HEADER CELL INVASION 31-MAR-24 9EVO TITLE PLASMODIUM FALCIPARUM APICAL MEMBRANE ANTIGEN 3D7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEMBRANE ANTIGEN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MEROZOITE SURFACE ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: MUTATIONS FOR POTENTIAL N-GLYCOSYLATION SITES: T164A, COMPND 7 T288A, S373A, S423A, S424A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF3D7_1133400; SOURCE 6 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS PLASMODIUM FALCIPARUM, ANTIGEN, VACCINE CANDIDATE, MALARIA, CELL KEYWDS 2 INVASION EXPDTA X-RAY DIFFRACTION AUTHOR G.A.BENTLEY,F.A.SAUL,B.VULLIEZ-LE NORMAND REVDAT 1 16-OCT-24 9EVO 0 JRNL AUTH F.A.SAUL,B.VULLIEZ-LE NORMAND,A.BOES,H.SPIEGEL,C.H.M.KOCKEN, JRNL AUTH 2 B.W.FABER,G.A.BENTLEY JRNL TITL CONFORMATIONAL VARIABILITY IN THE D2 LOOP OF PLASMODIUM JRNL TITL 2 APICAL MEMBRANE ANTIGEN 1. JRNL REF J STRUCT BIOL X V. 10 00110 2024 JRNL REFN ESSN 2590-1524 JRNL PMID 39324028 JRNL DOI 10.1016/J.YJSBX.2024.100110 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 35400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 1.48000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : -1.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4913 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4417 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6676 ; 1.729 ; 1.670 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10213 ; 0.727 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 7.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 7.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 779 ;13.346 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 701 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5760 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1104 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2430 ; 2.305 ; 2.826 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2430 ; 2.304 ; 2.826 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3024 ; 3.719 ; 5.079 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3025 ; 3.718 ; 5.080 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2483 ; 2.439 ; 3.031 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2484 ; 2.439 ; 3.033 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3652 ; 4.054 ; 5.485 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5327 ; 6.037 ;28.030 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5269 ; 5.992 ;27.890 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9EVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292136816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF PFAMA1-3D7 WERE OBTAINED REMARK 280 BY MIXING 1.2 MICRO-L OF PROTEIN AND 1.2 MICRO-L OF RESERVOIR REMARK 280 BUFFER CONTAINING 12% PEG 3350, 0.1M HEPES PH 7 AND 10% PROPANOL- REMARK 280 2. THE FINAL PROTEIN CONCENTRATION WAS 3.5 MG/ML. BEFORE REMARK 280 MOUNTING, 1 MICRO-L OF A 20MM SOLUTION OF A SMALL MOLECULE REMARK 280 NCGC00015280 (DEMONSTRATED AS INHIBITING THE AMA1-RON2 REMARK 280 INTERACTION AND REFERENCED AS B43 IN THE PDB), WAS DISSOLVED IN REMARK 280 DMSO AND HALF DILUTED WITH THE RESERVOIR BUFFER, THEN ADDED TO REMARK 280 THE DROP CONTAINING THE CRYSTALS. CRYO-PROTECTING BUFFER FOR THE REMARK 280 PFAMA1-3D7 CRYSTALS CONSISTED OF 90% OF RESERVOIR BUFFER REMARK 280 CONTAINING 20% PEG 3350, 0.1M HEPES PH 7 AND 10% PROPANOL-2 REMARK 280 SUPPLEMENTED WITH 10% GLYCEROL, AND 10% OF A 20MM SOLUTION OF REMARK 280 B43., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 95 REMARK 465 ALA A 96 REMARK 465 ILE A 97 REMARK 465 GLU A 98 REMARK 465 ILE A 99 REMARK 465 VAL A 100 REMARK 465 GLU A 101 REMARK 465 ARG A 102 REMARK 465 SER A 103 REMARK 465 ASN A 104 REMARK 465 TYR A 105 REMARK 465 MET A 106 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 SER A 268 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 ASN A 271 REMARK 465 LEU A 380 REMARK 465 PRO A 381 REMARK 465 THR A 382 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 PHE A 385 REMARK 465 LYS A 386 REMARK 465 ALA A 443 REMARK 465 ALA A 444 REMARK 465 ALA A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 LYS A 454 REMARK 465 ASP A 455 REMARK 465 GLU A 456 REMARK 465 LEU A 457 REMARK 465 MET B 95 REMARK 465 ALA B 96 REMARK 465 ILE B 97 REMARK 465 GLU B 98 REMARK 465 ILE B 99 REMARK 465 VAL B 100 REMARK 465 GLU B 101 REMARK 465 ARG B 102 REMARK 465 SER B 103 REMARK 465 ASN B 104 REMARK 465 TYR B 105 REMARK 465 MET B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 172 REMARK 465 ASN B 173 REMARK 465 LYS B 230 REMARK 465 ASN B 231 REMARK 465 LYS B 265 REMARK 465 ASP B 266 REMARK 465 GLU B 267 REMARK 465 SER B 268 REMARK 465 LYS B 269 REMARK 465 ARG B 270 REMARK 465 ASN B 271 REMARK 465 SER B 272 REMARK 465 GLU B 354 REMARK 465 GLN B 355 REMARK 465 HIS B 356 REMARK 465 LEU B 357 REMARK 465 THR B 358 REMARK 465 ASP B 359 REMARK 465 TYR B 360 REMARK 465 GLU B 361 REMARK 465 LYS B 362 REMARK 465 ILE B 363 REMARK 465 LYS B 364 REMARK 465 GLU B 365 REMARK 465 GLY B 366 REMARK 465 PHE B 367 REMARK 465 LYS B 368 REMARK 465 ASN B 369 REMARK 465 LYS B 370 REMARK 465 ASN B 371 REMARK 465 ALA B 372 REMARK 465 ALA B 373 REMARK 465 MET B 374 REMARK 465 ILE B 375 REMARK 465 LYS B 376 REMARK 465 SER B 377 REMARK 465 ALA B 378 REMARK 465 PHE B 379 REMARK 465 LEU B 380 REMARK 465 PRO B 381 REMARK 465 THR B 382 REMARK 465 GLY B 383 REMARK 465 ALA B 384 REMARK 465 PHE B 385 REMARK 465 LYS B 386 REMARK 465 ALA B 387 REMARK 465 ASN B 440 REMARK 465 PHE B 441 REMARK 465 PRO B 442 REMARK 465 ALA B 443 REMARK 465 ALA B 444 REMARK 465 ALA B 445 REMARK 465 HIS B 446 REMARK 465 HIS B 447 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 SER B 452 REMARK 465 GLU B 453 REMARK 465 LYS B 454 REMARK 465 ASP B 455 REMARK 465 GLU B 456 REMARK 465 LEU B 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 GLU A 187 CD OE1 OE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 262 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 264 CG OD1 ND2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 ASP A 317 CG OD1 OD2 REMARK 470 GLN A 355 CD OE1 NE2 REMARK 470 PHE A 367 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 371 CG OD1 ND2 REMARK 470 MET A 374 CG SD CE REMARK 470 PHE A 379 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 389 CD NE CZ NH1 NH2 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 GLN B 174 CG CD OE1 NE2 REMARK 470 TYR B 175 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 177 CD CE NZ REMARK 470 ARG B 261 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 262 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 264 CG OD1 ND2 REMARK 470 MET B 273 CG SD CE REMARK 470 GLN B 352 CG CD OE1 NE2 REMARK 470 ARG B 389 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 131 53.13 -148.17 REMARK 500 ASN A 160 -34.11 77.57 REMARK 500 ASN A 258 51.17 -154.32 REMARK 500 LYS A 280 76.48 -105.02 REMARK 500 ARG A 304 -58.82 -139.91 REMARK 500 SER A 377 69.83 61.28 REMARK 500 ILE A 435 -48.04 -130.30 REMARK 500 LEU B 131 49.11 -143.75 REMARK 500 SER B 146 15.16 -141.36 REMARK 500 ASN B 258 31.62 -147.15 REMARK 500 CYS B 263 64.66 -117.03 REMARK 500 PHE B 274 82.60 -164.28 REMARK 500 ASN B 297 30.20 -99.21 REMARK 500 ARG B 304 -63.33 -147.35 REMARK 500 ILE B 435 -51.31 -132.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 219 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9EVO A 97 442 UNP Q7KQK5 Q7KQK5_PLAF7 97 442 DBREF 9EVO B 97 442 UNP Q7KQK5 Q7KQK5_PLAF7 97 442 SEQADV 9EVO MET A 95 UNP Q7KQK5 INITIATING METHIONINE SEQADV 9EVO ALA A 96 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ALA A 164 UNP Q7KQK5 THR 164 ENGINEERED MUTATION SEQADV 9EVO ALA A 288 UNP Q7KQK5 THR 288 ENGINEERED MUTATION SEQADV 9EVO ALA A 373 UNP Q7KQK5 SER 373 ENGINEERED MUTATION SEQADV 9EVO ALA A 423 UNP Q7KQK5 SER 423 ENGINEERED MUTATION SEQADV 9EVO ALA A 424 UNP Q7KQK5 SER 424 CONFLICT SEQADV 9EVO ALA A 443 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ALA A 444 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ALA A 445 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS A 446 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS A 447 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS A 448 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS A 449 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS A 450 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS A 451 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO SER A 452 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO GLU A 453 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO LYS A 454 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ASP A 455 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO GLU A 456 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO LEU A 457 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO MET B 95 UNP Q7KQK5 INITIATING METHIONINE SEQADV 9EVO ALA B 96 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ALA B 164 UNP Q7KQK5 THR 164 ENGINEERED MUTATION SEQADV 9EVO ALA B 288 UNP Q7KQK5 THR 288 ENGINEERED MUTATION SEQADV 9EVO ALA B 373 UNP Q7KQK5 SER 373 ENGINEERED MUTATION SEQADV 9EVO ALA B 423 UNP Q7KQK5 SER 423 ENGINEERED MUTATION SEQADV 9EVO ALA B 424 UNP Q7KQK5 SER 424 CONFLICT SEQADV 9EVO ALA B 443 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ALA B 444 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ALA B 445 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS B 446 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS B 447 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS B 448 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS B 449 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS B 450 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO HIS B 451 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO SER B 452 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO GLU B 453 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO LYS B 454 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO ASP B 455 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO GLU B 456 UNP Q7KQK5 EXPRESSION TAG SEQADV 9EVO LEU B 457 UNP Q7KQK5 EXPRESSION TAG SEQRES 1 A 363 MET ALA ILE GLU ILE VAL GLU ARG SER ASN TYR MET GLY SEQRES 2 A 363 ASN PRO TRP THR GLU TYR MET ALA LYS TYR ASP ILE GLU SEQRES 3 A 363 GLU VAL HIS GLY SER GLY ILE ARG VAL ASP LEU GLY GLU SEQRES 4 A 363 ASP ALA GLU VAL ALA GLY THR GLN TYR ARG LEU PRO SER SEQRES 5 A 363 GLY LYS CYS PRO VAL PHE GLY LYS GLY ILE ILE ILE GLU SEQRES 6 A 363 ASN SER ASN THR ALA PHE LEU THR PRO VAL ALA THR GLY SEQRES 7 A 363 ASN GLN TYR LEU LYS ASP GLY GLY PHE ALA PHE PRO PRO SEQRES 8 A 363 THR GLU PRO LEU MET SER PRO MET THR LEU ASP GLU MET SEQRES 9 A 363 ARG HIS PHE TYR LYS ASP ASN LYS TYR VAL LYS ASN LEU SEQRES 10 A 363 ASP GLU LEU THR LEU CYS SER ARG HIS ALA GLY ASN MET SEQRES 11 A 363 ILE PRO ASP ASN ASP LYS ASN SER ASN TYR LYS TYR PRO SEQRES 12 A 363 ALA VAL TYR ASP ASP LYS ASP LYS LYS CYS HIS ILE LEU SEQRES 13 A 363 TYR ILE ALA ALA GLN GLU ASN ASN GLY PRO ARG TYR CYS SEQRES 14 A 363 ASN LYS ASP GLU SER LYS ARG ASN SER MET PHE CYS PHE SEQRES 15 A 363 ARG PRO ALA LYS ASP ILE SER PHE GLN ASN TYR ALA TYR SEQRES 16 A 363 LEU SER LYS ASN VAL VAL ASP ASN TRP GLU LYS VAL CYS SEQRES 17 A 363 PRO ARG LYS ASN LEU GLN ASN ALA LYS PHE GLY LEU TRP SEQRES 18 A 363 VAL ASP GLY ASN CYS GLU ASP ILE PRO HIS VAL ASN GLU SEQRES 19 A 363 PHE PRO ALA ILE ASP LEU PHE GLU CYS ASN LYS LEU VAL SEQRES 20 A 363 PHE GLU LEU SER ALA SER ASP GLN PRO LYS GLN TYR GLU SEQRES 21 A 363 GLN HIS LEU THR ASP TYR GLU LYS ILE LYS GLU GLY PHE SEQRES 22 A 363 LYS ASN LYS ASN ALA ALA MET ILE LYS SER ALA PHE LEU SEQRES 23 A 363 PRO THR GLY ALA PHE LYS ALA ASP ARG TYR LYS SER HIS SEQRES 24 A 363 GLY LYS GLY TYR ASN TRP GLY ASN TYR ASN THR GLU THR SEQRES 25 A 363 GLN LYS CYS GLU ILE PHE ASN VAL LYS PRO THR CYS LEU SEQRES 26 A 363 ILE ASN ASN ALA ALA TYR ILE ALA THR THR ALA LEU SER SEQRES 27 A 363 HIS PRO ILE GLU VAL GLU ASN ASN PHE PRO ALA ALA ALA SEQRES 28 A 363 HIS HIS HIS HIS HIS HIS SER GLU LYS ASP GLU LEU SEQRES 1 B 363 MET ALA ILE GLU ILE VAL GLU ARG SER ASN TYR MET GLY SEQRES 2 B 363 ASN PRO TRP THR GLU TYR MET ALA LYS TYR ASP ILE GLU SEQRES 3 B 363 GLU VAL HIS GLY SER GLY ILE ARG VAL ASP LEU GLY GLU SEQRES 4 B 363 ASP ALA GLU VAL ALA GLY THR GLN TYR ARG LEU PRO SER SEQRES 5 B 363 GLY LYS CYS PRO VAL PHE GLY LYS GLY ILE ILE ILE GLU SEQRES 6 B 363 ASN SER ASN THR ALA PHE LEU THR PRO VAL ALA THR GLY SEQRES 7 B 363 ASN GLN TYR LEU LYS ASP GLY GLY PHE ALA PHE PRO PRO SEQRES 8 B 363 THR GLU PRO LEU MET SER PRO MET THR LEU ASP GLU MET SEQRES 9 B 363 ARG HIS PHE TYR LYS ASP ASN LYS TYR VAL LYS ASN LEU SEQRES 10 B 363 ASP GLU LEU THR LEU CYS SER ARG HIS ALA GLY ASN MET SEQRES 11 B 363 ILE PRO ASP ASN ASP LYS ASN SER ASN TYR LYS TYR PRO SEQRES 12 B 363 ALA VAL TYR ASP ASP LYS ASP LYS LYS CYS HIS ILE LEU SEQRES 13 B 363 TYR ILE ALA ALA GLN GLU ASN ASN GLY PRO ARG TYR CYS SEQRES 14 B 363 ASN LYS ASP GLU SER LYS ARG ASN SER MET PHE CYS PHE SEQRES 15 B 363 ARG PRO ALA LYS ASP ILE SER PHE GLN ASN TYR ALA TYR SEQRES 16 B 363 LEU SER LYS ASN VAL VAL ASP ASN TRP GLU LYS VAL CYS SEQRES 17 B 363 PRO ARG LYS ASN LEU GLN ASN ALA LYS PHE GLY LEU TRP SEQRES 18 B 363 VAL ASP GLY ASN CYS GLU ASP ILE PRO HIS VAL ASN GLU SEQRES 19 B 363 PHE PRO ALA ILE ASP LEU PHE GLU CYS ASN LYS LEU VAL SEQRES 20 B 363 PHE GLU LEU SER ALA SER ASP GLN PRO LYS GLN TYR GLU SEQRES 21 B 363 GLN HIS LEU THR ASP TYR GLU LYS ILE LYS GLU GLY PHE SEQRES 22 B 363 LYS ASN LYS ASN ALA ALA MET ILE LYS SER ALA PHE LEU SEQRES 23 B 363 PRO THR GLY ALA PHE LYS ALA ASP ARG TYR LYS SER HIS SEQRES 24 B 363 GLY LYS GLY TYR ASN TRP GLY ASN TYR ASN THR GLU THR SEQRES 25 B 363 GLN LYS CYS GLU ILE PHE ASN VAL LYS PRO THR CYS LEU SEQRES 26 B 363 ILE ASN ASN ALA ALA TYR ILE ALA THR THR ALA LEU SER SEQRES 27 B 363 HIS PRO ILE GLU VAL GLU ASN ASN PHE PRO ALA ALA ALA SEQRES 28 B 363 HIS HIS HIS HIS HIS HIS SER GLU LYS ASP GLU LEU FORMUL 3 HOH *322(H2 O) HELIX 1 AA1 TRP A 110 ALA A 115 1 6 HELIX 2 AA2 ASP A 118 HIS A 123 1 6 HELIX 3 AA3 TYR A 175 GLY A 179 5 5 HELIX 4 AA4 LEU A 195 TYR A 202 1 8 HELIX 5 AA5 ASP A 212 ASN A 223 1 12 HELIX 6 AA6 ASP A 281 GLN A 285 5 5 HELIX 7 AA7 ASN A 297 CYS A 302 1 6 HELIX 8 AA8 ASP A 333 SER A 345 1 13 HELIX 9 AA9 THR A 358 GLU A 365 1 8 HELIX 10 AB1 LYS A 368 SER A 377 1 10 HELIX 11 AB2 TRP B 110 ALA B 115 1 6 HELIX 12 AB3 ASP B 118 HIS B 123 1 6 HELIX 13 AB4 LEU B 195 TYR B 202 1 8 HELIX 14 AB5 ASP B 212 GLY B 222 1 11 HELIX 15 AB6 ASP B 281 GLN B 285 5 5 HELIX 16 AB7 ASN B 297 CYS B 302 1 6 HELIX 17 AB8 ASP B 333 SER B 345 1 13 SHEET 1 AA1 2 GLU A 133 GLU A 136 0 SHEET 2 AA1 2 GLN A 141 LEU A 144 -1 O LEU A 144 N GLU A 133 SHEET 1 AA2 5 VAL A 151 PHE A 152 0 SHEET 2 AA2 5 TYR A 287 LEU A 290 -1 O TYR A 289 N VAL A 151 SHEET 3 AA2 5 ALA A 238 ASP A 241 -1 N ALA A 238 O LEU A 290 SHEET 4 AA2 5 LYS A 246 ILE A 249 -1 O HIS A 248 N VAL A 239 SHEET 5 AA2 5 MET A 193 THR A 194 -1 N MET A 193 O CYS A 247 SHEET 1 AA3 2 GLY A 155 GLU A 159 0 SHEET 2 AA3 2 CYS A 275 ALA A 279 -1 O ARG A 277 N ILE A 157 SHEET 1 AA4 6 ASN A 319 ASP A 322 0 SHEET 2 AA4 6 ASN A 306 VAL A 316 -1 N VAL A 316 O ASN A 319 SHEET 3 AA4 6 CYS A 418 THR A 429 -1 O ILE A 420 N LYS A 311 SHEET 4 AA4 6 TRP A 399 ASN A 403 -1 N TYR A 402 O ILE A 426 SHEET 5 AA4 6 LYS A 408 PHE A 412 -1 O LYS A 408 N ASN A 403 SHEET 6 AA4 6 ASN A 327 PRO A 330 -1 N PHE A 329 O CYS A 409 SHEET 1 AA5 3 ASN A 319 ASP A 322 0 SHEET 2 AA5 3 ASN A 306 VAL A 316 -1 N VAL A 316 O ASN A 319 SHEET 3 AA5 3 VAL A 437 GLU A 438 1 O GLU A 438 N ASN A 306 SHEET 1 AA6 2 GLU B 133 GLU B 136 0 SHEET 2 AA6 2 GLN B 141 LEU B 144 -1 O LEU B 144 N GLU B 133 SHEET 1 AA7 5 VAL B 151 PHE B 152 0 SHEET 2 AA7 5 TYR B 287 LEU B 290 -1 O TYR B 289 N VAL B 151 SHEET 3 AA7 5 ALA B 238 ASP B 241 -1 N ALA B 238 O LEU B 290 SHEET 4 AA7 5 LYS B 246 ILE B 249 -1 O HIS B 248 N VAL B 239 SHEET 5 AA7 5 MET B 193 THR B 194 -1 N MET B 193 O CYS B 247 SHEET 1 AA8 2 GLY B 155 ILE B 158 0 SHEET 2 AA8 2 PHE B 276 ALA B 279 -1 O ARG B 277 N ILE B 157 SHEET 1 AA9 6 ASN B 319 ASP B 322 0 SHEET 2 AA9 6 ASN B 306 VAL B 316 -1 N LEU B 314 O GLU B 321 SHEET 3 AA9 6 CYS B 418 THR B 429 -1 O ILE B 420 N LYS B 311 SHEET 4 AA9 6 TRP B 399 ASN B 403 -1 N TYR B 402 O ILE B 426 SHEET 5 AA9 6 LYS B 408 PHE B 412 -1 O LYS B 408 N ASN B 403 SHEET 6 AA9 6 ASN B 327 PRO B 330 -1 N PHE B 329 O CYS B 409 SHEET 1 AB1 3 ASN B 319 ASP B 322 0 SHEET 2 AB1 3 ASN B 306 VAL B 316 -1 N LEU B 314 O GLU B 321 SHEET 3 AB1 3 VAL B 437 GLU B 438 1 O GLU B 438 N GLN B 308 SSBOND 1 CYS A 149 CYS A 302 1555 1555 2.04 SSBOND 2 CYS A 217 CYS A 247 1555 1555 2.10 SSBOND 3 CYS A 263 CYS A 275 1555 1555 2.00 SSBOND 4 CYS A 320 CYS A 418 1555 1555 1.99 SSBOND 5 CYS A 337 CYS A 409 1555 1555 2.09 SSBOND 6 CYS B 149 CYS B 302 1555 1555 2.06 SSBOND 7 CYS B 217 CYS B 247 1555 1555 2.04 SSBOND 8 CYS B 263 CYS B 275 1555 1555 2.02 SSBOND 9 CYS B 320 CYS B 418 1555 1555 2.00 SSBOND 10 CYS B 337 CYS B 409 1555 1555 2.09 CISPEP 1 GLU A 187 PRO A 188 0 -8.41 CISPEP 2 SER A 191 PRO A 192 0 -7.60 CISPEP 3 GLU B 187 PRO B 188 0 -6.89 CISPEP 4 SER B 191 PRO B 192 0 -9.96 CRYST1 38.230 62.060 71.500 89.13 89.90 83.92 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026157 -0.002786 -0.000004 0.00000 SCALE2 0.000000 0.016205 -0.000244 0.00000 SCALE3 0.000000 0.000000 0.013988 0.00000 CONECT 328 1479 CONECT 854 1093 CONECT 1093 854 CONECT 1210 1251 CONECT 1251 1210 CONECT 1479 328 CONECT 1620 2340 CONECT 1759 2268 CONECT 2268 1759 CONECT 2340 1620 CONECT 2855 3960 CONECT 3362 3588 CONECT 3588 3362 CONECT 3705 3732 CONECT 3732 3705 CONECT 3960 2855 CONECT 4104 4623 CONECT 4243 4551 CONECT 4551 4243 CONECT 4623 4104 MASTER 444 0 0 17 36 0 0 6 5100 2 20 56 END