HEADER SUGAR BINDING PROTEIN 05-MAY-24 9F7V TITLE N-ACETYLGLUCOSAMINE 6-PHOSPHATE DEHYDRATASE: GLCNAC6P SUBSTRATE-BOUND TITLE 2 STATE OF NAGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0309 PROTEIN SCO4393; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: SCO4393, SCD10.25C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENTRAL METABOLISM; AMINOSUGAR DEHYDRATASE; GLCNAC-6P; AMINOSUGAR KEYWDS 2 TOXICITY, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.ABRAHAMS,C.LI REVDAT 1 19-FEB-25 9F7V 0 JRNL AUTH C.LI,M.UREM,I.KOTSOGIANNI,J.LAU,S.S.ELSAYED,N.I.MARTIN, JRNL AUTH 2 I.W.MCNAE,P.VOSKAMP,C.MAYER,S.RIGALI,N.PANNU,J.P.ABRAHAMS, JRNL AUTH 3 L.SCHADA VON BORZYSKOWSKI,G.P.VAN WEZEL JRNL TITL A NEW PATHWAY IN CENTRAL METABOLISM MEDIATES NUTRIENT JRNL TITL 2 CONTROL OF DEVELOPMENT AND ANTIBIOTIC PRODUCTION BY JRNL TITL 3 STREPTOMYCES JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2024.07.14.603434 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6600 - 5.1800 1.00 2787 140 0.1865 0.2448 REMARK 3 2 5.1800 - 4.1100 1.00 2598 129 0.1521 0.1734 REMARK 3 3 4.1100 - 3.5900 1.00 2540 132 0.1676 0.2016 REMARK 3 4 3.5900 - 3.2700 1.00 2475 155 0.1898 0.2297 REMARK 3 5 3.2600 - 3.0300 1.00 2480 146 0.2295 0.2723 REMARK 3 6 3.0300 - 2.8500 1.00 2458 146 0.2374 0.2424 REMARK 3 7 2.8500 - 2.7100 1.00 2499 122 0.2500 0.2727 REMARK 3 8 2.7100 - 2.5900 0.99 2427 128 0.2801 0.3367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.328 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3726 REMARK 3 ANGLE : 0.628 5080 REMARK 3 CHIRALITY : 0.044 616 REMARK 3 PLANARITY : 0.008 662 REMARK 3 DIHEDRAL : 12.790 1360 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4202 -50.7398 -22.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.4780 T22: 0.5916 REMARK 3 T33: 0.6043 T12: -0.2052 REMARK 3 T13: -0.0338 T23: 0.1976 REMARK 3 L TENSOR REMARK 3 L11: 5.4800 L22: 2.4057 REMARK 3 L33: 3.9675 L12: -1.6259 REMARK 3 L13: -4.2231 L23: 0.1369 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: 0.1811 S13: -0.7621 REMARK 3 S21: -0.5527 S22: 0.1763 S23: 0.5307 REMARK 3 S31: 0.5795 S32: -0.6900 S33: 0.2247 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2049 -32.3800 -13.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.4081 T22: 0.4981 REMARK 3 T33: 0.4452 T12: 0.0159 REMARK 3 T13: -0.0161 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 1.3104 L22: 0.8653 REMARK 3 L33: 0.9141 L12: 0.3626 REMARK 3 L13: 0.4702 L23: -0.3797 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.2796 S13: -0.0294 REMARK 3 S21: 0.0229 S22: 0.0009 S23: -0.0447 REMARK 3 S31: -0.0187 S32: -0.1079 S33: 0.0734 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9708 -33.9489 -7.0937 REMARK 3 T TENSOR REMARK 3 T11: 0.5202 T22: 0.6161 REMARK 3 T33: 0.4264 T12: 0.0873 REMARK 3 T13: -0.0797 T23: 0.0821 REMARK 3 L TENSOR REMARK 3 L11: 3.2412 L22: 0.5568 REMARK 3 L33: 0.5780 L12: -0.6716 REMARK 3 L13: -0.5117 L23: -0.2217 REMARK 3 S TENSOR REMARK 3 S11: -0.3159 S12: -0.3262 S13: -0.0170 REMARK 3 S21: -0.0053 S22: 0.2444 S23: 0.3584 REMARK 3 S31: -0.0998 S32: 0.0273 S33: -0.4780 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 152) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7712 -39.4779 -3.8994 REMARK 3 T TENSOR REMARK 3 T11: 0.4998 T22: 0.7017 REMARK 3 T33: 0.5700 T12: 0.0038 REMARK 3 T13: 0.0151 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 1.3100 L22: 0.7602 REMARK 3 L33: 0.4467 L12: -0.8416 REMARK 3 L13: -0.2516 L23: 0.2595 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: -0.7015 S13: -0.0372 REMARK 3 S21: 0.5255 S22: -0.0973 S23: -0.1083 REMARK 3 S31: 0.0336 S32: -0.2039 S33: -0.5370 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0910 -40.1977 -14.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.3902 T22: 0.5139 REMARK 3 T33: 0.4557 T12: 0.0217 REMARK 3 T13: 0.0080 T23: 0.1040 REMARK 3 L TENSOR REMARK 3 L11: 1.1769 L22: 1.3610 REMARK 3 L33: 2.9603 L12: 0.9345 REMARK 3 L13: 0.4144 L23: -0.3527 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.2637 S13: -0.2360 REMARK 3 S21: -0.1917 S22: 0.2088 S23: 0.1703 REMARK 3 S31: 0.2073 S32: -0.3626 S33: -0.0662 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1967 -15.3143 -19.1364 REMARK 3 T TENSOR REMARK 3 T11: 0.6318 T22: 0.4729 REMARK 3 T33: 0.7129 T12: 0.1165 REMARK 3 T13: -0.0477 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.4932 L22: 2.4170 REMARK 3 L33: 1.4033 L12: 0.5833 REMARK 3 L13: -1.9406 L23: -0.7534 REMARK 3 S TENSOR REMARK 3 S11: -0.2460 S12: 0.0063 S13: 0.8247 REMARK 3 S21: 0.1551 S22: 0.0084 S23: 0.9761 REMARK 3 S31: -0.7068 S32: -0.4581 S33: -0.3039 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6748 -66.9650 18.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.9522 REMARK 3 T33: 0.8508 T12: 0.7473 REMARK 3 T13: 0.4034 T23: 0.2446 REMARK 3 L TENSOR REMARK 3 L11: 0.2926 L22: 0.0367 REMARK 3 L33: 0.4720 L12: -0.0167 REMARK 3 L13: -0.1217 L23: -0.1110 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: -0.0071 S13: -0.1799 REMARK 3 S21: -0.0237 S22: -0.1004 S23: -0.3148 REMARK 3 S31: 0.3350 S32: 0.5428 S33: -0.4704 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9275 -45.0335 20.9023 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.6579 REMARK 3 T33: 0.5131 T12: 0.0370 REMARK 3 T13: 0.0199 T23: 0.1609 REMARK 3 L TENSOR REMARK 3 L11: 0.3823 L22: 0.1221 REMARK 3 L33: 0.4081 L12: -0.1264 REMARK 3 L13: -0.3431 L23: -0.1404 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: 0.1075 S13: -0.0259 REMARK 3 S21: 0.0578 S22: -0.1661 S23: -0.0677 REMARK 3 S31: 0.0720 S32: 0.4375 S33: -0.0089 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1426 -41.3617 16.3462 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.7533 REMARK 3 T33: 0.7013 T12: -0.0560 REMARK 3 T13: -0.0476 T23: 0.1629 REMARK 3 L TENSOR REMARK 3 L11: 0.0369 L22: 0.1568 REMARK 3 L33: 0.2997 L12: 0.0664 REMARK 3 L13: -0.1004 L23: -0.1597 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: -0.0554 S13: -0.0823 REMARK 3 S21: 0.0731 S22: -0.4048 S23: -0.1781 REMARK 3 S31: 0.1836 S32: 0.5063 S33: -0.0117 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9130 -42.5372 10.6498 REMARK 3 T TENSOR REMARK 3 T11: 0.3833 T22: 0.7622 REMARK 3 T33: 0.5799 T12: 0.0055 REMARK 3 T13: 0.0043 T23: 0.2425 REMARK 3 L TENSOR REMARK 3 L11: 0.2772 L22: 0.6560 REMARK 3 L33: 0.1236 L12: -0.1476 REMARK 3 L13: -0.0009 L23: -0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.2492 S12: 0.8584 S13: 0.4383 REMARK 3 S21: -0.5730 S22: -0.6014 S23: -0.1822 REMARK 3 S31: -0.2781 S32: 0.6706 S33: -0.0428 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0673 -52.8056 19.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.4029 T22: 0.8454 REMARK 3 T33: 0.4812 T12: 0.1193 REMARK 3 T13: 0.0755 T23: 0.1826 REMARK 3 L TENSOR REMARK 3 L11: 0.5881 L22: 0.5878 REMARK 3 L33: 0.6479 L12: -0.3239 REMARK 3 L13: -0.1626 L23: -0.2607 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: 0.0013 S13: 0.0702 REMARK 3 S21: -0.0580 S22: -0.2910 S23: -0.1491 REMARK 3 S31: 0.3659 S32: 0.9688 S33: -0.1026 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0110 -39.9155 39.2326 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.7954 REMARK 3 T33: 0.5886 T12: -0.0604 REMARK 3 T13: -0.0701 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.0498 L22: 0.0356 REMARK 3 L33: 0.0855 L12: 0.0108 REMARK 3 L13: -0.0546 L23: -0.0285 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.7864 S13: 0.1832 REMARK 3 S21: 0.3855 S22: 0.4044 S23: 0.1781 REMARK 3 S31: -0.1390 S32: 0.0119 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9F7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292137210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21362 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.5; AFTER CRYSTALLOSATION, CRYSTALS WERE SOAKED IN REMARK 280 MOTHER LIQUOR WITH 10-20% GLYCEROL AS CRYOPROTECTANT, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 189.63667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.81833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.22750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.40917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 237.04583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 189.63667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 94.81833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.40917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 142.22750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 237.04583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 44.18300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -76.52720 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -47.40917 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -44.18300 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -76.52720 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.40917 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 441 O HOH A 461 1.90 REMARK 500 O1 16G A 302 O HOH A 401 2.06 REMARK 500 O HOH A 443 O HOH A 475 2.06 REMARK 500 O HOH A 464 O HOH A 467 2.08 REMARK 500 O HOH A 407 O HOH A 426 2.09 REMARK 500 O ARG A 251 O HOH A 402 2.13 REMARK 500 O VAL A 170 O HOH A 403 2.14 REMARK 500 O HOH B 414 O HOH B 425 2.14 REMARK 500 O HOH A 434 O HOH A 436 2.14 REMARK 500 O HOH A 415 O HOH A 473 2.15 REMARK 500 O HOH A 471 O HOH A 477 2.16 REMARK 500 O HOH A 450 O HOH A 472 2.16 REMARK 500 OD1 ASP A 97 O HOH A 404 2.17 REMARK 500 OE2 GLU B 94 O HOH B 401 2.18 REMARK 500 ND1 HIS B 233 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 174 -26.01 73.14 REMARK 500 ALA A 192 85.11 88.49 REMARK 500 LYS B 174 -18.76 74.30 REMARK 500 ALA B 180 119.69 -161.09 REMARK 500 ALA B 192 82.47 84.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 7.87 ANGSTROMS DBREF 9F7V A 1 251 UNP Q9K3V1 Y4393_STRCO 1 251 DBREF 9F7V B 1 251 UNP Q9K3V1 Y4393_STRCO 1 251 SEQRES 1 A 251 MET SER ASP HIS LYS PRO ALA GLY GLN PHE LEU ASP ALA SEQRES 2 A 251 ALA ILE ASP LEU LEU ARG ARG VAL ARG ASP GLU GLU ALA SEQRES 3 A 251 ASP SER ILE GLU ALA ALA GLY THR LEU LEU ALA ASP THR SEQRES 4 A 251 VAL GLN ASN GLY GLY ARG LEU PHE ALA PHE GLY ALA GLY SEQRES 5 A 251 HIS SER SER LEU ALA ALA GLN ASP VAL VAL TYR ARG ALA SEQRES 6 A 251 GLY GLY LEU ALA LEU MET ASN LEU LEU THR VAL PRO GLY SEQRES 7 A 251 VAL VAL GLY ILE ASP VAL MET PRO ALA THR LEU GLY SER SEQRES 8 A 251 ALA LEU GLU ARG VAL ASP GLY LEU ALA SER ALA VAL LEU SEQRES 9 A 251 ASP SER SER PRO LEU ARG ALA GLY ASP ALA LEU VAL ILE SEQRES 10 A 251 ILE SER LEU SER GLY ARG ASN ALA LEU PRO VAL GLU MET SEQRES 11 A 251 ALA MET HIS ALA ARG ALA LEU GLY LEU ARG VAL ILE GLY SEQRES 12 A 251 VAL THR SER VAL ALA TYR ALA SER GLN THR THR SER ARG SEQRES 13 A 251 HIS ALA SER GLY THR PHE LEU LYS ASP HIS CYS ASP ILE SEQRES 14 A 251 VAL LEU ASP SER LYS ILE ALA VAL GLY ASP ALA GLU LEU SEQRES 15 A 251 THR LEU ASP THR VAL PRO ALA PRO PHE ALA PRO ALA SER SEQRES 16 A 251 THR VAL VAL THR ALA ALA LEU MET GLN ALA VAL THR ALA SEQRES 17 A 251 THR ALA ALA ALA THR LEU ALA ASP ARG GLY ILE GLU PRO SEQRES 18 A 251 PRO LEU LEU ARG SER GLY ASN VAL ASP GLY GLY HIS GLU SEQRES 19 A 251 TRP ASN ALA ARG VAL LEU GLU GLN TYR GLY GLU ARG ILE SEQRES 20 A 251 PHE TYR ARG ARG SEQRES 1 B 251 MET SER ASP HIS LYS PRO ALA GLY GLN PHE LEU ASP ALA SEQRES 2 B 251 ALA ILE ASP LEU LEU ARG ARG VAL ARG ASP GLU GLU ALA SEQRES 3 B 251 ASP SER ILE GLU ALA ALA GLY THR LEU LEU ALA ASP THR SEQRES 4 B 251 VAL GLN ASN GLY GLY ARG LEU PHE ALA PHE GLY ALA GLY SEQRES 5 B 251 HIS SER SER LEU ALA ALA GLN ASP VAL VAL TYR ARG ALA SEQRES 6 B 251 GLY GLY LEU ALA LEU MET ASN LEU LEU THR VAL PRO GLY SEQRES 7 B 251 VAL VAL GLY ILE ASP VAL MET PRO ALA THR LEU GLY SER SEQRES 8 B 251 ALA LEU GLU ARG VAL ASP GLY LEU ALA SER ALA VAL LEU SEQRES 9 B 251 ASP SER SER PRO LEU ARG ALA GLY ASP ALA LEU VAL ILE SEQRES 10 B 251 ILE SER LEU SER GLY ARG ASN ALA LEU PRO VAL GLU MET SEQRES 11 B 251 ALA MET HIS ALA ARG ALA LEU GLY LEU ARG VAL ILE GLY SEQRES 12 B 251 VAL THR SER VAL ALA TYR ALA SER GLN THR THR SER ARG SEQRES 13 B 251 HIS ALA SER GLY THR PHE LEU LYS ASP HIS CYS ASP ILE SEQRES 14 B 251 VAL LEU ASP SER LYS ILE ALA VAL GLY ASP ALA GLU LEU SEQRES 15 B 251 THR LEU ASP THR VAL PRO ALA PRO PHE ALA PRO ALA SER SEQRES 16 B 251 THR VAL VAL THR ALA ALA LEU MET GLN ALA VAL THR ALA SEQRES 17 B 251 THR ALA ALA ALA THR LEU ALA ASP ARG GLY ILE GLU PRO SEQRES 18 B 251 PRO LEU LEU ARG SER GLY ASN VAL ASP GLY GLY HIS GLU SEQRES 19 B 251 TRP ASN ALA ARG VAL LEU GLU GLN TYR GLY GLU ARG ILE SEQRES 20 B 251 PHE TYR ARG ARG HET SO4 A 301 5 HET 16G A 302 33 HET SO4 B 301 5 HET 16G B 302 33 HETNAM SO4 SULFATE ION HETNAM 16G 2-ACETAMIDO-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETSYN 16G N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE; N-ACETYL-6-O- HETSYN 2 16G PHOSPHONO-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-6- HETSYN 3 16G O-PHOSPHONO-ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-6-O- HETSYN 4 16G PHOSPHONO-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-6-O- HETSYN 5 16G PHOSPHONO-GLUCOSE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 16G 2(C8 H16 N O9 P) FORMUL 7 HOH *116(H2 O) HELIX 1 AA1 LYS A 5 GLU A 25 1 21 HELIX 2 AA2 GLU A 25 ASN A 42 1 18 HELIX 3 AA3 HIS A 53 ASP A 60 1 8 HELIX 4 AA4 PRO A 86 GLU A 94 1 9 HELIX 5 AA5 GLY A 98 SER A 107 1 10 HELIX 6 AA6 ASN A 124 LEU A 137 1 14 HELIX 7 AA7 VAL A 147 THR A 153 1 7 HELIX 8 AA8 PHE A 162 CYS A 167 5 6 HELIX 9 AA9 ALA A 194 ARG A 217 1 24 HELIX 10 AB1 GLY A 231 TYR A 243 1 13 HELIX 11 AB2 GLY A 244 ILE A 247 5 4 HELIX 12 AB3 LYS B 5 GLU B 25 1 21 HELIX 13 AB4 GLU B 25 ASN B 42 1 18 HELIX 14 AB5 SER B 54 ASP B 60 1 7 HELIX 15 AB6 ALA B 87 GLU B 94 1 8 HELIX 16 AB7 GLY B 98 SER B 107 1 10 HELIX 17 AB8 ASN B 124 LEU B 137 1 14 HELIX 18 AB9 VAL B 147 THR B 153 1 7 HELIX 19 AC1 PHE B 162 CYS B 167 5 6 HELIX 20 AC2 ALA B 194 ARG B 217 1 24 HELIX 21 AC3 GLY B 231 TYR B 243 1 13 HELIX 22 AC4 GLY B 244 ILE B 247 5 4 SHEET 1 AA1 5 MET A 71 LEU A 73 0 SHEET 2 AA1 5 LEU A 46 GLY A 50 1 N ALA A 48 O ASN A 72 SHEET 3 AA1 5 ALA A 114 ILE A 118 1 O ILE A 118 N PHE A 49 SHEET 4 AA1 5 ARG A 140 THR A 145 1 O ILE A 142 N ILE A 117 SHEET 5 AA1 5 ILE A 169 ASP A 172 1 O LEU A 171 N GLY A 143 SHEET 1 AA2 2 LEU A 182 LEU A 184 0 SHEET 2 AA2 2 VAL A 187 PHE A 191 -1 O PHE A 191 N LEU A 182 SHEET 1 AA3 5 MET B 71 LEU B 73 0 SHEET 2 AA3 5 LEU B 46 GLY B 50 1 N LEU B 46 O ASN B 72 SHEET 3 AA3 5 ALA B 114 ILE B 118 1 O ILE B 118 N PHE B 49 SHEET 4 AA3 5 ARG B 140 THR B 145 1 O ILE B 142 N ILE B 117 SHEET 5 AA3 5 ILE B 169 ASP B 172 1 O LEU B 171 N GLY B 143 CISPEP 1 MET A 85 PRO A 86 0 -7.71 CISPEP 2 MET B 85 PRO B 86 0 -8.06 CRYST1 88.366 88.366 284.455 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011317 0.006534 0.000000 0.00000 SCALE2 0.000000 0.013067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003515 0.00000