data_9F06 # _entry.id 9F06 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9F06 pdb_00009f06 10.2210/pdb9f06/pdb WWPDB D_1292136746 ? ? EMDB EMD-50095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-23 ? 2 'EM metadata' 1 0 2025-04-23 ? 3 FSC 1 0 2025-04-23 ? 4 'Half map' 1 0 2025-04-23 1 5 'Half map' 1 0 2025-04-23 2 6 Image 1 0 2025-04-23 ? 7 Mask 1 0 2025-04-23 1 8 'Primary map' 1 0 2025-04-23 ? 9 'Structure model' 1 1 2025-07-02 ? 10 'EM metadata' 1 1 2025-07-02 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 9 'Structure model' 'Data collection' 2 10 'EM metadata' 'Data processing' 3 10 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 9 'Structure model' em_admin 2 9 'Structure model' em_software 3 10 'EM metadata' em_admin 4 10 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 9 'Structure model' '_em_admin.last_update' 2 9 'Structure model' '_em_software.name' 3 10 'EM metadata' '_em_admin.last_update' 4 10 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9F06 _pdbx_database_status.recvd_initial_deposition_date 2024-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - tube proteins' _pdbx_database_related.db_id EMD-50095 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email pavel.plevka@ceitec.muni.cz _pdbx_contact_author.name_first Pavel _pdbx_contact_author.name_last Plevka _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4215-3315 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Binovsky, J.' 1 0000-0001-7647-5211 'Siborova, M.' 2 0000-0002-6879-5247 'Plevka, P.' 3 0000-0003-4215-3315 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cell attachment and tail contraction of S. aureus phage phi812' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Binovsky, J.' 1 0000-0001-7647-5211 primary 'Siborova, M.' 2 0000-0002-6879-5247 primary 'Plevka, P.' 3 0000-0003-4215-3315 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Capsid protein' _entity.formula_weight 15942.970 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'tail tube protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGTITVERLRMKKENFADLGYAS LGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQTNEIVTEEIEFSYLTASDKART ; _entity_poly.pdbx_seq_one_letter_code_can ;MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGTITVERLRMKKENFADLGYAS LGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQTNEIVTEEIEFSYLTASDKART ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 GLU n 1 5 ALA n 1 6 LYS n 1 7 GLN n 1 8 THR n 1 9 VAL n 1 10 HIS n 1 11 THR n 1 12 GLY n 1 13 ASN n 1 14 THR n 1 15 VAL n 1 16 LEU n 1 17 LEU n 1 18 MET n 1 19 ILE n 1 20 LYS n 1 21 GLY n 1 22 LYS n 1 23 PRO n 1 24 VAL n 1 25 GLY n 1 26 ARG n 1 27 ALA n 1 28 GLN n 1 29 SER n 1 30 ALA n 1 31 SER n 1 32 GLY n 1 33 GLN n 1 34 ARG n 1 35 GLU n 1 36 TYR n 1 37 GLY n 1 38 THR n 1 39 THR n 1 40 GLY n 1 41 VAL n 1 42 TYR n 1 43 GLU n 1 44 ILE n 1 45 GLY n 1 46 SER n 1 47 ILE n 1 48 MET n 1 49 PRO n 1 50 GLN n 1 51 GLU n 1 52 HIS n 1 53 VAL n 1 54 TYR n 1 55 LEU n 1 56 ARG n 1 57 TYR n 1 58 GLU n 1 59 GLY n 1 60 THR n 1 61 ILE n 1 62 THR n 1 63 VAL n 1 64 GLU n 1 65 ARG n 1 66 LEU n 1 67 ARG n 1 68 MET n 1 69 LYS n 1 70 LYS n 1 71 GLU n 1 72 ASN n 1 73 PHE n 1 74 ALA n 1 75 ASP n 1 76 LEU n 1 77 GLY n 1 78 TYR n 1 79 ALA n 1 80 SER n 1 81 LEU n 1 82 GLY n 1 83 GLU n 1 84 GLU n 1 85 ILE n 1 86 LEU n 1 87 LYS n 1 88 LYS n 1 89 ASP n 1 90 ILE n 1 91 ILE n 1 92 ASP n 1 93 ILE n 1 94 LEU n 1 95 VAL n 1 96 VAL n 1 97 ASP n 1 98 ASN n 1 99 LEU n 1 100 THR n 1 101 LYS n 1 102 GLN n 1 103 VAL n 1 104 ILE n 1 105 ILE n 1 106 SER n 1 107 TYR n 1 108 HIS n 1 109 GLY n 1 110 CYS n 1 111 SER n 1 112 ALA n 1 113 ASN n 1 114 ASN n 1 115 TYR n 1 116 ASN n 1 117 GLU n 1 118 THR n 1 119 TRP n 1 120 GLN n 1 121 THR n 1 122 ASN n 1 123 GLU n 1 124 ILE n 1 125 VAL n 1 126 THR n 1 127 GLU n 1 128 GLU n 1 129 ILE n 1 130 GLU n 1 131 PHE n 1 132 SER n 1 133 TYR n 1 134 LEU n 1 135 THR n 1 136 ALA n 1 137 SER n 1 138 ASP n 1 139 LYS n 1 140 ALA n 1 141 ARG n 1 142 THR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 142 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Staphylococcus phage 812' _entity_src_nat.pdbx_ncbi_taxonomy_id 307898 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 THR 142 142 142 THR THR A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 LYS 6 6 6 LYS LYS B . n B 1 7 GLN 7 7 7 GLN GLN B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 HIS 10 10 10 HIS HIS B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 ASN 13 13 13 ASN ASN B . n B 1 14 THR 14 14 14 THR THR B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 MET 18 18 18 MET MET B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 SER 31 31 31 SER SER B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 GLN 33 33 33 GLN GLN B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 TYR 36 36 36 TYR TYR B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 THR 38 38 38 THR THR B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 GLY 45 45 45 GLY GLY B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 MET 48 48 48 MET MET B . n B 1 49 PRO 49 49 49 PRO PRO B . n B 1 50 GLN 50 50 50 GLN GLN B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 HIS 52 52 52 HIS HIS B . n B 1 53 VAL 53 53 53 VAL VAL B . n B 1 54 TYR 54 54 54 TYR TYR B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 TYR 57 57 57 TYR TYR B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 GLY 59 59 59 GLY GLY B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 THR 62 62 62 THR THR B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 MET 68 68 68 MET MET B . n B 1 69 LYS 69 69 69 LYS LYS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 ASN 72 72 72 ASN ASN B . n B 1 73 PHE 73 73 73 PHE PHE B . n B 1 74 ALA 74 74 74 ALA ALA B . n B 1 75 ASP 75 75 75 ASP ASP B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 GLY 77 77 77 GLY GLY B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 ALA 79 79 79 ALA ALA B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 LYS 87 87 87 LYS LYS B . n B 1 88 LYS 88 88 88 LYS LYS B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 ILE 90 90 90 ILE ILE B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 ASP 92 92 92 ASP ASP B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 ASP 97 97 97 ASP ASP B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 THR 100 100 100 THR THR B . n B 1 101 LYS 101 101 101 LYS LYS B . n B 1 102 GLN 102 102 102 GLN GLN B . n B 1 103 VAL 103 103 103 VAL VAL B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 ILE 105 105 105 ILE ILE B . n B 1 106 SER 106 106 106 SER SER B . n B 1 107 TYR 107 107 107 TYR TYR B . n B 1 108 HIS 108 108 108 HIS HIS B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 CYS 110 110 110 CYS CYS B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 ASN 114 114 114 ASN ASN B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 GLU 117 117 117 GLU GLU B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 TRP 119 119 119 TRP TRP B . n B 1 120 GLN 120 120 120 GLN GLN B . n B 1 121 THR 121 121 121 THR THR B . n B 1 122 ASN 122 122 122 ASN ASN B . n B 1 123 GLU 123 123 123 GLU GLU B . n B 1 124 ILE 124 124 124 ILE ILE B . n B 1 125 VAL 125 125 125 VAL VAL B . n B 1 126 THR 126 126 126 THR THR B . n B 1 127 GLU 127 127 127 GLU GLU B . n B 1 128 GLU 128 128 128 GLU GLU B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 GLU 130 130 130 GLU GLU B . n B 1 131 PHE 131 131 131 PHE PHE B . n B 1 132 SER 132 132 132 SER SER B . n B 1 133 TYR 133 133 133 TYR TYR B . n B 1 134 LEU 134 134 134 LEU LEU B . n B 1 135 THR 135 135 135 THR THR B . n B 1 136 ALA 136 136 136 ALA ALA B . n B 1 137 SER 137 137 137 SER SER B . n B 1 138 ASP 138 138 138 ASP ASP B . n B 1 139 LYS 139 139 139 LYS LYS B . n B 1 140 ALA 140 140 140 ALA ALA B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 THR 142 142 142 THR THR B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 ALA 2 2 2 ALA ALA C . n C 1 3 SER 3 3 3 SER SER C . n C 1 4 GLU 4 4 4 GLU GLU C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 LYS 6 6 6 LYS LYS C . n C 1 7 GLN 7 7 7 GLN GLN C . n C 1 8 THR 8 8 8 THR THR C . n C 1 9 VAL 9 9 9 VAL VAL C . n C 1 10 HIS 10 10 10 HIS HIS C . n C 1 11 THR 11 11 11 THR THR C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 ASN 13 13 13 ASN ASN C . n C 1 14 THR 14 14 14 THR THR C . n C 1 15 VAL 15 15 15 VAL VAL C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 MET 18 18 18 MET MET C . n C 1 19 ILE 19 19 19 ILE ILE C . n C 1 20 LYS 20 20 20 LYS LYS C . n C 1 21 GLY 21 21 21 GLY GLY C . n C 1 22 LYS 22 22 22 LYS LYS C . n C 1 23 PRO 23 23 23 PRO PRO C . n C 1 24 VAL 24 24 24 VAL VAL C . n C 1 25 GLY 25 25 25 GLY GLY C . n C 1 26 ARG 26 26 26 ARG ARG C . n C 1 27 ALA 27 27 27 ALA ALA C . n C 1 28 GLN 28 28 28 GLN GLN C . n C 1 29 SER 29 29 29 SER SER C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 SER 31 31 31 SER SER C . n C 1 32 GLY 32 32 32 GLY GLY C . n C 1 33 GLN 33 33 33 GLN GLN C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 GLU 35 35 35 GLU GLU C . n C 1 36 TYR 36 36 36 TYR TYR C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 THR 38 38 38 THR THR C . n C 1 39 THR 39 39 39 THR THR C . n C 1 40 GLY 40 40 40 GLY GLY C . n C 1 41 VAL 41 41 41 VAL VAL C . n C 1 42 TYR 42 42 42 TYR TYR C . n C 1 43 GLU 43 43 43 GLU GLU C . n C 1 44 ILE 44 44 44 ILE ILE C . n C 1 45 GLY 45 45 45 GLY GLY C . n C 1 46 SER 46 46 46 SER SER C . n C 1 47 ILE 47 47 47 ILE ILE C . n C 1 48 MET 48 48 48 MET MET C . n C 1 49 PRO 49 49 49 PRO PRO C . n C 1 50 GLN 50 50 50 GLN GLN C . n C 1 51 GLU 51 51 51 GLU GLU C . n C 1 52 HIS 52 52 52 HIS HIS C . n C 1 53 VAL 53 53 53 VAL VAL C . n C 1 54 TYR 54 54 54 TYR TYR C . n C 1 55 LEU 55 55 55 LEU LEU C . n C 1 56 ARG 56 56 56 ARG ARG C . n C 1 57 TYR 57 57 57 TYR TYR C . n C 1 58 GLU 58 58 58 GLU GLU C . n C 1 59 GLY 59 59 59 GLY GLY C . n C 1 60 THR 60 60 60 THR THR C . n C 1 61 ILE 61 61 61 ILE ILE C . n C 1 62 THR 62 62 62 THR THR C . n C 1 63 VAL 63 63 63 VAL VAL C . n C 1 64 GLU 64 64 64 GLU GLU C . n C 1 65 ARG 65 65 65 ARG ARG C . n C 1 66 LEU 66 66 66 LEU LEU C . n C 1 67 ARG 67 67 67 ARG ARG C . n C 1 68 MET 68 68 68 MET MET C . n C 1 69 LYS 69 69 69 LYS LYS C . n C 1 70 LYS 70 70 70 LYS LYS C . n C 1 71 GLU 71 71 71 GLU GLU C . n C 1 72 ASN 72 72 72 ASN ASN C . n C 1 73 PHE 73 73 73 PHE PHE C . n C 1 74 ALA 74 74 74 ALA ALA C . n C 1 75 ASP 75 75 75 ASP ASP C . n C 1 76 LEU 76 76 76 LEU LEU C . n C 1 77 GLY 77 77 77 GLY GLY C . n C 1 78 TYR 78 78 78 TYR TYR C . n C 1 79 ALA 79 79 79 ALA ALA C . n C 1 80 SER 80 80 80 SER SER C . n C 1 81 LEU 81 81 81 LEU LEU C . n C 1 82 GLY 82 82 82 GLY GLY C . n C 1 83 GLU 83 83 83 GLU GLU C . n C 1 84 GLU 84 84 84 GLU GLU C . n C 1 85 ILE 85 85 85 ILE ILE C . n C 1 86 LEU 86 86 86 LEU LEU C . n C 1 87 LYS 87 87 87 LYS LYS C . n C 1 88 LYS 88 88 88 LYS LYS C . n C 1 89 ASP 89 89 89 ASP ASP C . n C 1 90 ILE 90 90 90 ILE ILE C . n C 1 91 ILE 91 91 91 ILE ILE C . n C 1 92 ASP 92 92 92 ASP ASP C . n C 1 93 ILE 93 93 93 ILE ILE C . n C 1 94 LEU 94 94 94 LEU LEU C . n C 1 95 VAL 95 95 95 VAL VAL C . n C 1 96 VAL 96 96 96 VAL VAL C . n C 1 97 ASP 97 97 97 ASP ASP C . n C 1 98 ASN 98 98 98 ASN ASN C . n C 1 99 LEU 99 99 99 LEU LEU C . n C 1 100 THR 100 100 100 THR THR C . n C 1 101 LYS 101 101 101 LYS LYS C . n C 1 102 GLN 102 102 102 GLN GLN C . n C 1 103 VAL 103 103 103 VAL VAL C . n C 1 104 ILE 104 104 104 ILE ILE C . n C 1 105 ILE 105 105 105 ILE ILE C . n C 1 106 SER 106 106 106 SER SER C . n C 1 107 TYR 107 107 107 TYR TYR C . n C 1 108 HIS 108 108 108 HIS HIS C . n C 1 109 GLY 109 109 109 GLY GLY C . n C 1 110 CYS 110 110 110 CYS CYS C . n C 1 111 SER 111 111 111 SER SER C . n C 1 112 ALA 112 112 112 ALA ALA C . n C 1 113 ASN 113 113 113 ASN ASN C . n C 1 114 ASN 114 114 114 ASN ASN C . n C 1 115 TYR 115 115 115 TYR TYR C . n C 1 116 ASN 116 116 116 ASN ASN C . n C 1 117 GLU 117 117 117 GLU GLU C . n C 1 118 THR 118 118 118 THR THR C . n C 1 119 TRP 119 119 119 TRP TRP C . n C 1 120 GLN 120 120 120 GLN GLN C . n C 1 121 THR 121 121 121 THR THR C . n C 1 122 ASN 122 122 122 ASN ASN C . n C 1 123 GLU 123 123 123 GLU GLU C . n C 1 124 ILE 124 124 124 ILE ILE C . n C 1 125 VAL 125 125 125 VAL VAL C . n C 1 126 THR 126 126 126 THR THR C . n C 1 127 GLU 127 127 127 GLU GLU C . n C 1 128 GLU 128 128 128 GLU GLU C . n C 1 129 ILE 129 129 129 ILE ILE C . n C 1 130 GLU 130 130 130 GLU GLU C . n C 1 131 PHE 131 131 131 PHE PHE C . n C 1 132 SER 132 132 132 SER SER C . n C 1 133 TYR 133 133 133 TYR TYR C . n C 1 134 LEU 134 134 134 LEU LEU C . n C 1 135 THR 135 135 135 THR THR C . n C 1 136 ALA 136 136 136 ALA ALA C . n C 1 137 SER 137 137 137 SER SER C . n C 1 138 ASP 138 138 138 ASP ASP C . n C 1 139 LYS 139 139 139 LYS LYS C . n C 1 140 ALA 140 140 140 ALA ALA C . n C 1 141 ARG 141 141 141 ARG ARG C . n C 1 142 THR 142 142 142 THR THR C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9F06 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9F06 _struct.title 'Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - tube proteins' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9F06 _struct_keywords.text 'bacteriophage, phage, contractile, phi812, tail, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1YTP2_9CAUD _struct_ref.pdbx_db_accession A1YTP2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGTITVERLRMKKENFADLGYAS LGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQTNEIVTEEIEFSYLTASDKART ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9F06 A 1 ? 142 ? A1YTP2 1 ? 142 ? 1 142 2 1 9F06 B 1 ? 142 ? A1YTP2 1 ? 142 ? 1 142 3 1 9F06 C 1 ? 142 ? A1YTP2 1 ? 142 ? 1 142 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.16_b42360.' _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4,5,6,7,8,9,10,11 A,B,C 1 12 A,B,C 1 13 A,B,C 1 14 A,B,C 1 15 A,B,C 1 16 A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.500000 -0.866025 0.0 184.81778 0.866025 0.500000 0.0 -49.52178 -0.0 0.0 1.0 0.0 3 'point symmetry operation' ? ? -0.500000 -0.866025 0.0 320.11379 0.866025 -0.500000 0.0 85.77423 0.0 0.0 1.0 0.0 4 'point symmetry operation' ? ? -1.0 -0.0 0.0 270.59202 0.0 -1.0 0.0 270.59201 0.0 0.0 1.0 0.0 5 'point symmetry operation' ? ? -0.500000 0.866025 0.0 85.77424 -0.866025 -0.500000 0.0 320.11379 0.0 0.0 1.0 0.0 6 'point symmetry operation' ? ? 0.500000 0.866025 0.0 -49.52177 -0.866025 0.500000 0.0 184.81778 0.0 -0.0 1.0 0.0 7 'point symmetry operation' ? ? 0.500000 -0.866025 0.0 184.81778 0.866025 0.500000 0.0 -49.52178 -0.0 0.0 1.0 0.0 8 'point symmetry operation' ? ? -0.500000 -0.866025 0.0 320.11379 0.866025 -0.500000 0.0 85.77423 0.0 0.0 1.0 0.0 9 'point symmetry operation' ? ? -1.0 -0.0 0.0 270.59202 0.0 -1.0 0.0 270.59201 0.0 0.0 1.0 0.0 10 'point symmetry operation' ? ? -0.500000 0.866025 0.0 85.77424 -0.866025 -0.500000 0.0 320.11379 0.0 0.0 1.0 0.0 11 'point symmetry operation' ? ? 0.500000 0.866025 0.0 -49.52177 -0.866025 0.500000 0.0 184.81778 0.0 -0.0 1.0 0.0 12 'point symmetry operation' ? ? 0.500000 -0.866025 0.000000 184.81778 0.866025 0.500000 0.000000 -49.52178 -0.000000 0.000000 1.000000 0.00000 13 'point symmetry operation' ? ? -0.500000 -0.866025 0.000000 320.11379 0.866025 -0.500000 0.000000 85.77423 0.000000 0.000000 1.000000 0.00000 14 'point symmetry operation' ? ? -1.000000 -0.000000 0.000000 270.59202 0.000000 -1.000000 0.000000 270.59201 0.000000 0.000000 1.000000 0.00000 15 'point symmetry operation' ? ? -0.500000 0.866025 0.000000 85.77424 -0.866025 -0.500000 0.000000 320.11379 0.000000 0.000000 1.000000 0.00000 16 'point symmetry operation' ? ? 0.500000 0.866025 0.000000 -49.52177 -0.866025 0.500000 0.000000 184.81778 0.000000 -0.000000 1.000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 11 ? ASN A 13 ? THR A 11 ASN A 13 5 ? 3 HELX_P HELX_P2 AA2 ASN A 72 ? GLY A 77 ? ASN A 72 GLY A 77 1 ? 6 HELX_P HELX_P3 AA3 GLY A 82 ? LYS A 88 ? GLY A 82 LYS A 88 5 ? 7 HELX_P HELX_P4 AA4 THR B 11 ? ASN B 13 ? THR B 11 ASN B 13 5 ? 3 HELX_P HELX_P5 AA5 ASN B 72 ? GLY B 77 ? ASN B 72 GLY B 77 1 ? 6 HELX_P HELX_P6 AA6 GLY B 82 ? LYS B 88 ? GLY B 82 LYS B 88 5 ? 7 HELX_P HELX_P7 AA7 SER C 3 ? GLN C 7 ? SER C 3 GLN C 7 5 ? 5 HELX_P HELX_P8 AA8 ASN C 72 ? GLY C 77 ? ASN C 72 GLY C 77 1 ? 6 HELX_P HELX_P9 AA9 GLY C 82 ? LYS C 88 ? GLY C 82 LYS C 88 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 7 ? AA5 ? 5 ? AA6 ? 2 ? AA7 ? 7 ? AA8 ? 5 ? AA9 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA7 5 6 ? anti-parallel AA7 6 7 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA9 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 22 ? PRO A 23 ? LYS A 22 PRO A 23 AA1 2 VAL A 15 ? ILE A 19 ? VAL A 15 ILE A 19 AA1 3 ILE A 91 ? ASP A 97 ? ILE A 91 ASP A 97 AA1 4 VAL A 103 ? GLN A 120 ? VAL A 103 GLN A 120 AA1 5 GLU A 123 ? SER A 132 ? GLU A 123 SER A 132 AA1 6 GLU A 58 ? LEU A 66 ? GLU A 58 LEU A 66 AA1 7 ALA A 27 ? GLU A 35 ? ALA A 27 GLU A 35 AA2 1 LYS A 22 ? PRO A 23 ? LYS A 22 PRO A 23 AA2 2 VAL A 15 ? ILE A 19 ? VAL A 15 ILE A 19 AA2 3 ILE A 91 ? ASP A 97 ? ILE A 91 ASP A 97 AA2 4 VAL A 103 ? GLN A 120 ? VAL A 103 GLN A 120 AA2 5 THR A 135 ? SER A 137 ? THR A 135 SER A 137 AA3 1 THR A 39 ? GLY A 40 ? THR A 39 GLY A 40 AA3 2 HIS A 52 ? VAL A 53 ? HIS A 52 VAL A 53 AA4 1 LYS B 22 ? PRO B 23 ? LYS B 22 PRO B 23 AA4 2 VAL B 15 ? ILE B 19 ? VAL B 15 ILE B 19 AA4 3 ILE B 91 ? ASP B 97 ? ILE B 91 ASP B 97 AA4 4 VAL B 103 ? THR B 118 ? VAL B 103 THR B 118 AA4 5 THR B 126 ? SER B 132 ? THR B 126 SER B 132 AA4 6 GLU B 58 ? LEU B 66 ? GLU B 58 LEU B 66 AA4 7 ALA B 27 ? GLU B 35 ? ALA B 27 GLU B 35 AA5 1 LYS B 22 ? PRO B 23 ? LYS B 22 PRO B 23 AA5 2 VAL B 15 ? ILE B 19 ? VAL B 15 ILE B 19 AA5 3 ILE B 91 ? ASP B 97 ? ILE B 91 ASP B 97 AA5 4 VAL B 103 ? THR B 118 ? VAL B 103 THR B 118 AA5 5 THR B 135 ? SER B 137 ? THR B 135 SER B 137 AA6 1 THR B 38 ? VAL B 41 ? THR B 38 VAL B 41 AA6 2 GLU B 51 ? TYR B 54 ? GLU B 51 TYR B 54 AA7 1 LYS C 22 ? PRO C 23 ? LYS C 22 PRO C 23 AA7 2 VAL C 15 ? ILE C 19 ? VAL C 15 ILE C 19 AA7 3 ILE C 91 ? ASP C 97 ? ILE C 91 ASP C 97 AA7 4 VAL C 103 ? THR C 118 ? VAL C 103 THR C 118 AA7 5 THR C 126 ? SER C 132 ? THR C 126 SER C 132 AA7 6 GLU C 58 ? LEU C 66 ? GLU C 58 LEU C 66 AA7 7 ALA C 27 ? GLU C 35 ? ALA C 27 GLU C 35 AA8 1 LYS C 22 ? PRO C 23 ? LYS C 22 PRO C 23 AA8 2 VAL C 15 ? ILE C 19 ? VAL C 15 ILE C 19 AA8 3 ILE C 91 ? ASP C 97 ? ILE C 91 ASP C 97 AA8 4 VAL C 103 ? THR C 118 ? VAL C 103 THR C 118 AA8 5 THR C 135 ? SER C 137 ? THR C 135 SER C 137 AA9 1 THR C 38 ? GLU C 43 ? THR C 38 GLU C 43 AA9 2 SER C 46 ? TYR C 54 ? SER C 46 TYR C 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS A 22 ? O LYS A 22 N ILE A 19 ? N ILE A 19 AA1 2 3 N MET A 18 ? N MET A 18 O LEU A 94 ? O LEU A 94 AA1 3 4 N ILE A 91 ? N ILE A 91 O CYS A 110 ? O CYS A 110 AA1 4 5 N SER A 111 ? N SER A 111 O SER A 132 ? O SER A 132 AA1 5 6 O GLU A 127 ? O GLU A 127 N ARG A 65 ? N ARG A 65 AA1 6 7 O GLU A 58 ? O GLU A 58 N GLU A 35 ? N GLU A 35 AA2 1 2 O LYS A 22 ? O LYS A 22 N ILE A 19 ? N ILE A 19 AA2 2 3 N MET A 18 ? N MET A 18 O LEU A 94 ? O LEU A 94 AA2 3 4 N ILE A 91 ? N ILE A 91 O CYS A 110 ? O CYS A 110 AA2 4 5 N SER A 106 ? N SER A 106 O SER A 137 ? O SER A 137 AA3 1 2 N THR A 39 ? N THR A 39 O VAL A 53 ? O VAL A 53 AA4 1 2 O LYS B 22 ? O LYS B 22 N ILE B 19 ? N ILE B 19 AA4 2 3 N MET B 18 ? N MET B 18 O LEU B 94 ? O LEU B 94 AA4 3 4 N VAL B 95 ? N VAL B 95 O ILE B 104 ? O ILE B 104 AA4 4 5 N SER B 111 ? N SER B 111 O SER B 132 ? O SER B 132 AA4 5 6 O GLU B 127 ? O GLU B 127 N ARG B 65 ? N ARG B 65 AA4 6 7 O THR B 60 ? O THR B 60 N GLN B 33 ? N GLN B 33 AA5 1 2 O LYS B 22 ? O LYS B 22 N ILE B 19 ? N ILE B 19 AA5 2 3 N MET B 18 ? N MET B 18 O LEU B 94 ? O LEU B 94 AA5 3 4 N VAL B 95 ? N VAL B 95 O ILE B 104 ? O ILE B 104 AA5 4 5 N HIS B 108 ? N HIS B 108 O THR B 135 ? O THR B 135 AA6 1 2 N VAL B 41 ? N VAL B 41 O GLU B 51 ? O GLU B 51 AA7 1 2 O LYS C 22 ? O LYS C 22 N ILE C 19 ? N ILE C 19 AA7 2 3 N MET C 18 ? N MET C 18 O LEU C 94 ? O LEU C 94 AA7 3 4 N VAL C 95 ? N VAL C 95 O ILE C 104 ? O ILE C 104 AA7 4 5 N SER C 111 ? N SER C 111 O SER C 132 ? O SER C 132 AA7 5 6 O GLU C 127 ? O GLU C 127 N ARG C 65 ? N ARG C 65 AA7 6 7 O GLU C 58 ? O GLU C 58 N GLU C 35 ? N GLU C 35 AA8 1 2 O LYS C 22 ? O LYS C 22 N ILE C 19 ? N ILE C 19 AA8 2 3 N MET C 18 ? N MET C 18 O LEU C 94 ? O LEU C 94 AA8 3 4 N VAL C 95 ? N VAL C 95 O ILE C 104 ? O ILE C 104 AA8 4 5 N SER C 106 ? N SER C 106 O SER C 137 ? O SER C 137 AA9 1 2 N VAL C 41 ? N VAL C 41 O GLU C 51 ? O GLU C 51 # _pdbx_entry_details.entry_id 9F06 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9F06 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9F06 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 12906 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '50mM Tris, 10mM NaCl, 10mM CaCl2' _em_buffer.pH 8 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 NATURAL VIRUS 'Staphylococcus phage 812' ? ? ? 1 2 1 NATURAL COMPLEX Tail ? ? ? 1 3 2 NATURAL COMPLEX 'Tail tube' ? ? ? 1 # _em_image_scans.entry_id 9F06 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image 1-40 # _em_imaging.entry_id 9F06 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 3000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # loop_ _em_virus_entity.id _em_virus_entity.virus_host_category _em_virus_entity.virus_type _em_virus_entity.virus_isolate _em_virus_entity.entity_assembly_id _em_virus_entity.enveloped _em_virus_entity.empty _em_virus_entity.details 1 ? VIRION SPECIES 1 NO YES ? 2 ? ? ? 2 ? ? ? 3 ? ? ? 3 ? ? ? # _em_vitrification.entry_id 9F06 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9F06 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9F06 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 B MET 1 ? B MET 1 3 1 Y 1 C MET 1 ? C MET 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-04-15 _em_admin.deposition_site PDBE _em_admin.entry_id 9F06 _em_admin.last_update 2025-07-02 _em_admin.map_release_date 2025-04-23 _em_admin.title 'Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - tube proteins' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 1 2 307898 'Staphylococcus phage 812' ? ? ? ? ? ? ? 2 3 307898 'Staphylococcus phage 812' ? ? ? ? ? ? ? 3 4 307898 'Staphylococcus phage 812' ? ? ? ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 7 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 42 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 15371 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Quantum LS' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4.0 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4.0 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.0 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' 'European Union' 101043452 1 'Other government' 'Czech Republic' LX22NP05103 2 # _atom_sites.entry_id 9F06 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #