HEADER TRANSCRIPTION 06-MAY-24 9F80 TITLE CRYSTAL STRUCTURE OF RV2242 REGULATOR C-TERMINAL FRAGMENT (161-414) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN RV2242; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: RV2242, MTCY427.23; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS HELIX-TURN-HELIX, PUCR FAMILY, TRANSCRIPTION, TUBERCULOSIS, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.MEGALIZZI,A.TANINA,C.GROSSE,M.MIRGAUX,P.LEGRAND,G.DIAS MIRANDELA, AUTHOR 2 A.WOHLKONIG,P.BIFANI,R.WINTJENS REVDAT 1 18-DEC-24 9F80 0 JRNL AUTH V.MEGALIZZI,A.TANINA,C.GROSSE,M.MIRGAUX,P.LEGRAND, JRNL AUTH 2 G.DIAS MIRANDELA,A.WOHLKONIG,P.BIFANI,R.WINTJENS JRNL TITL DOMAIN ARCHITECTURE OF THE MYCOBACTERIUM TUBERCULOSIS MABR ( JRNL TITL 2 RV2242 ), A MEMBER OF THE PUCR TRANSCRIPTION FACTOR FAMILY. JRNL REF HELIYON V. 10 40494 2024 JRNL REFN ESSN 2405-8440 JRNL PMID 39641026 JRNL DOI 10.1016/J.HELIYON.2024.E40494 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.003 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1453 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99500 REMARK 3 B22 (A**2) : -0.83400 REMARK 3 B33 (A**2) : -1.16100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1829 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1754 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2501 ; 2.207 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4017 ; 0.703 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 7.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 19 ;15.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;17.098 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2212 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 400 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 435 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 67 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 934 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 66 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 971 ; 6.459 ; 5.090 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 970 ; 6.448 ; 5.090 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 8.033 ; 9.079 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1210 ; 8.045 ; 9.084 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 858 ; 7.976 ; 5.632 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 859 ; 7.972 ; 5.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1292 ;10.500 ;10.031 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1293 ;10.496 ;10.030 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9F80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292138371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190315 REMARK 200 DATA SCALING SOFTWARE : XDS 20190315 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.027 REMARK 200 RESOLUTION RANGE LOW (A) : 48.378 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD 2016/1, PHASER 2.8.3, MOLREP 11.7.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM HEPES, PH7.5, 400 MM NACL, 5% REMARK 280 GLYCEROL, 5 MM BETA-MERCAPTOETHANOL, 400 MM IMIDAZOLE, REMARK 280 TEMPERATURE 277K, SLOW COOLING REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.52000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.64000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.52000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.64000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.76000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.52000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.64000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.76000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.52000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.64000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 SER A 150 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 LEU A 153 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 ARG A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 HIS A 159 REMARK 465 MET A 160 REMARK 465 ALA A 161 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 THR A 164 REMARK 465 GLY A 214 REMARK 465 SER A 215 REMARK 465 TYR A 410 REMARK 465 PRO A 411 REMARK 465 THR A 412 REMARK 465 PRO A 413 REMARK 465 HIS A 414 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 ASN A 216 CG OD1 ND2 REMARK 470 ASP A 218 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 244 CG HIS A 244 CD2 0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET A 298 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 376 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 376 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 381 CG - CD - NE ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 181 71.19 -104.29 REMARK 500 THR A 182 58.82 -117.58 REMARK 500 VAL A 336 -54.12 -124.89 REMARK 500 LEU A 408 64.29 -103.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 189 0.07 SIDE CHAIN REMARK 500 ARG A 229 0.10 SIDE CHAIN REMARK 500 ARG A 237 0.19 SIDE CHAIN REMARK 500 ARG A 366 0.15 SIDE CHAIN REMARK 500 ARG A 381 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 202 OG1 REMARK 620 2 VAL A 252 O 106.8 REMARK 620 3 GLY A 254 O 118.1 126.7 REMARK 620 N 1 2 DBREF 9F80 A 161 414 UNP P9WPH5 Y2242_MYCTU 161 414 SEQADV 9F80 MET A 140 UNP P9WPH5 INITIATING METHIONINE SEQADV 9F80 GLY A 141 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 SER A 142 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 SER A 143 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 144 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 145 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 146 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 147 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 148 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 149 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 SER A 150 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 SER A 151 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 GLY A 152 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 LEU A 153 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 VAL A 154 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 PRO A 155 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 ARG A 156 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 GLY A 157 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 SER A 158 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 HIS A 159 UNP P9WPH5 EXPRESSION TAG SEQADV 9F80 MET A 160 UNP P9WPH5 EXPRESSION TAG SEQRES 1 A 275 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 275 LEU VAL PRO ARG GLY SER HIS MET ALA ARG GLY THR TRP SEQRES 3 A 275 ASP SER ARG MET GLU ALA SER VAL VAL ASP ALA VAL VAL SEQRES 4 A 275 ARG GLY ASP THR GLY PRO GLU LEU LEU SER ARG ALA ALA SEQRES 5 A 275 ALA LEU ASN TRP ASP THR THR ALA PRO ALA THR VAL LEU SEQRES 6 A 275 VAL GLY THR PRO ALA PRO GLY PRO ASN GLY SER ASN SER SEQRES 7 A 275 ASP GLY ASP SER GLU ARG ALA SER GLN ASP VAL ARG ASP SEQRES 8 A 275 THR ALA ALA ARG HIS GLY ARG ALA ALA LEU THR ASP VAL SEQRES 9 A 275 HIS GLY THR TRP LEU VAL ALA ILE VAL SER GLY GLN LEU SEQRES 10 A 275 SER PRO THR GLU LYS PHE LEU LYS ASP LEU LEU ALA ALA SEQRES 11 A 275 PHE ALA ASP ALA PRO VAL VAL ILE GLY PRO THR ALA PRO SEQRES 12 A 275 MET LEU THR ALA ALA HIS ARG SER ALA SER GLU ALA ILE SEQRES 13 A 275 SER GLY MET ASN ALA VAL ALA GLY TRP ARG GLY ALA PRO SEQRES 14 A 275 ARG PRO VAL LEU ALA ARG GLU LEU LEU PRO GLU ARG ALA SEQRES 15 A 275 LEU MET GLY ASP ALA SER ALA ILE VAL ALA LEU HIS THR SEQRES 16 A 275 ASP VAL MET ARG PRO LEU ALA ASP ALA GLY PRO THR LEU SEQRES 17 A 275 ILE GLU THR LEU ASP ALA TYR LEU ASP CYS GLY GLY ALA SEQRES 18 A 275 ILE GLU ALA CYS ALA ARG LYS LEU PHE VAL HIS PRO ASN SEQRES 19 A 275 THR VAL ARG TYR ARG LEU LYS ARG ILE THR ASP PHE THR SEQRES 20 A 275 GLY ARG ASP PRO THR GLN PRO ARG ASP ALA TYR VAL LEU SEQRES 21 A 275 ARG VAL ALA ALA THR VAL GLY GLN LEU ASN TYR PRO THR SEQRES 22 A 275 PRO HIS HET TRS A 501 8 HET NA A 502 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *38(H2 O) HELIX 1 AA1 ASP A 166 GLY A 180 1 15 HELIX 2 AA2 GLY A 183 ALA A 192 1 10 HELIX 3 AA3 GLY A 219 HIS A 235 1 17 HELIX 4 AA4 GLU A 260 ALA A 268 1 9 HELIX 5 AA5 MET A 283 ALA A 286 5 4 HELIX 6 AA6 ALA A 287 VAL A 301 1 15 HELIX 7 AA7 ALA A 302 TRP A 304 5 3 HELIX 8 AA8 LEU A 316 GLY A 324 1 9 HELIX 9 AA9 ASP A 325 VAL A 336 1 12 HELIX 10 AB1 VAL A 336 ASP A 342 1 7 HELIX 11 AB2 ALA A 343 CYS A 357 1 15 HELIX 12 AB3 ALA A 360 LEU A 368 1 9 HELIX 13 AB4 HIS A 371 GLY A 387 1 17 HELIX 14 AB5 GLN A 392 LEU A 408 1 17 SHEET 1 AA1 5 ALA A 239 HIS A 244 0 SHEET 2 AA1 5 TRP A 247 SER A 253 -1 O ILE A 251 N LEU A 240 SHEET 3 AA1 5 ALA A 201 PRO A 208 -1 N GLY A 206 O LEU A 248 SHEET 4 AA1 5 PHE A 270 ALA A 281 -1 O ALA A 281 N ALA A 201 SHEET 5 AA1 5 VAL A 311 LEU A 312 1 O VAL A 311 N ILE A 277 SSBOND 1 CYS A 357 CYS A 364 1555 1555 2.19 LINK OG1 THR A 202 NA NA A 502 1555 1555 2.56 LINK O VAL A 252 NA NA A 502 1555 1555 2.88 LINK O GLY A 254 NA NA A 502 1555 1555 2.56 CISPEP 1 ARG A 309 PRO A 310 0 2.45 CRYST1 63.040 75.280 139.520 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007167 0.00000 TER 1788 ASN A 409 HETATM 1789 C TRS A 501 41.287 -0.622 -35.929 1.00 74.29 C0 HETATM 1790 C1 TRS A 501 42.287 -1.649 -36.444 1.00 73.92 C0 HETATM 1791 C2 TRS A 501 41.164 -0.710 -34.404 1.00 81.03 C0 HETATM 1792 C3 TRS A 501 39.912 -0.851 -36.585 1.00 96.32 C0 HETATM 1793 N TRS A 501 41.871 0.738 -36.295 1.00 60.61 N0 HETATM 1794 O1 TRS A 501 42.416 -1.515 -37.846 1.00 46.03 O0 HETATM 1795 O2 TRS A 501 39.839 -0.510 -33.947 1.00 61.74 O0 HETATM 1796 O3 TRS A 501 39.530 -2.228 -36.723 1.00 91.17 O0 HETATM 1797 NA NA A 502 22.180 9.521 -6.212 1.00 62.93 NA0 HETATM 1798 O HOH A 601 28.769 -3.860 -22.878 1.00 61.50 O0 HETATM 1799 O HOH A 602 17.601 9.964 -28.563 1.00 51.47 O0 HETATM 1800 O HOH A 603 28.618 0.822 -23.792 1.00 38.41 O0 HETATM 1801 O HOH A 604 18.839 18.554 -28.820 1.00 56.70 O0 HETATM 1802 O HOH A 605 22.576 20.188 -18.083 1.00 52.70 O0 HETATM 1803 O HOH A 606 14.896 21.610 -15.651 1.00 43.24 O0 HETATM 1804 O HOH A 607 17.388 -0.349 -3.190 1.00 43.83 O0 HETATM 1805 O HOH A 608 12.202 7.720 -23.199 1.00 36.75 O0 HETATM 1806 O HOH A 609 34.302 1.860 -20.999 1.00 43.56 O0 HETATM 1807 O HOH A 610 51.259 -5.403 -25.197 1.00 53.16 O0 HETATM 1808 O HOH A 611 27.046 21.160 -10.488 1.00 44.04 O0 HETATM 1809 O HOH A 612 38.972 -13.534 -24.157 1.00 43.84 O0 HETATM 1810 O HOH A 613 26.813 4.513 -32.504 1.00 35.97 O0 HETATM 1811 O HOH A 614 25.691 5.775 -7.135 1.00 52.62 O0 HETATM 1812 O HOH A 615 19.280 9.125 -0.065 1.00 49.09 O0 HETATM 1813 O HOH A 616 26.700 23.731 -11.578 1.00 56.67 O0 HETATM 1814 O HOH A 617 5.156 2.487 -21.726 1.00 55.19 O0 HETATM 1815 O HOH A 618 38.250 1.583 -37.808 1.00 41.18 O0 HETATM 1816 O HOH A 619 27.610 15.487 -11.529 1.00 51.13 O0 HETATM 1817 O HOH A 620 13.696 -1.921 -17.962 1.00 47.70 O0 HETATM 1818 O HOH A 621 23.179 16.742 -1.816 1.00 49.40 O0 HETATM 1819 O HOH A 622 16.934 4.080 -28.374 1.00 47.38 O0 HETATM 1820 O HOH A 623 44.623 -4.830 -38.426 1.00 56.02 O0 HETATM 1821 O HOH A 624 15.309 0.000 0.000 0.50 50.13 O0 HETATM 1822 O HOH A 625 11.141 5.830 -20.626 1.00 40.42 O0 HETATM 1823 O HOH A 626 16.738 1.876 0.894 1.00 49.03 O0 HETATM 1824 O HOH A 627 28.681 19.485 -11.994 1.00 47.35 O0 HETATM 1825 O HOH A 628 17.407 2.138 -1.684 1.00 45.14 O0 HETATM 1826 O HOH A 629 29.706 19.481 -27.301 1.00 52.33 O0 HETATM 1827 O HOH A 630 17.181 2.890 -22.161 1.00 33.56 O0 HETATM 1828 O HOH A 631 25.203 6.546 -11.893 1.00 48.51 O0 HETATM 1829 O HOH A 632 9.913 -0.551 -15.610 1.00 43.61 O0 HETATM 1830 O HOH A 633 29.773 3.982 -24.312 1.00 45.65 O0 HETATM 1831 O HOH A 634 26.895 7.791 -16.824 1.00 37.83 O0 HETATM 1832 O HOH A 635 5.925 1.001 -16.728 1.00 55.52 O0 HETATM 1833 O HOH A 636 34.772 -3.928 -35.420 1.00 45.87 O0 HETATM 1834 O HOH A 637 13.416 0.711 -24.118 1.00 50.16 O0 HETATM 1835 O HOH A 638 28.042 6.536 -14.657 1.00 51.82 O0 CONECT 275 1797 CONECT 612 1797 CONECT 625 1797 CONECT 1378 1419 CONECT 1419 1378 CONECT 1789 1790 1791 1792 1793 CONECT 1790 1789 1794 CONECT 1791 1789 1795 CONECT 1792 1789 1796 CONECT 1793 1789 CONECT 1794 1790 CONECT 1795 1791 CONECT 1796 1792 CONECT 1797 275 612 625 MASTER 404 0 2 14 5 0 0 6 1834 1 14 22 END