HEADER DNA BINDING PROTEIN 15-APR-24 9F0E TITLE BACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR CBF/NF-Y/ARCHAEAL HISTONE DOMAIN- COMPND 3 CONTAINING PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*GP*TP*TP*AP*AP*AP*GP*C)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS HD100; SOURCE 3 ORGANISM_TAXID: 264462; SOURCE 4 GENE: BD0055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS BACTERIAL HISTONE, PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HU,R.ALBRECHT,M.D.HARTMANN REVDAT 4 09-OCT-24 9F0E 1 JRNL REVDAT 3 21-AUG-24 9F0E 1 JRNL REVDAT 2 17-JUL-24 9F0E 1 REMARK REVDAT 1 26-JUN-24 9F0E 0 JRNL AUTH Y.HU,S.SCHWAB,S.DEISS,P.ESCUDEIRO,T.VAN HEESCH,J.D.JOINER, JRNL AUTH 2 J.VREEDE,M.D.HARTMANN,A.N.LUPAS,B.H.ALVAREZ,V.ALVA,R.T.DAME JRNL TITL BACTERIAL HISTONE HBB FROM BDELLOVIBRIO BACTERIOVORUS JRNL TITL 2 COMPACTS DNA BY BENDING. JRNL REF NUCLEIC ACIDS RES. V. 52 8193 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38864377 JRNL DOI 10.1093/NAR/GKAE485 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 15932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 862 REMARK 3 NUCLEIC ACID ATOMS : 170 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.87000 REMARK 3 B22 (A**2) : -2.31000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1082 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1028 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1496 ; 1.297 ; 1.541 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2378 ; 1.338 ; 1.716 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 4.692 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ;37.107 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 190 ;14.774 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;15.406 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 158 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1054 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 192 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 478 ; 0.963 ; 1.897 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 477 ; 0.963 ; 1.894 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 596 ; 1.550 ; 2.826 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 597 ; 1.549 ; 2.829 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 604 ; 1.201 ; 3.155 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 588 ; 1.089 ; 3.098 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 876 ; 1.745 ; 4.674 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1206 ; 4.484 ;28.656 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1207 ; 4.482 ;28.668 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 1699 0.04 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9360 -18.1740 13.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.0166 REMARK 3 T33: 0.0233 T12: 0.0067 REMARK 3 T13: 0.0622 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.0901 L22: 2.2996 REMARK 3 L33: 8.3415 L12: 0.4145 REMARK 3 L13: 0.9908 L23: 1.8921 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.0827 S13: 0.0308 REMARK 3 S21: -0.0385 S22: -0.0605 S23: -0.0519 REMARK 3 S31: -0.0154 S32: 0.1547 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9350 -16.8300 15.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.0230 REMARK 3 T33: 0.0124 T12: -0.0073 REMARK 3 T13: 0.0287 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.8848 L22: 2.2058 REMARK 3 L33: 7.4030 L12: -1.1339 REMARK 3 L13: -3.2671 L23: 1.7633 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.0776 S13: -0.0244 REMARK 3 S21: 0.0143 S22: -0.0271 S23: -0.1068 REMARK 3 S31: 0.0325 S32: 0.1805 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 17 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6660 -19.1890 31.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.5676 REMARK 3 T33: 0.6311 T12: -0.0026 REMARK 3 T13: -0.0004 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 5.0663 L22: 1.1156 REMARK 3 L33: 12.6188 L12: 0.1074 REMARK 3 L13: 7.8147 L23: -0.4777 REMARK 3 S TENSOR REMARK 3 S11: 0.2500 S12: -0.2448 S13: -0.2752 REMARK 3 S21: 0.0755 S22: -0.0567 S23: -0.0990 REMARK 3 S31: 0.1625 S32: -0.1726 S33: -0.1933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9F0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.680 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE AND 22% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.34850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.34850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -9.93526 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.55155 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 62 REMARK 465 HIS A 63 REMARK 465 LEU A 64 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 62 REMARK 465 HIS B 63 REMARK 465 LEU B 64 REMARK 465 DT C 1 REMARK 465 DT C 2 REMARK 465 DA C 3 REMARK 465 DA C 4 REMARK 465 DA C 5 REMARK 465 DG C 6 REMARK 465 DC C 7 REMARK 465 DC C 8 REMARK 465 DC C 18 REMARK 465 DC C 19 REMARK 465 DG C 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 13 CE NZ REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 41 CD CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 DC C 17 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DC C 17 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC C 17 C6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CMP RELATED DB: PDB REMARK 900 PROTEIN WITHOUT DNA REMARK 900 RELATED ID: 9EZZ RELATED DB: PDB REMARK 900 DIFFERENT DNA BINDING INTERFACE DBREF 9F0E A 1 64 UNP Q6MRM1 Q6MRM1_BDEBA 1 64 DBREF 9F0E B 1 64 UNP Q6MRM1 Q6MRM1_BDEBA 1 64 DBREF 9F0E C 1 20 PDB 9F0E 9F0E 1 20 SEQADV 9F0E GLY A -1 UNP Q6MRM1 EXPRESSION TAG SEQADV 9F0E HIS A 0 UNP Q6MRM1 EXPRESSION TAG SEQADV 9F0E GLY B -1 UNP Q6MRM1 EXPRESSION TAG SEQADV 9F0E HIS B 0 UNP Q6MRM1 EXPRESSION TAG SEQRES 1 A 66 GLY HIS MET ALA GLU VAL LEU VAL VAL THR SER LYS VAL SEQRES 2 A 66 LYS LYS LEU ILE LYS GLU LYS GLY GLN MET ASN THR SER SEQRES 3 A 66 ALA GLU THR ILE ASP VAL LEU SER LYS ALA ILE GLU GLN SEQRES 4 A 66 LEU CYS LEU LYS GLY VAL GLU SER ALA LYS ALA ASP GLY SEQRES 5 A 66 ARG LYS THR VAL MET ALA ARG ASP ILE VAL ILE ASP HIS SEQRES 6 A 66 LEU SEQRES 1 B 66 GLY HIS MET ALA GLU VAL LEU VAL VAL THR SER LYS VAL SEQRES 2 B 66 LYS LYS LEU ILE LYS GLU LYS GLY GLN MET ASN THR SER SEQRES 3 B 66 ALA GLU THR ILE ASP VAL LEU SER LYS ALA ILE GLU GLN SEQRES 4 B 66 LEU CYS LEU LYS GLY VAL GLU SER ALA LYS ALA ASP GLY SEQRES 5 B 66 ARG LYS THR VAL MET ALA ARG ASP ILE VAL ILE ASP HIS SEQRES 6 B 66 LEU SEQRES 1 C 20 DT DT DA DA DA DG DC DC DC DG DT DT DA SEQRES 2 C 20 DA DA DG DC DC DC DG HET PO4 A 101 5 HET PO4 B 101 5 HET PO4 B 102 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *66(H2 O) HELIX 1 AA1 VAL A 7 GLN A 20 1 14 HELIX 2 AA2 SER A 24 ASP A 49 1 26 HELIX 3 AA3 MET A 55 ILE A 59 5 5 HELIX 4 AA4 VAL B 7 GLN B 20 1 14 HELIX 5 AA5 SER B 24 ASP B 49 1 26 HELIX 6 AA6 MET B 55 ILE B 59 5 5 SHEET 1 AA1 2 ASN A 22 THR A 23 0 SHEET 2 AA1 2 THR B 53 VAL B 54 1 O VAL B 54 N ASN A 22 SHEET 1 AA2 2 THR A 53 VAL A 54 0 SHEET 2 AA2 2 ASN B 22 THR B 23 1 O ASN B 22 N VAL A 54 CRYST1 108.697 34.755 56.433 90.00 100.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009200 0.000000 0.001645 0.00000 SCALE2 0.000000 0.028773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018001 0.00000