HEADER VIRAL PROTEIN 11-APR-24 9EZB TITLE SARS-COV-2 NUCLEOCAPSID N-TERMINAL DOMAIN (NTD) MUTANT P67S COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, NUCELOCAPSID, N-TERMINAL DOMAIN, OMICRON BA.1.20, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.DHAMOTHARAN,A.SCHLUNDT,S.GUENTHER REVDAT 1 20-NOV-24 9EZB 0 JRNL AUTH K.DHAMOTHARAN,A.SCHLUNDT,S.GUENTHER JRNL TITL STRUCTURE OF N-TERMINAL DOMAIN MUTANT P67S OF NUCLEOCAPSID JRNL TITL 2 PROTEIN OF SARS-COV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 69694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2555 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2635 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.21390 REMARK 3 B22 (A**2) : -8.60910 REMARK 3 B33 (A**2) : 6.39520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8871 -1.4994 -7.651 REMARK 3 T TENSOR REMARK 3 T11: -0.0065 T22: -0.0602 REMARK 3 T33: -0.046 T12: -0.0435 REMARK 3 T13: -0.0168 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.3986 L22: 1.326 REMARK 3 L33: 3.7743 L12: -0.189 REMARK 3 L13: -0.6774 L23: 0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.1298 S13: -0.0423 REMARK 3 S21: 0.1298 S22: -0.0962 S23: 0.0326 REMARK 3 S31: -0.0423 S32: 0.0326 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5694 16.7589 -27.2459 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: -0.1021 REMARK 3 T33: 0.0193 T12: 0.0323 REMARK 3 T13: 0.0542 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.1251 L22: 4.4062 REMARK 3 L33: 2.0823 L12: 0.6293 REMARK 3 L13: 0.0166 L23: -1.1079 REMARK 3 S TENSOR REMARK 3 S11: 0.172 S12: 0.4571 S13: -0.5442 REMARK 3 S21: 0.4571 S22: -0.0263 S23: -0.0675 REMARK 3 S31: -0.5442 S32: -0.0675 S33: -0.1456 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 174 REMARK 3 ORIGIN FOR THE GROUP (A): 22.378 -13.6359 -31.1922 REMARK 3 T TENSOR REMARK 3 T11: -0.0094 T22: -0.063 REMARK 3 T33: 0.1025 T12: 0.0639 REMARK 3 T13: 0.0351 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.8516 L22: 1.9742 REMARK 3 L33: 3.0204 L12: -0.6682 REMARK 3 L13: -0.4002 L23: -0.1403 REMARK 3 S TENSOR REMARK 3 S11: -0.085 S12: -0.0752 S13: 0.4904 REMARK 3 S21: -0.0752 S22: -0.0693 S23: 0.2307 REMARK 3 S31: 0.4904 S32: 0.2307 S33: 0.1543 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 48 D 174 REMARK 3 RESIDUE RANGE : D 201 D 201 REMARK 3 ORIGIN FOR THE GROUP (A): -10.399 -5.0233 -36.1266 REMARK 3 T TENSOR REMARK 3 T11: -0.085 T22: 0.1595 REMARK 3 T33: -0.0527 T12: 0.0157 REMARK 3 T13: -0.0118 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.7006 L22: 1.7022 REMARK 3 L33: 2.3251 L12: -0.2018 REMARK 3 L13: 1.4687 L23: -0.1861 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.1499 S13: 0.0892 REMARK 3 S21: -0.1499 S22: -0.0191 S23: 0.1195 REMARK 3 S31: 0.0892 S32: 0.1195 S33: -0.0747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97598 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7, XDS BUILT REMARK 200 20230630 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.13, POINTLESS REMARK 200 1.12.15, STARANISO 2.3.74 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 96.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM SODIUM CHLORIDE 28% PEG SMEAR REMARK 280 MEDIUM, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.39450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.19650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.23300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.19650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.39450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.23300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 GLN A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 PRO A 46 REMARK 465 ASN A 47 REMARK 465 GLY B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLN B 43 REMARK 465 GLY B 44 REMARK 465 LEU B 45 REMARK 465 PRO B 46 REMARK 465 ASN B 47 REMARK 465 ASN B 48 REMARK 465 THR B 49 REMARK 465 GLU B 174 REMARK 465 GLY C 39 REMARK 465 SER C 40 REMARK 465 ARG C 41 REMARK 465 PRO C 42 REMARK 465 GLN C 43 REMARK 465 GLY C 44 REMARK 465 LEU C 45 REMARK 465 PRO C 46 REMARK 465 ASN C 47 REMARK 465 GLY D 39 REMARK 465 SER D 40 REMARK 465 ARG D 41 REMARK 465 PRO D 42 REMARK 465 GLN D 43 REMARK 465 GLY D 44 REMARK 465 LEU D 45 REMARK 465 PRO D 46 REMARK 465 ASN D 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS D 59 OE2 GLU D 174 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU B 136 HB2 GLN C 163 3654 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 143 52.88 -101.90 REMARK 500 LYS B 143 50.95 -102.18 REMARK 500 LYS C 143 54.24 -102.71 REMARK 500 TYR C 172 158.24 178.38 REMARK 500 LYS D 143 52.38 -100.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 309 DISTANCE = 8.30 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EXB RELATED DB: PDB REMARK 900 RELATED ID: 9F83 RELATED DB: PDB REMARK 900 RELATED ID: 9F7A RELATED DB: PDB REMARK 900 RELATED ID: 9F5L RELATED DB: PDB REMARK 900 RELATED ID: 9EVY RELATED DB: PDB REMARK 900 RELATED ID: 9FBG RELATED DB: PDB REMARK 900 RELATED ID: 9F5J RELATED DB: PDB REMARK 900 RELATED ID: 9F7C RELATED DB: PDB REMARK 900 RELATED ID: 9EWH RELATED DB: PDB DBREF 9EZB A 41 174 UNP P0DTC9 NCAP_SARS2 41 174 DBREF 9EZB B 41 174 UNP P0DTC9 NCAP_SARS2 41 174 DBREF 9EZB C 41 174 UNP P0DTC9 NCAP_SARS2 41 174 DBREF 9EZB D 41 174 UNP P0DTC9 NCAP_SARS2 41 174 SEQADV 9EZB GLY A 39 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER A 40 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER A 67 UNP P0DTC9 PRO 67 ENGINEERED MUTATION SEQADV 9EZB GLY B 39 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER B 40 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER B 67 UNP P0DTC9 PRO 67 ENGINEERED MUTATION SEQADV 9EZB GLY C 39 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER C 40 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER C 67 UNP P0DTC9 PRO 67 ENGINEERED MUTATION SEQADV 9EZB GLY D 39 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER D 40 UNP P0DTC9 EXPRESSION TAG SEQADV 9EZB SER D 67 UNP P0DTC9 PRO 67 ENGINEERED MUTATION SEQRES 1 A 136 GLY SER ARG PRO GLN GLY LEU PRO ASN ASN THR ALA SER SEQRES 2 A 136 TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP LEU SEQRES 3 A 136 LYS PHE SER ARG GLY GLN GLY VAL PRO ILE ASN THR ASN SEQRES 4 A 136 SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG ALA SEQRES 5 A 136 THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS ASP SEQRES 6 A 136 LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR GLY SEQRES 7 A 136 PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP GLY SEQRES 8 A 136 ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR PRO SEQRES 9 A 136 LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN ALA SEQRES 10 A 136 ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU PRO SEQRES 11 A 136 LYS GLY PHE TYR ALA GLU SEQRES 1 B 136 GLY SER ARG PRO GLN GLY LEU PRO ASN ASN THR ALA SER SEQRES 2 B 136 TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP LEU SEQRES 3 B 136 LYS PHE SER ARG GLY GLN GLY VAL PRO ILE ASN THR ASN SEQRES 4 B 136 SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG ALA SEQRES 5 B 136 THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS ASP SEQRES 6 B 136 LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR GLY SEQRES 7 B 136 PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP GLY SEQRES 8 B 136 ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR PRO SEQRES 9 B 136 LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN ALA SEQRES 10 B 136 ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU PRO SEQRES 11 B 136 LYS GLY PHE TYR ALA GLU SEQRES 1 C 136 GLY SER ARG PRO GLN GLY LEU PRO ASN ASN THR ALA SER SEQRES 2 C 136 TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP LEU SEQRES 3 C 136 LYS PHE SER ARG GLY GLN GLY VAL PRO ILE ASN THR ASN SEQRES 4 C 136 SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG ALA SEQRES 5 C 136 THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS ASP SEQRES 6 C 136 LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR GLY SEQRES 7 C 136 PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP GLY SEQRES 8 C 136 ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR PRO SEQRES 9 C 136 LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN ALA SEQRES 10 C 136 ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU PRO SEQRES 11 C 136 LYS GLY PHE TYR ALA GLU SEQRES 1 D 136 GLY SER ARG PRO GLN GLY LEU PRO ASN ASN THR ALA SER SEQRES 2 D 136 TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP LEU SEQRES 3 D 136 LYS PHE SER ARG GLY GLN GLY VAL PRO ILE ASN THR ASN SEQRES 4 D 136 SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG ALA SEQRES 5 D 136 THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS ASP SEQRES 6 D 136 LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR GLY SEQRES 7 D 136 PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP GLY SEQRES 8 D 136 ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR PRO SEQRES 9 D 136 LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN ALA SEQRES 10 D 136 ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU PRO SEQRES 11 D 136 LYS GLY PHE TYR ALA GLU HET CL A 201 1 HET PEG B 201 17 HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 CL CL 1- FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *436(H2 O) HELIX 1 AA1 SER A 79 ASP A 82 5 4 HELIX 2 AA2 THR A 115 ALA A 119 5 5 HELIX 3 AA3 SER B 79 ASP B 82 5 4 HELIX 4 AA4 THR B 115 ALA B 119 5 5 HELIX 5 AA5 SER C 79 ASP C 82 5 4 HELIX 6 AA6 SER D 79 ASP D 82 5 4 SHEET 1 AA1 4 LEU A 56 THR A 57 0 SHEET 2 AA1 4 ARG A 107 TYR A 112 -1 O TRP A 108 N LEU A 56 SHEET 3 AA1 4 ILE A 84 ALA A 90 -1 N ALA A 90 O ARG A 107 SHEET 4 AA1 4 ILE A 130 ALA A 134 -1 O VAL A 133 N GLY A 85 SHEET 1 AA2 2 ARG A 93 ARG A 95 0 SHEET 2 AA2 2 MET A 101 ASP A 103 -1 O LYS A 102 N ILE A 94 SHEET 1 AA3 4 LEU B 56 THR B 57 0 SHEET 2 AA3 4 ARG B 107 TYR B 112 -1 O TRP B 108 N LEU B 56 SHEET 3 AA3 4 ILE B 84 ALA B 90 -1 N ALA B 90 O ARG B 107 SHEET 4 AA3 4 ILE B 130 ALA B 134 -1 O VAL B 133 N GLY B 85 SHEET 1 AA4 2 ARG B 93 ARG B 95 0 SHEET 2 AA4 2 MET B 101 ASP B 103 -1 O LYS B 102 N ILE B 94 SHEET 1 AA5 5 ILE C 130 ALA C 134 0 SHEET 2 AA5 5 ILE C 84 ALA C 90 -1 N GLY C 85 O VAL C 133 SHEET 3 AA5 5 ARG C 107 TYR C 112 -1 O ARG C 107 N ALA C 90 SHEET 4 AA5 5 LEU C 56 GLN C 58 -1 N LEU C 56 O TRP C 108 SHEET 5 AA5 5 PHE C 171 ALA C 173 -1 O TYR C 172 N THR C 57 SHEET 1 AA6 2 ARG C 93 ARG C 95 0 SHEET 2 AA6 2 MET C 101 ASP C 103 -1 O LYS C 102 N ILE C 94 SHEET 1 AA7 5 ILE D 130 ALA D 134 0 SHEET 2 AA7 5 ILE D 84 ALA D 90 -1 N GLY D 85 O VAL D 133 SHEET 3 AA7 5 ARG D 107 TYR D 112 -1 O ARG D 107 N ALA D 90 SHEET 4 AA7 5 LEU D 56 GLN D 58 -1 N LEU D 56 O TRP D 108 SHEET 5 AA7 5 PHE D 171 TYR D 172 -1 O TYR D 172 N THR D 57 SHEET 1 AA8 2 ARG D 93 ARG D 95 0 SHEET 2 AA8 2 MET D 101 ASP D 103 -1 O LYS D 102 N ILE D 94 CRYST1 58.789 92.466 96.393 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017010 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010374 0.00000