HEADER REPLICATION 22-APR-24 9F28 TITLE CRYSTAL STRUCTURE OF THE HETERODIMERIC PRIMASE FROM PYROCOCCUS ABYSSI TITLE 2 (DELETION OF THE PRIL-CTD DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE SMALL SUBUNIT PRIS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA PRIMASE 41 KDA SUBUNIT,PABP41,P41; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA PRIMASE LARGE SUBUNIT PRIL; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: DNA PRIMASE 46 KDA SUBUNIT,PABP46,P46; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: PRIS, PRIA, PYRAB01820, PAB2236; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 9 ORGANISM_TAXID: 29292; SOURCE 10 GENE: PRIL, PRIB, PYRAB01830, PAB2235; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA PRIMASE, PRIS, PRIL, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR C.MADRU,L.SAUGUET REVDAT 2 22-JAN-25 9F28 1 JRNL REMARK REVDAT 1 04-DEC-24 9F28 0 JRNL AUTH M.MARTINEZ-CARRANZA,L.VIALLE,C.MADRU,F.CORDIER,A.D.TEKPINAR, JRNL AUTH 2 A.HAOUZ,P.LEGRAND,R.A.LE MEUR,P.ENGLAND,R.DULERMO, JRNL AUTH 3 J.I.GUIJARRO,G.HENNEKE,L.SAUGUET JRNL TITL COMMUNICATION BETWEEN DNA POLYMERASES AND REPLICATION JRNL TITL 2 PROTEIN A WITHIN THE ARCHAEAL REPLISOME. JRNL REF NAT COMMUN V. 15 10926 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39738083 JRNL DOI 10.1038/S41467-024-55365-W REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 67117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3348 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2557 REMARK 3 BIN FREE R VALUE : 0.2494 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 59 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62950 REMARK 3 B22 (A**2) : 0.62950 REMARK 3 B33 (A**2) : -1.25890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.136 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.118 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4716 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6338 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1739 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 798 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4716 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 580 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4397 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.89 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.30 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.9792 -37.2335 28.5735 REMARK 3 T TENSOR REMARK 3 T11: -0.029 T22: 0.0807 REMARK 3 T33: -0.0306 T12: -0.0677 REMARK 3 T13: -0.0543 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.462 L22: 0.7251 REMARK 3 L33: 0.9182 L12: -0.6618 REMARK 3 L13: -0.0138 L23: 0.6052 REMARK 3 S TENSOR REMARK 3 S11: 0.1265 S12: 0.0563 S13: 0.1508 REMARK 3 S21: 0.0563 S22: -0.2096 S23: -0.3261 REMARK 3 S31: 0.1508 S32: -0.3261 S33: 0.0832 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 13.6857 -9.8902 59.3333 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.0363 REMARK 3 T33: -0.0419 T12: -0.0244 REMARK 3 T13: -0.0323 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.6746 L22: 0.6536 REMARK 3 L33: 2.5568 L12: 0.2007 REMARK 3 L13: 1.3836 L23: 0.6165 REMARK 3 S TENSOR REMARK 3 S11: 0.2561 S12: 0.2032 S13: 0.0734 REMARK 3 S21: 0.2032 S22: -0.0588 S23: -0.4548 REMARK 3 S31: 0.0734 S32: -0.4548 S33: -0.1973 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9F28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67117 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 39.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.90 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.54200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.28700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.28700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.81300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.28700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.28700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.27100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.28700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.28700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.81300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.28700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.28700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.27100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.54200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 THR A -4 REMARK 465 GLY A -3 REMARK 465 ASP A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 PHE A 345 REMARK 465 GLY B 212 REMARK 465 LYS B 213 REMARK 465 SER B 214 REMARK 465 GLY B 215 REMARK 465 ASP B 216 REMARK 465 ILE B 217 REMARK 465 GLY B 218 REMARK 465 ARG B 219 REMARK 465 PRO B 220 REMARK 465 ARG B 221 REMARK 465 ASP B 222 REMARK 465 ARG B 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 626 2.05 REMARK 500 O HOH A 501 O HOH A 586 2.13 REMARK 500 O HOH A 501 O HOH A 568 2.16 REMARK 500 ND2 ASN A 51 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 494 O HOH B 494 8555 1.19 REMARK 500 O HOH A 501 O HOH B 402 5545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 108 -160.79 -125.22 REMARK 500 ARG A 192 52.21 -143.69 REMARK 500 SER A 295 -16.06 96.04 REMARK 500 SER B 73 79.43 -157.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 865 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 646 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD1 REMARK 620 2 SER A 146 OG 137.6 REMARK 620 3 HOH A 768 O 115.4 91.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 HIS A 108 NE2 100.3 REMARK 620 3 CYS A 114 SG 109.2 114.2 REMARK 620 4 CYS A 117 SG 107.3 105.9 118.3 REMARK 620 N 1 2 3 DBREF 9F28 A 1 345 UNP Q9V292 PRIS_PYRAB 1 345 DBREF 9F28 B 1 215 UNP Q9V291 PRIL_PYRAB 1 215 SEQADV 9F28 GLY A -5 UNP Q9V292 EXPRESSION TAG SEQADV 9F28 THR A -4 UNP Q9V292 EXPRESSION TAG SEQADV 9F28 GLY A -3 UNP Q9V292 EXPRESSION TAG SEQADV 9F28 ASP A -2 UNP Q9V292 EXPRESSION TAG SEQADV 9F28 GLY A -1 UNP Q9V292 EXPRESSION TAG SEQADV 9F28 SER A 0 UNP Q9V292 EXPRESSION TAG SEQADV 9F28 ASP B 216 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 ILE B 217 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 GLY B 218 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 ARG B 219 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 PRO B 220 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 ARG B 221 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 ASP B 222 UNP Q9V291 EXPRESSION TAG SEQADV 9F28 ARG B 223 UNP Q9V291 EXPRESSION TAG SEQRES 1 A 351 GLY THR GLY ASP GLY SER MET LEU LEU ARG GLU VAL THR SEQRES 2 A 351 LYS GLU GLU ARG LYS GLU PHE TYR SER ASN GLU TRP ASN SEQRES 3 A 351 ALA LYS GLN ILE PRO ASP PHE ILE LEU GLN ASN LEU ASP SEQRES 4 A 351 LYS ARG GLU PHE GLY PHE ASP HIS THR GLY GLU GLY PRO SEQRES 5 A 351 SER ASP ARG LYS ASN SER TYR THR ASP VAL ARG ASP LEU SEQRES 6 A 351 GLU ASP TYR ILE LYS ALA THR ALA PRO TYR ALA VAL TYR SEQRES 7 A 351 SER SER VAL ALA PHE TYR GLU LYS PRO GLN GLU MET GLU SEQRES 8 A 351 GLY TRP LEU GLY ALA GLU LEU VAL PHE ASP ILE ASP ALA SEQRES 9 A 351 LYS ASP LEU PRO LEU ARG ARG CYS ASN HIS GLU PRO GLY SEQRES 10 A 351 LYS VAL CYS PRO ILE CYS LEU ASN ASP ALA LYS GLU ILE SEQRES 11 A 351 ALA ARG ASP THR LEU ILE VAL LEU LYS GLU GLU LEU GLY SEQRES 12 A 351 PHE GLU ASP VAL HIS VAL VAL TYR SER GLY ARG GLY TYR SEQRES 13 A 351 HIS ILE ARG VAL MET ASP GLY TRP ALA LEU SER LEU ASP SEQRES 14 A 351 SER LYS SER ARG GLU ARG ILE LEU SER PHE ILE SER ALA SEQRES 15 A 351 SER GLU ILE GLU ASP HIS SER GLU PHE ARG LYS MET LEU SEQRES 16 A 351 LEU GLU ARG ARG GLY TRP PHE VAL LEU ASN HIS GLY TYR SEQRES 17 A 351 PRO ARG VAL PHE ARG LEU ARG PHE GLY TYR PHE ILE LEU SEQRES 18 A 351 ARG VAL LYS VAL GLU HIS LEU ILE ASN PHE GLY ILE ARG SEQRES 19 A 351 LYS ASN ILE ALA LYS ARG ILE LEU ASP ASN LYS GLU THR SEQRES 20 A 351 ILE TYR GLU GLU PHE VAL ARG LYS GLY ILE LEU ALA ALA SEQRES 21 A 351 PHE PRO ASP GLY VAL GLY ILE GLU SER LEU ALA LYS LEU SEQRES 22 A 351 PHE ALA LEU SER THR ARG PHE SER LYS ALA TYR PHE ASP SEQRES 23 A 351 GLY ARG VAL THR VAL ASP LEU LYS ARG ILE LEU ARG LEU SEQRES 24 A 351 PRO SER THR LEU HIS SER LYS VAL GLY LEU ILE ALA LYS SEQRES 25 A 351 TYR ILE GLY ASN ASN GLU ARG ASP VAL MET ARG PHE ASN SEQRES 26 A 351 PRO PHE LYS HIS ALA VAL PRO LYS PHE ARG ARG LYS GLU SEQRES 27 A 351 VAL LYS GLU GLU TYR LYS ARG PHE LEU GLU GLU ASN PHE SEQRES 1 B 223 MET LEU ASP PRO PHE SER GLU LYS ALA LYS GLU LEU LEU SEQRES 2 B 223 LYS GLU PHE GLY SER ILE ASN ASP PHE LEU ASN SER ILE SEQRES 3 B 223 PRO ARG ILE VAL ASP VAL GLU GLU VAL ILE GLU ARG VAL SEQRES 4 B 223 LYS ILE ALA SER ASP ARG LYS LEU LEU GLU GLY PHE VAL SEQRES 5 B 223 ASP ILE GLU ASP ILE LYS ASP LEU ALA GLN PHE TYR ALA SEQRES 6 B 223 LEU LEU GLY ALA LEU SER TYR SER PRO TYR GLY LEU GLU SEQRES 7 B 223 LEU GLU LEU VAL LYS LYS ALA ASN ILE LEU LEU TYR SER SEQRES 8 B 223 GLU ARG ILE ARG ARG GLU LYS GLU ILE ARG PRO GLU GLU SEQRES 9 B 223 ILE SER LEU ARG ILE ASN LYS ALA ILE GLU PHE PRO ILE SEQRES 10 B 223 ASP ASP LEU LYS LYS ILE GLU ARG VAL PHE GLY LYS LEU SEQRES 11 B 223 PRO GLU TYR THR ILE HIS LEU ALA GLU PHE LEU ASP LEU SEQRES 12 B 223 ILE PRO GLY GLU ARG LEU SER GLU TYR TYR ILE TYR ASN SEQRES 13 B 223 GLY ASN VAL TYR LEU ARG LYS GLU ASP LEU ILE LYS VAL SEQRES 14 B 223 TRP MET LYS ALA PHE GLU ARG ASN ILE GLU LYS SER VAL SEQRES 15 B 223 ASN MET LEU TYR GLU ILE ARG ASP GLU LEU PRO GLY PHE SEQRES 16 B 223 PHE ARG GLU VAL LEU GLY GLY ILE LYS GLU VAL ALA GLU SEQRES 17 B 223 GLN GLU PHE GLY LYS SER GLY ASP ILE GLY ARG PRO ARG SEQRES 18 B 223 ASP ARG HET ZN A 401 1 HET MG A 402 1 HET MG A 403 1 HET FMT A 404 3 HET FMT B 301 3 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID FORMUL 3 ZN ZN 2+ FORMUL 4 MG 2(MG 2+) FORMUL 6 FMT 2(C H2 O2) FORMUL 8 HOH *611(H2 O) HELIX 1 AA1 THR A 7 GLU A 18 1 12 HELIX 2 AA2 ASN A 20 ILE A 24 5 5 HELIX 3 AA3 PRO A 25 GLN A 30 1 6 HELIX 4 AA4 ASN A 31 ARG A 35 5 5 HELIX 5 AA5 ASP A 55 ALA A 67 1 13 HELIX 6 AA6 PRO A 81 MET A 84 5 4 HELIX 7 AA7 LYS A 99 LEU A 101 5 3 HELIX 8 AA8 CYS A 114 GLU A 135 1 22 HELIX 9 AA9 ASP A 156 SER A 161 1 6 HELIX 10 AB1 ASP A 163 SER A 175 1 13 HELIX 11 AB2 ASP A 181 ARG A 192 1 12 HELIX 12 AB3 ARG A 193 LEU A 198 5 6 HELIX 13 AB4 GLY A 201 LEU A 215 1 15 HELIX 14 AB5 LYS A 218 GLY A 226 1 9 HELIX 15 AB6 ARG A 228 ASN A 238 1 11 HELIX 16 AB7 ASN A 238 VAL A 247 1 10 HELIX 17 AB8 GLY A 260 ALA A 277 1 18 HELIX 18 AB9 ASP A 280 ASP A 286 1 7 HELIX 19 AC1 ASN A 311 PHE A 318 1 8 HELIX 20 AC2 ASN A 319 ALA A 324 1 6 HELIX 21 AC3 PRO A 326 PHE A 328 5 3 HELIX 22 AC4 ARG A 329 ASN A 344 1 16 HELIX 23 AC5 SER B 6 GLU B 15 1 10 HELIX 24 AC6 SER B 18 VAL B 30 1 13 HELIX 25 AC7 ASP B 31 LYS B 40 1 10 HELIX 26 AC8 ILE B 41 SER B 43 5 3 HELIX 27 AC9 ASP B 44 VAL B 52 1 9 HELIX 28 AD1 GLU B 55 LEU B 70 1 16 HELIX 29 AD2 SER B 71 SER B 73 5 3 HELIX 30 AD3 GLY B 76 GLU B 97 1 22 HELIX 31 AD4 ARG B 101 ILE B 105 5 5 HELIX 32 AD5 PRO B 116 ASP B 118 5 3 HELIX 33 AD6 ASP B 119 GLY B 128 1 10 HELIX 34 AD7 LEU B 137 ILE B 144 1 8 HELIX 35 AD8 ARG B 148 TYR B 152 5 5 HELIX 36 AD9 ARG B 162 GLU B 187 1 26 HELIX 37 AE1 ILE B 188 PRO B 193 5 6 HELIX 38 AE2 GLY B 194 GLU B 210 1 17 SHEET 1 AA1 4 ASP A 48 ASN A 51 0 SHEET 2 AA1 4 PHE A 37 ASP A 40 -1 N PHE A 37 O ASN A 51 SHEET 3 AA1 4 ALA A 70 SER A 74 -1 O TYR A 72 N GLY A 38 SHEET 4 AA1 4 ILE A 290 ARG A 292 -1 O LEU A 291 N SER A 73 SHEET 1 AA2 2 ALA A 76 LYS A 80 0 SHEET 2 AA2 2 GLU A 85 ALA A 90 -1 O LEU A 88 N PHE A 77 SHEET 1 AA3 4 LEU A 92 ASP A 97 0 SHEET 2 AA3 4 GLY A 149 VAL A 154 -1 O VAL A 154 N LEU A 92 SHEET 3 AA3 4 VAL A 141 TYR A 145 -1 N VAL A 144 O HIS A 151 SHEET 4 AA3 4 TYR A 307 GLY A 309 -1 O ILE A 308 N VAL A 143 SHEET 1 AA4 2 LEU A 297 HIS A 298 0 SHEET 2 AA4 2 LEU A 303 ILE A 304 -1 O LEU A 303 N HIS A 298 SHEET 1 AA5 4 ASN B 110 LYS B 111 0 SHEET 2 AA5 4 TYR B 133 HIS B 136 -1 O THR B 134 N ASN B 110 SHEET 3 AA5 4 ASN B 158 LEU B 161 -1 O LEU B 161 N TYR B 133 SHEET 4 AA5 4 ILE B 154 TYR B 155 -1 N TYR B 155 O ASN B 158 LINK OD1 ASP A 95 MG MG A 402 1555 1555 2.54 LINK SG CYS A 106 ZN ZN A 401 1555 1555 2.33 LINK NE2 HIS A 108 ZN ZN A 401 1555 1555 2.49 LINK SG CYS A 114 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 117 ZN ZN A 401 1555 1555 2.36 LINK OG SER A 146 MG MG A 402 1555 1555 2.63 LINK MG MG A 402 O HOH A 768 1555 1555 2.86 LINK MG MG A 403 O HOH A 517 1555 1555 2.97 CRYST1 116.574 116.574 121.084 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008259 0.00000 CONECT 791 4618 CONECT 881 4617 CONECT 899 4617 CONECT 941 4617 CONECT 962 4617 CONECT 1195 4618 CONECT 4617 881 899 941 962 CONECT 4618 791 1195 4893 CONECT 4619 4642 CONECT 4620 4621 4622 CONECT 4621 4620 CONECT 4622 4620 CONECT 4623 4624 4625 CONECT 4624 4623 CONECT 4625 4623 CONECT 4642 4619 CONECT 4893 4618 MASTER 379 0 5 38 16 0 0 6 5226 2 17 45 END