HEADER VIRUS LIKE PARTICLE 29-APR-24 9F5P TITLE POLIOVIRUS TYPE 2 (STRAIN MEF-1) STABILISED VIRUS-LIKE PARTICLE (PV2 TITLE 2 SC6B) FROM AN INSECT CELL EXPRESSION SYSTEM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAPSID PROTEIN VP0; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: VP4-VP2; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: CAPSID PROTEIN VP3; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: P1C,VIRION PROTEIN 3; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLIOVIRUS 2; SOURCE 3 ORGANISM_TAXID: 12083; SOURCE 4 STRAIN: MEF-1; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: POLIOVIRUS 2; SOURCE 9 ORGANISM_TAXID: 12083; SOURCE 10 STRAIN: MEF-1; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: POLIOVIRUS 2; SOURCE 15 ORGANISM_TAXID: 12083; SOURCE 16 STRAIN: MEF-1; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CAPSID PROTEIN, VACCINE, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.W.BAHAR,C.PORTA,E.E.FRY,D.I.STUART REVDAT 1 29-JAN-25 9F5P 0 JRNL AUTH L.SHERRY,M.W.BAHAR,C.PORTA,H.FOX,K.GREHAN,V.NASTA, JRNL AUTH 2 H.M.E.DUYVESTEYN,L.DE COLIBUS,J.MARSIAN,I.MURDOCH, JRNL AUTH 3 D.PONNDORF,S.R.KIM,S.SHAH,S.CARLYLE,J.J.SWANSON,S.MATTHEWS, JRNL AUTH 4 C.NICOL,G.P.LOMONOSSOFF,A.J.MACADAM,E.E.FRY,D.I.STUART, JRNL AUTH 5 N.J.STONEHOUSE,D.J.ROWLANDS JRNL TITL RECOMBINANT EXPRESSION SYSTEMS FOR PRODUCTION OF STABILISED JRNL TITL 2 VIRUS-LIKE PARTICLES AS NEXT-GENERATION POLIO VACCINES. JRNL REF NAT COMMUN V. 16 831 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39827284 JRNL DOI 10.1038/S41467-025-56118-Z REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, CTFFIND, UCSF CHIMERA, COOT, REMARK 3 RELION, RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1EAH REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL MODEL WAS RIGID BODY FITTED USING UCSF REMARK 3 CHIMERA AND COOT. GLOBAL MINIMIZATION AND B-FACTOR REFINEMENT REMARK 3 WAS PERFORMED IN REAL SPACE USING PHENIX_REAL.SPACE.REFINE. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 3149 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: POST-PROCESSING WAS APPLIED WITH A B-FACTOR OF REMARK 3 -52.2 A2 IN RELION. REMARK 4 REMARK 4 9F5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292138225. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : POLIOVIRUS 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : THE EXACT GRID TYPE WAS THE REMARK 245 ULTRA-THIN CARBON SUPPORT FILM, REMARK 245 3NM - ON LACEY CARBON. PRODUCT REMARK 245 CODE AGS187-4 FROM AGAR REMARK 245 SCIENTIFIC. REMARK 245 SAMPLE VITRIFICATION DETAILS : 4 UL OF SAMPLE BLOTTED FOR 3.5 REMARK 245 SECONDS WITH -15 BLOT FORCE ON REMARK 245 FEI VITROBOT MARK IV. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : RECOMBINANTLY EXPRESSED VIRUS REMARK 245 -LIKE PARTICLE OF POLIOVIRUS TYPE 2 (MEF-1 STRAIN). REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9379 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 47170 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : PRELIMINARY GRID SCREENING REMARK 245 WAS PERFORMED ON A GLACIOS 200 KV MICROSCOPE. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 180-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 420.81218 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 421.33152 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 421.65250 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -0.46080 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 421.54760 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 421.08680 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 210.70012 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 551.62007 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 80.55265 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 210.52022 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 551.73125 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 340.62888 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 551.27045 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 340.70388 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 210.90602 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 340.24308 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 210.98102 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 551.65625 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 551.05438 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 341.26957 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 210.91620 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 210.17060 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 551.51518 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 80.27803 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 340.80877 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 210.63140 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -129.96758 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 421.08680 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 421.16180 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 -0.07500 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 551.15927 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 80.62765 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 211.08592 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 420.87072 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 421.72750 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 421.19798 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 551.27045 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 80.91872 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 210.56658 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 340.24308 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 210.64158 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -130.18365 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 210.52022 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -130.10865 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 80.84372 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 420.87072 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 -0.10490 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.27462 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 421.08680 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.46080 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 421.54760 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 551.15927 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 340.99495 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 210.38668 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 421.16180 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.07500 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 421.08680 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 210.00088 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -129.99747 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 80.55265 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 -0.11118 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.29108 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 421.65250 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 210.17060 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -129.89258 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 341.19457 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 340.80877 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 210.99120 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 551.44018 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 551.05438 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 80.35303 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 210.55640 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 340.53415 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 210.46168 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 551.54507 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 -0.56570 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.34962 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 421.25652 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 421.62260 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 421.47260 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 80.16685 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 211.16092 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 551.54507 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 421.26670 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 421.27298 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 421.25652 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 420.70100 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 421.47260 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 -0.11118 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 421.33152 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 -0.17990 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 421.16180 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 421.54760 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.38580 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 210.00088 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 551.62007 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 340.91995 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 210.18078 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 551.73125 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 80.84372 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -130.56945 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 340.70388 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 210.56658 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 80.45792 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 210.98102 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -130.18365 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -130.35338 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 341.26957 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 210.55640 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 210.53040 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 551.51518 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 341.19457 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 79.89223 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 210.63140 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 551.44018 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 -0.38580 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 421.16180 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 421.54760 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -130.45827 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 80.62765 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 210.38668 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 -0.16972 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 421.72750 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.27462 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -130.56945 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 80.91872 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 210.90602 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 80.45792 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 210.64158 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 551.65625 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 210.18078 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -130.10865 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 340.62888 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 -0.16972 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 -0.10490 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 421.19798 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 -0.38580 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.46080 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 -0.07500 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -130.45827 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 340.99495 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 211.08592 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 -0.46080 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.07500 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.38580 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 210.70012 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -129.99747 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 340.91995 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 420.81218 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.29108 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 -0.17990 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 210.53040 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -129.89258 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 80.27803 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 79.89223 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 210.99120 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -129.96758 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -130.35338 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 80.35303 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 210.91620 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 80.16685 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 210.46168 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -130.07247 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 421.26670 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.34962 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.21608 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 420.70100 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 421.62260 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 340.53415 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 211.16092 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -130.07247 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 -0.56570 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 421.27298 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.21608 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 ASN A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 LYS B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 HIS B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 SER B 16 REMARK 465 ASN B 17 REMARK 465 ARG B 18 REMARK 465 ALA B 19 REMARK 465 TYR B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 THR B 24 REMARK 465 ILE B 25 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 GLN B 44 REMARK 465 ASP B 45 REMARK 465 PHE B 46 REMARK 465 ALA B 47 REMARK 465 GLN B 48 REMARK 465 ASP B 49 REMARK 465 PRO B 50 REMARK 465 SER B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 THR B 54 REMARK 465 GLU B 55 REMARK 465 PRO B 56 REMARK 465 VAL B 57 REMARK 465 LYS B 58 REMARK 465 ASP B 59 REMARK 465 VAL B 60 REMARK 465 LEU B 61 REMARK 465 ILE B 62 REMARK 465 LYS B 63 REMARK 465 THR B 64 REMARK 465 ALA B 65 REMARK 465 PRO B 66 REMARK 465 THR B 67 REMARK 465 LEU B 68 REMARK 465 ASN B 69 REMARK 465 SER B 70 REMARK 465 PRO B 71 REMARK 465 ASN B 72 REMARK 465 ILE B 73 REMARK 465 GLU B 74 REMARK 465 ALA B 75 REMARK 465 CYS B 76 REMARK 465 GLY B 77 REMARK 465 TYR B 78 REMARK 465 SER B 79 REMARK 465 MET C 236 REMARK 465 PRO C 237 REMARK 465 GLN C 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 269 O SER C 123 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 82 49.73 -85.31 REMARK 500 ALA A 96 151.82 178.72 REMARK 500 ASN A 146 49.04 -94.79 REMARK 500 PRO A 250 -9.12 -58.90 REMARK 500 CYS A 270 73.38 62.53 REMARK 500 ALA A 291 72.96 -112.22 REMARK 500 ALA B 98 53.51 -95.04 REMARK 500 ASN B 99 -164.73 62.53 REMARK 500 TYR B 104 18.43 56.29 REMARK 500 ALA B 126 -123.52 52.78 REMARK 500 SER B 251 26.09 -145.99 REMARK 500 ALA B 308 19.25 49.30 REMARK 500 SER B 311 166.54 75.57 REMARK 500 LEU C 57 39.38 -95.67 REMARK 500 THR C 196 -74.48 -98.81 REMARK 500 ARG C 197 174.88 175.81 REMARK 500 LEU C 224 67.84 62.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50199 RELATED DB: EMDB REMARK 900 POLIOVIRUS TYPE 2 (STRAIN MEF-1) STABILISED VIRUS-LIKE PARTICLE REMARK 900 (PV2 SC6B) FROM AN INSECT CELL EXPRESSION SYSTEM. DBREF 9F5P A 1 301 UNP P06210 POLG_POL2L 579 879 DBREF 9F5P B 2 340 UNP P06210 POLG_POL2L 2 340 DBREF 9F5P C 1 238 UNP P06210 POLG_POL2L 341 578 SEQADV 9F5P ILE A 107 UNP P06210 VAL 685 ENGINEERED MUTATION SEQADV 9F5P LEU A 134 UNP P06210 PHE 712 ENGINEERED MUTATION SEQADV 9F5P LEU A 183 UNP P06210 VAL 761 ENGINEERED MUTATION SEQADV 9F5P GLU A 295 UNP P06210 GLY 873 VARIANT SEQADV 9F5P MET B 1 UNP P06210 INITIATING METHIONINE SEQADV 9F5P VAL B 57 UNP P06210 ILE 57 ENGINEERED MUTATION SEQADV 9F5P ALA B 126 UNP P06210 ASP 126 ENGINEERED MUTATION SEQADV 9F5P LEU C 178 UNP P06210 GLN 518 ENGINEERED MUTATION SEQRES 1 A 301 GLY LEU GLY ASP LEU ILE GLU GLY VAL VAL GLU GLY VAL SEQRES 2 A 301 THR ARG ASN ALA LEU THR PRO LEU THR PRO ALA ASN ASN SEQRES 3 A 301 LEU PRO ASP THR GLN SER SER GLY PRO ALA HIS SER LYS SEQRES 4 A 301 GLU THR PRO ALA LEU THR ALA VAL GLU THR GLY ALA THR SEQRES 5 A 301 ASN PRO LEU VAL PRO SER ASP THR VAL GLN THR ARG HIS SEQRES 6 A 301 VAL ILE GLN LYS ARG THR ARG SER GLU SER THR VAL GLU SEQRES 7 A 301 SER PHE PHE ALA ARG GLY ALA CYS VAL ALA ILE ILE GLU SEQRES 8 A 301 VAL ASP ASN ASP ALA PRO THR LYS ARG ALA SER LYS LEU SEQRES 9 A 301 PHE SER ILE TRP LYS ILE THR TYR LYS ASP THR VAL GLN SEQRES 10 A 301 LEU ARG ARG LYS LEU GLU PHE PHE THR TYR SER ARG PHE SEQRES 11 A 301 ASP MET GLU LEU THR PHE VAL VAL THR SER ASN TYR THR SEQRES 12 A 301 ASP ALA ASN ASN GLY HIS ALA LEU ASN GLN VAL TYR GLN SEQRES 13 A 301 ILE MET TYR ILE PRO PRO GLY ALA PRO ILE PRO GLY LYS SEQRES 14 A 301 TRP ASN ASP TYR THR TRP GLN THR SER SER ASN PRO SER SEQRES 15 A 301 LEU PHE TYR THR TYR GLY ALA PRO PRO ALA ARG ILE SER SEQRES 16 A 301 VAL PRO TYR VAL GLY ILE ALA ASN ALA TYR SER HIS PHE SEQRES 17 A 301 TYR ASP GLY PHE ALA LYS VAL PRO LEU ALA GLY GLN ALA SEQRES 18 A 301 SER THR GLU GLY ASP SER LEU TYR GLY ALA ALA SER LEU SEQRES 19 A 301 ASN ASP PHE GLY SER LEU ALA VAL ARG VAL VAL ASN ASP SEQRES 20 A 301 HIS ASN PRO THR LYS LEU THR SER LYS ILE ARG VAL TYR SEQRES 21 A 301 MET LYS PRO LYS HIS VAL ARG VAL TRP CYS PRO ARG PRO SEQRES 22 A 301 PRO ARG ALA VAL PRO TYR TYR GLY PRO GLY VAL ASP TYR SEQRES 23 A 301 LYS ASP GLY LEU ALA PRO LEU PRO GLU LYS GLY LEU THR SEQRES 24 A 301 THR TYR SEQRES 1 B 340 MET GLY ALA GLN VAL SER SER GLN LYS VAL GLY ALA HIS SEQRES 2 B 340 GLU ASN SER ASN ARG ALA TYR GLY GLY SER THR ILE ASN SEQRES 3 B 340 TYR THR THR ILE ASN TYR TYR ARG ASP SER ALA SER ASN SEQRES 4 B 340 ALA ALA SER LYS GLN ASP PHE ALA GLN ASP PRO SER LYS SEQRES 5 B 340 PHE THR GLU PRO VAL LYS ASP VAL LEU ILE LYS THR ALA SEQRES 6 B 340 PRO THR LEU ASN SER PRO ASN ILE GLU ALA CYS GLY TYR SEQRES 7 B 340 SER ASP ARG VAL MET GLN LEU THR LEU GLY ASN SER THR SEQRES 8 B 340 ILE THR THR GLN GLU ALA ALA ASN SER VAL VAL ALA TYR SEQRES 9 B 340 GLY ARG TRP PRO GLU TYR ILE LYS ASP SER GLU ALA ASN SEQRES 10 B 340 PRO VAL ASP GLN PRO THR GLU PRO ALA VAL ALA ALA CYS SEQRES 11 B 340 ARG PHE TYR THR LEU ASP THR VAL THR TRP ARG LYS GLU SEQRES 12 B 340 SER ARG GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU LYS SEQRES 13 B 340 ASP MET GLY LEU PHE GLY GLN ASN MET PHE TYR HIS TYR SEQRES 14 B 340 LEU GLY ARG ALA GLY TYR THR VAL HIS VAL GLN CYS ASN SEQRES 15 B 340 ALA SER LYS PHE HIS GLN GLY ALA LEU GLY VAL PHE ALA SEQRES 16 B 340 VAL PRO GLU MET CYS LEU ALA GLY ASP SER THR THR HIS SEQRES 17 B 340 MET PHE THR LYS TYR GLU ASN ALA ASN PRO GLY GLU LYS SEQRES 18 B 340 GLY GLY GLU PHE LYS GLY SER PHE THR LEU ASP THR ASN SEQRES 19 B 340 ALA THR ASN PRO ALA ARG ASN PHE CYS PRO VAL ASP TYR SEQRES 20 B 340 LEU PHE GLY SER GLY VAL LEU ALA GLY ASN ALA PHE VAL SEQRES 21 B 340 TYR PRO HIS GLN ILE ILE ASN LEU ARG THR ASN ASN CYS SEQRES 22 B 340 ALA THR LEU VAL LEU PRO TYR VAL ASN SER LEU SER ILE SEQRES 23 B 340 ASP SER MET THR LYS HIS ASN ASN TRP GLY ILE ALA ILE SEQRES 24 B 340 LEU PRO LEU ALA PRO LEU ASP PHE ALA THR GLU SER SER SEQRES 25 B 340 THR GLU ILE PRO ILE THR LEU THR ILE ALA PRO MET CYS SEQRES 26 B 340 CYS GLU PHE ASN GLY LEU ARG ASN ILE THR VAL PRO ARG SEQRES 27 B 340 THR GLN SEQRES 1 C 238 GLY LEU PRO VAL LEU ASN THR PRO GLY SER ASN GLN TYR SEQRES 2 C 238 LEU THR ALA ASP ASN TYR GLN SER PRO CYS ALA ILE PRO SEQRES 3 C 238 GLU PHE ASP VAL THR PRO PRO ILE ASP ILE PRO GLY GLU SEQRES 4 C 238 VAL ARG ASN MET MET GLU LEU ALA GLU ILE ASP THR MET SEQRES 5 C 238 ILE PRO LEU ASN LEU THR ASN GLN ARG LYS ASN THR MET SEQRES 6 C 238 ASP MET TYR ARG VAL GLU LEU ASN ASP ALA ALA HIS SER SEQRES 7 C 238 ASP THR PRO ILE LEU CYS LEU SER LEU SER PRO ALA SER SEQRES 8 C 238 ASP PRO ARG LEU ALA HIS THR MET LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR THR HIS TRP ALA GLY SER LEU LYS PHE THR SEQRES 10 C 238 PHE LEU PHE CYS GLY SER MET MET ALA THR GLY LYS LEU SEQRES 11 C 238 LEU VAL SER TYR ALA PRO PRO GLY ALA GLU ALA PRO LYS SEQRES 12 C 238 SER ARG LYS GLU ALA MET LEU GLY THR HIS VAL ILE TRP SEQRES 13 C 238 ASP ILE GLY LEU GLN SER SER CYS THR MET VAL VAL PRO SEQRES 14 C 238 TRP ILE SER ASN THR THR TYR ARG LEU THR ILE ASN ASP SEQRES 15 C 238 SER PHE THR GLU GLY GLY TYR ILE SER MET PHE TYR GLN SEQRES 16 C 238 THR ARG VAL VAL VAL PRO LEU SER THR PRO ARG LYS MET SEQRES 17 C 238 ASP ILE LEU GLY PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU ARG ASP THR THR HIS ILE SER GLN GLU SEQRES 19 C 238 ALA MET PRO GLN HET SPH A 401 21 HETNAM SPH SPHINGOSINE FORMUL 4 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 46 GLY A 50 5 5 HELIX 2 AA2 VAL A 56 VAL A 61 1 6 HELIX 3 AA3 ARG A 72 SER A 75 5 4 HELIX 4 AA4 THR A 76 ALA A 82 1 7 HELIX 5 AA5 VAL A 116 GLU A 123 1 8 HELIX 6 AA6 ASP A 172 THR A 177 5 6 HELIX 7 AA7 ALA A 232 ASP A 236 5 5 HELIX 8 AA8 ASP B 35 ASN B 39 5 5 HELIX 9 AA9 TYR B 104 ARG B 106 5 3 HELIX 10 AB1 LYS B 112 ALA B 116 5 5 HELIX 11 AB2 PRO B 125 ALA B 129 5 5 HELIX 12 AB3 PRO B 152 LYS B 156 5 5 HELIX 13 AB4 MET B 158 TYR B 167 1 10 HELIX 14 AB5 LYS B 212 ASN B 217 1 6 HELIX 15 AB6 LEU B 254 TYR B 261 5 8 HELIX 16 AB7 ASN C 42 GLU C 48 1 7 HELIX 17 AB8 THR C 64 MET C 67 5 4 HELIX 18 AB9 ASP C 92 HIS C 97 1 6 HELIX 19 AC1 THR C 98 ASN C 105 1 8 HELIX 20 AC2 SER C 144 MET C 149 1 6 SHEET 1 AA1 5 LEU A 44 THR A 45 0 SHEET 2 AA1 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 45 SHEET 3 AA1 5 LEU C 114 PHE C 120 -1 N PHE C 116 O MET C 166 SHEET 4 AA1 5 LYS C 207 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA1 5 THR C 51 MET C 52 -1 N THR C 51 O VAL C 214 SHEET 1 AA2 5 LEU A 44 THR A 45 0 SHEET 2 AA2 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 45 SHEET 3 AA2 5 LEU C 114 PHE C 120 -1 N PHE C 116 O MET C 166 SHEET 4 AA2 5 LYS C 207 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA2 5 ARG C 69 ASN C 73 -1 N VAL C 70 O ILE C 210 SHEET 1 AA3 4 ALA A 85 ASN A 94 0 SHEET 2 AA3 4 LEU A 253 PRO A 271 -1 O VAL A 259 N VAL A 87 SHEET 3 AA3 4 PHE A 125 TYR A 142 -1 N THR A 135 O TYR A 260 SHEET 4 AA3 4 TYR A 205 SER A 206 -1 O TYR A 205 N SER A 128 SHEET 1 AA4 4 ALA A 192 VAL A 196 0 SHEET 2 AA4 4 PHE A 125 TYR A 142 -1 N MET A 132 O VAL A 196 SHEET 3 AA4 4 LEU A 253 PRO A 271 -1 O TYR A 260 N THR A 135 SHEET 4 AA4 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 268 SHEET 1 AA5 4 PHE A 105 LYS A 109 0 SHEET 2 AA5 4 SER A 239 VAL A 244 -1 O VAL A 242 N SER A 106 SHEET 3 AA5 4 VAL A 154 ILE A 160 -1 N MET A 158 O ALA A 241 SHEET 4 AA5 4 SER A 182 THR A 186 -1 O TYR A 185 N TYR A 155 SHEET 1 AA6 2 MET B 83 LEU B 87 0 SHEET 2 AA6 2 SER B 90 THR B 94 -1 O THR B 94 N MET B 83 SHEET 1 AA7 5 VAL B 101 VAL B 102 0 SHEET 2 AA7 5 CYS B 273 LEU B 278 1 O VAL B 277 N VAL B 101 SHEET 3 AA7 5 HIS B 168 GLN B 180 -1 N VAL B 177 O LEU B 276 SHEET 4 AA7 5 ILE B 315 LEU B 331 -1 O ASN B 329 N LEU B 170 SHEET 5 AA7 5 TYR B 133 THR B 134 -1 N TYR B 133 O ILE B 321 SHEET 1 AA8 5 VAL B 101 VAL B 102 0 SHEET 2 AA8 5 CYS B 273 LEU B 278 1 O VAL B 277 N VAL B 101 SHEET 3 AA8 5 HIS B 168 GLN B 180 -1 N VAL B 177 O LEU B 276 SHEET 4 AA8 5 ILE B 315 LEU B 331 -1 O ASN B 329 N LEU B 170 SHEET 5 AA8 5 VAL B 138 TRP B 140 -1 N TRP B 140 O ILE B 315 SHEET 1 AA9 5 GLY B 223 GLU B 224 0 SHEET 2 AA9 5 TRP B 147 LEU B 151 -1 N TRP B 148 O GLY B 223 SHEET 3 AA9 5 TRP B 295 PHE B 307 -1 O ILE B 299 N TRP B 147 SHEET 4 AA9 5 HIS B 187 PRO B 197 -1 N PHE B 194 O ALA B 298 SHEET 5 AA9 5 HIS B 263 ASN B 267 -1 O GLN B 264 N VAL B 193 SHEET 1 AB1 4 LEU C 83 SER C 86 0 SHEET 2 AB1 4 TYR C 189 VAL C 199 -1 O ILE C 190 N LEU C 85 SHEET 3 AB1 4 THR C 127 ALA C 135 -1 N THR C 127 O VAL C 199 SHEET 4 AB1 4 THR C 152 ILE C 158 -1 O ILE C 158 N GLY C 128 SHEET 1 AB2 3 ARG C 177 LEU C 178 0 SHEET 2 AB2 3 TYR C 107 ALA C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB2 3 SER C 221 LEU C 225 -1 O ARG C 223 N HIS C 109 CISPEP 1 LEU B 151 PRO B 152 0 9.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000