REMARK 500 1 HIS A 131 -89.49 -99.26 REMARK 500 1 TYR A 133 -55.55 -131.42 REMARK 500 1 ASN A 137 -37.51 77.32 REMARK 500 2 SER A 14 -18.93 -147.52 REMARK 500 2 LEU A 23 -76.81 -48.14 REMARK 500 2 ASP A 24 -70.40 -147.57 REMARK 500 2 PRO A 43 82.61 -65.63 REMARK 500 2 HIS A 47 -168.43 -103.45 REMARK 500 2 ASP A 121 -144.95 67.16 REMARK 500 3 GLU A 2 59.81 -93.20 REMARK 500 3 PRO A 43 34.93 -90.23 REMARK 500 3 TYR A 48 100.05 -58.99 REMARK 500 3 ASP A 121 -139.11 62.20 REMARK 500 4 SER A 12 14.31 -143.01 REMARK 500 4 LEU A 23 -62.16 -174.43 REMARK 500 4 ASP A 24 -56.01 174.59 REMARK 500 4 PRO A 43 32.04 -70.84 REMARK 500 4 ASP A 121 -150.22 63.87 REMARK 500 4 ASN A 163 -178.53 62.48 REMARK 500 5 GLU A 2 115.66 69.01 REMARK 500 5 ASP A 24 -82.79 -41.33 REMARK 500 5 ASP A 121 -54.86 72.36 REMARK 500 5 ALA A 134 37.24 -174.34 REMARK 500 5 ASN A 137 80.28 57.63 REMARK 500 6 LEU A 23 -75.83 -75.71 REMARK 500 6 ASP A 24 -66.65 -156.90 REMARK 500 6 TYR A 50 87.67 -151.77 REMARK 500 6 ASP A 121 -54.18 72.59 REMARK 500 6 ASN A 137 -8.67 76.10 REMARK 500 6 LYS A 160 -162.84 -79.44 REMARK 500 6 LYS A 162 82.33 -65.81 REMARK 500 6 ALA A 173 147.60 72.81 REMARK 500 7 PRO A 43 25.03 -66.33 REMARK 500 7 TYR A 48 100.94 -57.36 REMARK 500 7 ASP A 121 -141.11 68.36 REMARK 500 7 TYR A 133 -76.42 -153.85 REMARK 500 7 ALA A 134 6.50 -150.94 REMARK 500 7 ASN A 137 -15.90 72.86 REMARK 500 7 LYS A 160 -151.67 -95.58 REMARK 500 7 SER A 164 83.03 62.20 REMARK 500 7 ALA A 173 148.55 69.77 REMARK 500 8 ARG A 46 -61.14 -24.32 REMARK 500 8 SER A 165 19.06 -148.83 REMARK 500 8 SER A 166 154.03 61.31 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A 59 0.07 SIDE CHAIN REMARK 500 7 ARG A 101 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34912 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE STAPHYLOCOCCUS AUREUS BACTERIOPHAGE PHI812 HUB REMARK 900 PROTEIN - LYTIC CLEAVER (CHAP) DOMAIN DBREF1 9EUM A 3 161 UNP A0A0U1X189_9CAUD DBREF2 9EUM A A0A0U1X189 650 808 SEQADV 9EUM MET A 1 UNP A0A0U1X18 INITIATING METHIONINE SEQADV 9EUM GLU A 2 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM LYS A 162 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM ASN A 163 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM SER A 164 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM SER A 165 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM SER A 166 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM VAL A 167 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM ASP A 168 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM LYS A 169 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM LEU A 170 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM ALA A 171 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM ALA A 172 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM ALA A 173 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM LEU A 174 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM GLU A 175 UNP A0A0U1X18 EXPRESSION TAG SEQADV 9EUM HIS A 176 UNP A0A0U1X18 EXPRESSION TAG SEQRES 1 A 176 MET GLU GLN SER SER GLY ASP LYS ASP GLY GLY SER ASP SEQRES 2 A 176 SER GLY GLY ALA GLN ASP GLY GLY SER LEU ASP SER LEU SEQRES 3 A 176 LYS LYS TYR ASN GLY LYS LEU PRO LYS HIS ASP PRO SER SEQRES 4 A 176 PHE VAL GLN PRO GLY ASN ARG HIS TYR LYS TYR GLN CYS SEQRES 5 A 176 THR TRP TYR ALA TYR ASN ARG ARG GLY GLN LEU GLY ILE SEQRES 6 A 176 PRO VAL PRO LEU TRP GLY ASP ALA ALA ASP TRP ILE GLY SEQRES 7 A 176 GLY ALA LYS GLY ALA GLY TYR GLY VAL GLY ARG THR PRO SEQRES 8 A 176 LYS GLN GLY ALA CYS VAL ILE TRP GLN ARG GLY VAL GLN SEQRES 9 A 176 GLY GLY SER PRO GLN TYR GLY HIS VAL ALA PHE VAL GLU SEQRES 10 A 176 LYS VAL LEU ASP GLY GLY LYS LYS ILE PHE ILE SER GLU SEQRES 11 A 176 HIS ASN TYR ALA THR PRO ASN GLY TYR GLY THR ARG THR SEQRES 12 A 176 ILE ASP MET SER SER ALA ILE GLY LYS ASN ALA GLN PHE SEQRES 13 A 176 ILE TYR ASP LYS LYS LYS ASN SER SER SER VAL ASP LYS SEQRES 14 A 176 LEU ALA ALA ALA LEU GLU HIS HELIX 1 AA1 GLY A 10 GLY A 15 5 6 HELIX 2 AA2 SER A 25 ASN A 30 5 6 HELIX 3 AA3 PRO A 43 HIS A 47 5 5 HELIX 4 AA4 GLN A 51 LEU A 63 1 13 HELIX 5 AA5 ASP A 72 ALA A 74 5 3 HELIX 6 AA6 ASP A 75 GLY A 84 1 10 HELIX 7 AA7 SER A 148 ALA A 154 1 7 HELIX 8 AA8 ASP A 168 ALA A 173 1 6 SHEET 1 AA1 6 GLY A 86 GLY A 88 0 SHEET 2 AA1 6 GLN A 155 TYR A 158 -1 O TYR A 158 N GLY A 86 SHEET 3 AA1 6 CYS A 96 TRP A 99 -1 N ILE A 98 O GLN A 155 SHEET 4 AA1 6 HIS A 112 LEU A 120 -1 O HIS A 112 N TRP A 99 SHEET 5 AA1 6 LYS A 125 SER A 129 -1 O PHE A 127 N GLU A 117 SHEET 6 AA1 6 ARG A 142 ASP A 145 -1 O ARG A 142 N ILE A 128 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 170 0 0 8 6 0 0 6 1334 1 0 14 END