HEADER REPLICATION 22-APR-24 9F27 TITLE SOLUTION STRUCTURE OF THE PYROCOCCUS ABYSSI RPA2 WINGED-HELIX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RPA32 SUBUNIT OF THE HETERO-OLIGOMERIC COMPLEX INVOLVED IN COMPND 3 HOMOLOGOUS RECOMBINATION; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE THREE N-TERMINAL RESIDUES GTG RESULT FROM CLONING COMPND 7 AND DO NOT BELONG TO RPA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 GENE: PAB2165; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS WINGED-HELIX DOMAIN, POLYMERASE POLD INTERACTION, PRIMASE PRISL KEYWDS 2 INTERACTION, DISORDERED LINKER, REPLICATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.A.LE MEUR,C.MADRU,F.CORDIER,L.SAUGUET,J.I.GUIJARRO REVDAT 2 22-JAN-25 9F27 1 JRNL REVDAT 1 04-DEC-24 9F27 0 JRNL AUTH M.MARTINEZ-CARRANZA,L.VIALLE,C.MADRU,F.CORDIER,A.D.TEKPINAR, JRNL AUTH 2 A.HAOUZ,P.LEGRAND,R.A.LE MEUR,P.ENGLAND,R.DULERMO, JRNL AUTH 3 J.I.GUIJARRO,G.HENNEKE,L.SAUGUET JRNL TITL COMMUNICATION BETWEEN DNA POLYMERASES AND REPLICATION JRNL TITL 2 PROTEIN A WITHIN THE ARCHAEAL REPLISOME. JRNL REF NAT COMMUN V. 15 10926 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39738083 JRNL DOI 10.1038/S41467-024-55365-W REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE CALCULATED USING A LOG REMARK 3 -HARMONIC POTENTIAL WITH A TOTAL OF 1106 RESTRAINTS: 954 REMARK 3 DISTANCES, 32 HYDROGEN BONDS AND 120 BACKBONE DIHEDRAL ANGLES REMARK 4 REMARK 4 9F27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137503. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.15 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 170 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-98% 13C; U-98% 15N] REMARK 210 RPA2WH, 20 MM MES, 150 MM NACL, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HBHA(CO)NH; 3D HBHAN; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N TOCSY; 2D REMARK 210 CB(CGCD)HD; 2D CB(CGCDCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 4.1.3, NMRPIPE, CCPNMR REMARK 210 ANALYSIS 2.5.2, CNS 1.2.1, ARIA REMARK 210 2.3.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 181 -159.97 -97.94 REMARK 500 1 GLU A 195 -71.01 -82.62 REMARK 500 1 GLU A 196 -69.38 -136.80 REMARK 500 1 GLU A 197 81.07 54.19 REMARK 500 1 GLU A 201 68.51 -113.70 REMARK 500 2 MET A 180 -44.29 74.26 REMARK 500 2 PRO A 199 47.28 -71.85 REMARK 500 2 LYS A 202 41.71 -101.46 REMARK 500 2 GLU A 203 116.03 65.83 REMARK 500 3 THR A 176 -70.90 -78.10 REMARK 500 3 SER A 185 100.26 49.36 REMARK 500 3 GLU A 187 -13.31 -144.45 REMARK 500 3 MET A 190 -76.22 -98.22 REMARK 500 3 GLU A 191 -170.06 57.63 REMARK 500 4 THR A 176 -61.62 -101.30 REMARK 500 4 MET A 180 -62.72 -99.60 REMARK 500 4 MET A 181 74.93 56.52 REMARK 500 4 PRO A 189 82.38 -67.30 REMARK 500 4 LEU A 193 167.62 67.30 REMARK 500 4 GLU A 204 53.50 -102.11 REMARK 500 5 ILE A 179 -71.72 68.65 REMARK 500 5 MET A 190 57.55 -164.83 REMARK 500 5 GLU A 195 30.00 -140.31 REMARK 500 6 GLU A 187 76.93 51.59 REMARK 500 6 GLU A 196 52.40 -146.07 REMARK 500 6 GLU A 201 61.69 63.12 REMARK 500 7 ILE A 179 -65.31 -102.40 REMARK 500 7 PRO A 199 57.44 -68.85 REMARK 500 8 THR A 176 77.94 -116.67 REMARK 500 8 GLU A 187 -68.25 -164.58 REMARK 500 8 GLU A 188 85.99 52.63 REMARK 500 8 PRO A 189 80.26 -69.91 REMARK 500 8 GLU A 192 41.51 -108.41 REMARK 500 8 GLU A 197 120.83 69.89 REMARK 500 8 GLU A 201 72.79 47.94 REMARK 500 9 SER A 185 121.70 69.76 REMARK 500 9 GLU A 187 35.08 -91.61 REMARK 500 9 PRO A 189 40.83 -82.95 REMARK 500 9 MET A 190 78.13 59.29 REMARK 500 9 LEU A 193 39.38 -92.01 REMARK 500 9 LEU A 194 89.57 60.91 REMARK 500 9 GLU A 204 81.88 54.01 REMARK 500 10 THR A 176 96.94 65.05 REMARK 500 10 ILE A 179 -76.20 -95.32 REMARK 500 10 GLU A 183 109.61 167.02 REMARK 500 10 LYS A 202 79.73 60.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34913 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE PYROCOCCUS ABYSSI RPA2 WINGED-HELIX DOMAIN DBREF 9F27 A 178 268 UNP Q9V1Z1 Q9V1Z1_PYRAB 182 272 SEQADV 9F27 GLY A 175 UNP Q9V1Z1 EXPRESSION TAG SEQADV 9F27 THR A 176 UNP Q9V1Z1 EXPRESSION TAG SEQADV 9F27 GLY A 177 UNP Q9V1Z1 EXPRESSION TAG SEQRES 1 A 94 GLY THR GLY GLY ILE MET MET GLU GLU ARG SER ILE GLU SEQRES 2 A 94 GLU PRO MET GLU GLU LEU LEU GLU GLU GLU ILE PRO GLU SEQRES 3 A 94 GLU LYS GLU GLU ASN GLU LEU LEU GLU LYS ALA LYS GLU SEQRES 4 A 94 ASP ILE LEU ASN ILE LEU ARG GLN LYS ARG THR ALA ILE SEQRES 5 A 94 SER ARG LYS TYR ILE LEU LYS LYS LEU GLY ASP LYS TYR SEQRES 6 A 94 ASP GLU GLU THR ILE ASP ASP ALA ILE THR GLU LEU LEU SEQRES 7 A 94 ALA GLN GLY GLU ILE TYR GLU PRO GLU THR GLY TYR TYR SEQRES 8 A 94 LYS LEU LEU HELIX 1 AA1 ASN A 205 ARG A 223 1 19 HELIX 2 AA2 ARG A 228 LEU A 235 1 8 HELIX 3 AA3 GLY A 236 LYS A 238 5 3 HELIX 4 AA4 ASP A 240 GLN A 254 1 15 SHEET 1 AA1 3 ILE A 226 SER A 227 0 SHEET 2 AA1 3 TYR A 264 LEU A 267 -1 O TYR A 265 N ILE A 226 SHEET 3 AA1 3 ILE A 257 GLU A 261 -1 N TYR A 258 O LYS A 266 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MASTER 154 0 0 4 3 0 0 6 770 1 0 8 END