HEADER VIRAL PROTEIN 29-APR-24 9F5J TITLE SARS-COV-2 NUCLEOCAPSID N-TERMINAL DOMAIN (NTD) MUTANT Q58I COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, NUCELOCAPSID, N-TERMINAL DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.DHAMOTHARAN,A.SCHLUNDT REVDAT 1 20-NOV-24 9F5J 0 JRNL AUTH K.DHAMOTHARAN,A.SCHLUNDT,S.GUENTHER JRNL TITL STRUCTURE OF N-TERMINAL DOMAIN MUTANT Q58I OF NUCLEOCAPSID JRNL TITL 2 PROTEIN OF SARS-COV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.982 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05300 REMARK 3 B22 (A**2) : 2.42800 REMARK 3 B33 (A**2) : -4.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1958 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1791 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2659 ; 1.909 ; 1.804 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4119 ; 0.686 ; 1.763 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 5.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 7.758 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 286 ;14.567 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2381 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 479 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 270 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 52 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 933 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 973 ; 2.596 ; 3.569 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 973 ; 2.596 ; 3.570 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1211 ; 3.812 ; 6.396 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1212 ; 3.814 ; 6.400 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 4.392 ; 3.970 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 983 ; 4.383 ; 3.962 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 5.161 ; 7.096 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1449 ; 5.159 ; 7.100 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1706 7.6783 92.2073 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: 0.0302 REMARK 3 T33: 0.0153 T12: -0.0104 REMARK 3 T13: 0.0043 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.6546 L22: 2.7456 REMARK 3 L33: 2.2101 L12: 0.2303 REMARK 3 L13: -0.6234 L23: -0.2006 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.2045 S13: 0.1715 REMARK 3 S21: 0.1974 S22: -0.0825 S23: 0.0104 REMARK 3 S31: 0.0181 S32: -0.1115 S33: 0.0482 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0804 2.7934 65.0852 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0427 REMARK 3 T33: 0.0429 T12: 0.0006 REMARK 3 T13: -0.0117 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.8257 L22: 2.6499 REMARK 3 L33: 4.0236 L12: 0.4133 REMARK 3 L13: -0.2656 L23: 0.0972 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.1273 S13: 0.0299 REMARK 3 S21: -0.1573 S22: 0.0747 S23: 0.2302 REMARK 3 S31: -0.1581 S32: -0.1071 S33: -0.0359 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9F5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292138198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7, XDS BUILT REMARK 200 20230630 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.13, POINTLESS REMARK 200 1.12.15, STARANISO 2.3.74 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 114.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 43.20 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 114.2 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 34.20 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 48.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 2.0.339 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM SULFATE 10MM CADMIUM REMARK 280 CHLORIDE 25% PEG SMEAR MEDIUM 100MM HEPES PH 7.5 30MM MANGANESE REMARK 280 CHLORIDE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.12400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.85750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.12400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.85750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 PRO A 46 REMARK 465 ASN A 47 REMARK 465 GLY A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLY B 43 REMARK 465 GLY B 44 REMARK 465 LEU B 45 REMARK 465 PRO B 46 REMARK 465 ASN B 47 REMARK 465 ARG B 92 REMARK 465 ARG B 93 REMARK 465 ILE B 94 REMARK 465 ARG B 95 REMARK 465 GLY B 96 REMARK 465 GLY B 97 REMARK 465 ASP B 98 REMARK 465 GLY B 99 REMARK 465 LYS B 100 REMARK 465 MET B 101 REMARK 465 LYS B 102 REMARK 465 ASP B 103 REMARK 465 LEU B 104 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 ARG B 177 REMARK 465 GLY B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 176 H ARG A 177 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NH1 - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 54.92 -90.83 REMARK 500 LYS A 143 51.09 -93.80 REMARK 500 SER A 176 -78.70 -110.84 REMARK 500 LYS B 61 50.31 -97.64 REMARK 500 LYS B 143 53.79 -94.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 68 0.08 SIDE CHAIN REMARK 500 ARG B 107 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 ND1 REMARK 620 2 ASP A 103 OD1 92.1 REMARK 620 3 ASP A 103 OD2 88.5 53.3 REMARK 620 4 SER A 105 OG 101.0 81.8 134.5 REMARK 620 5 GLU A 174 OE1 86.8 150.0 96.7 127.9 REMARK 620 6 GLU A 174 OE2 99.9 155.7 147.1 75.3 52.7 REMARK 620 7 HOH A 378 O 170.4 87.4 83.5 88.4 88.8 84.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 79 OG REMARK 620 2 ASP A 82 OD2 73.3 REMARK 620 3 ASP A 98 OD1 110.8 47.4 REMARK 620 4 ASP A 98 OD2 112.6 50.2 2.9 REMARK 620 5 HIS A 145 NE2 170.3 109.0 76.1 74.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EXB RELATED DB: PDB REMARK 900 NTD_WT REMARK 900 RELATED ID: 9F83 RELATED DB: PDB REMARK 900 NTD_D63G REMARK 900 RELATED ID: 9EZB RELATED DB: PDB REMARK 900 NTD_P67S REMARK 900 RELATED ID: 9F7A RELATED DB: PDB REMARK 900 NTD_P80R REMARK 900 RELATED ID: 9F5L RELATED DB: PDB REMARK 900 NTD_A119S REMARK 900 RELATED ID: 9EVY RELATED DB: PDB REMARK 900 NTD_E136D REMARK 900 RELATED ID: 9FBG RELATED DB: PDB REMARK 900 NTD_P151S REMARK 900 RELATED ID: 9F7C RELATED DB: PDB REMARK 900 NTD_S105I REMARK 900 RELATED ID: 9EWH RELATED DB: PDB REMARK 900 NTD_Y109A DBREF 9F5J A 44 180 UNP P0DTC9 NCAP_SARS2 44 180 DBREF 9F5J B 44 180 UNP P0DTC9 NCAP_SARS2 44 180 SEQADV 9F5J GLY A 43 UNP P0DTC9 EXPRESSION TAG SEQADV 9F5J ILE A 58 UNP P0DTC9 GLN 58 ENGINEERED MUTATION SEQADV 9F5J GLY B 43 UNP P0DTC9 EXPRESSION TAG SEQADV 9F5J ILE B 58 UNP P0DTC9 GLN 58 ENGINEERED MUTATION SEQRES 1 A 138 GLY GLY LEU PRO ASN ASN THR ALA SER TRP PHE THR ALA SEQRES 2 A 138 LEU THR ILE HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG SEQRES 3 A 138 GLY GLN GLY VAL PRO ILE ASN THR ASN SER SER PRO ASP SEQRES 4 A 138 ASP GLN ILE GLY TYR TYR ARG ARG ALA THR ARG ARG ILE SEQRES 5 A 138 ARG GLY GLY ASP GLY LYS MET LYS ASP LEU SER PRO ARG SEQRES 6 A 138 TRP TYR PHE TYR TYR LEU GLY THR GLY PRO GLU ALA GLY SEQRES 7 A 138 LEU PRO TYR GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL SEQRES 8 A 138 ALA THR GLU GLY ALA LEU ASN THR PRO LYS ASP HIS ILE SEQRES 9 A 138 GLY THR ARG ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU SEQRES 10 A 138 GLN LEU PRO GLN GLY THR THR LEU PRO LYS GLY PHE TYR SEQRES 11 A 138 ALA GLU GLY SER ARG GLY GLY SER SEQRES 1 B 138 GLY GLY LEU PRO ASN ASN THR ALA SER TRP PHE THR ALA SEQRES 2 B 138 LEU THR ILE HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG SEQRES 3 B 138 GLY GLN GLY VAL PRO ILE ASN THR ASN SER SER PRO ASP SEQRES 4 B 138 ASP GLN ILE GLY TYR TYR ARG ARG ALA THR ARG ARG ILE SEQRES 5 B 138 ARG GLY GLY ASP GLY LYS MET LYS ASP LEU SER PRO ARG SEQRES 6 B 138 TRP TYR PHE TYR TYR LEU GLY THR GLY PRO GLU ALA GLY SEQRES 7 B 138 LEU PRO TYR GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL SEQRES 8 B 138 ALA THR GLU GLY ALA LEU ASN THR PRO LYS ASP HIS ILE SEQRES 9 B 138 GLY THR ARG ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU SEQRES 10 B 138 GLN LEU PRO GLN GLY THR THR LEU PRO LYS GLY PHE TYR SEQRES 11 B 138 ALA GLU GLY SER ARG GLY GLY SER HET CD A 201 1 HET CD A 202 1 HET CD B 201 1 HET CD B 202 1 HETNAM CD CADMIUM ION FORMUL 3 CD 4(CD 2+) FORMUL 7 HOH *138(H2 O) HELIX 1 AA1 SER A 79 ASP A 82 5 4 HELIX 2 AA2 SER B 79 ASP B 82 5 4 HELIX 3 AA3 THR B 115 ALA B 119 5 5 HELIX 4 AA4 LYS B 169 GLU B 174 1 6 SHEET 1 AA1 4 LEU A 56 THR A 57 0 SHEET 2 AA1 4 ARG A 107 TYR A 112 -1 O TRP A 108 N LEU A 56 SHEET 3 AA1 4 ILE A 84 ARG A 89 -1 N TYR A 86 O TYR A 111 SHEET 4 AA1 4 ILE A 130 ALA A 134 -1 O VAL A 133 N GLY A 85 SHEET 1 AA2 4 LEU B 56 THR B 57 0 SHEET 2 AA2 4 ARG B 107 TYR B 112 -1 O TRP B 108 N LEU B 56 SHEET 3 AA2 4 ILE B 84 ARG B 89 -1 N TYR B 86 O TYR B 111 SHEET 4 AA2 4 ILE B 130 ALA B 134 -1 O VAL B 133 N GLY B 85 LINK ND1 HIS A 59 CD CD A 201 1555 1555 2.34 LINK OG SER A 79 CD CD A 202 1555 1555 2.25 LINK OD2 ASP A 82 CD CD A 202 1555 1555 2.31 LINK OD1 ASP A 98 CD CD A 202 1555 3756 2.21 LINK OD2 ASP A 98 CD CD A 202 1555 3756 2.38 LINK OD1 ASP A 103 CD CD A 201 1555 1555 2.28 LINK OD2 ASP A 103 CD CD A 201 1555 1555 2.62 LINK OG SER A 105 CD CD A 201 1555 1555 2.31 LINK NE2 HIS A 145 CD CD A 202 1555 1555 2.26 LINK OE1 GLU A 174 CD CD A 201 1555 1555 2.33 LINK OE2 GLU A 174 CD CD A 201 1555 1555 2.60 LINK CD CD A 201 O HOH A 378 1555 1555 2.46 LINK NE2 HIS B 59 CD CD B 201 1555 1555 2.22 CRYST1 47.780 49.715 114.248 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008753 0.00000