HEADER PEPTIDE BINDING PROTEIN 07-MAY-24 9F8W TITLE CRYSTAL STRUCTURE OF THE APO PEX5 PEROXISOMAL CARGO RECEPTOR FROM TITLE 2 TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME TARGETING SIGNAL 1 RECEPTOR PEX5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS TRYPANOSOMA, PEROXIN, PEROXIN TARGETING SIGNAL, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.K.BANASIK,G.DUBIN REVDAT 3 20-AUG-25 9F8W 1 REMARK REVDAT 2 16-OCT-24 9F8W 1 JRNL REVDAT 1 02-OCT-24 9F8W 0 JRNL AUTH M.BANASIK,V.NAPOLITANO,A.BLAT,K.ABDULKARIM,J.PLEWKA, JRNL AUTH 2 C.CZAPLEWSKI,A.GIELDON,M.KOZAK,B.WLADYKA,G.POPOWICZ,G.DUBIN JRNL TITL STRUCTURAL DYNAMICS OF THE TPR DOMAIN OF THE PEROXISOMAL JRNL TITL 2 CARGO RECEPTOR PEX5 IN TRYPANOSOMA. JRNL REF INT.J.BIOL.MACROMOL. V. 280 35510 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 39304044 JRNL DOI 10.1016/J.IJBIOMAC.2024.135510 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.285 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4962 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4550 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6753 ; 1.552 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10401 ; 1.349 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ; 5.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;38.309 ;23.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;19.299 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.494 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5865 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1179 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2530 ; 4.672 ; 5.726 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2529 ; 4.671 ; 5.724 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3157 ; 6.655 ; 8.571 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3158 ; 6.654 ; 8.574 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2432 ; 4.993 ; 6.040 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2433 ; 4.992 ; 6.042 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3593 ; 7.384 ; 8.915 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5549 ; 9.208 ;66.740 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5539 ; 9.215 ;66.743 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9F8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292131494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M SODIUM-POTASSIUM TARTRATE REMARK 280 TETRAHYDRATE, 20% W/V GLYCEROL, 0.05 M HEPES PH 7.4 AFTER 8 DAYS REMARK 280 AT 293 K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 103.27250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.62441 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.62233 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 103.27250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 59.62441 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.62233 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 103.27250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 59.62441 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.62233 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 119.24881 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.24467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 119.24881 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.24467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 119.24881 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.24467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 315 REMARK 465 ALA A 316 REMARK 465 SER A 317 REMARK 465 MET A 318 REMARK 465 THR A 319 REMARK 465 GLY A 320 REMARK 465 GLY A 321 REMARK 465 GLN A 322 REMARK 465 GLN A 323 REMARK 465 MET A 324 REMARK 465 GLY A 325 REMARK 465 ARG A 326 REMARK 465 GLY A 327 REMARK 465 SER A 328 REMARK 465 GLU A 329 REMARK 465 PHE A 330 REMARK 465 MET A 331 REMARK 465 LEU A 332 REMARK 465 ASP A 461 REMARK 465 VAL A 462 REMARK 465 ASP A 463 REMARK 465 ILE A 464 REMARK 465 ASP A 465 REMARK 465 ASP A 466 REMARK 465 LEU A 467 REMARK 465 ASN A 468 REMARK 465 VAL A 469 REMARK 465 GLN A 470 REMARK 465 SER A 471 REMARK 465 GLU A 472 REMARK 465 ASP A 473 REMARK 465 PHE A 474 REMARK 465 PHE A 660 REMARK 465 GLN A 661 REMARK 465 MET B 315 REMARK 465 ASN B 457 REMARK 465 LEU B 458 REMARK 465 GLN B 459 REMARK 465 ALA B 460 REMARK 465 ASP B 461 REMARK 465 VAL B 462 REMARK 465 ASP B 463 REMARK 465 ILE B 464 REMARK 465 ASP B 465 REMARK 465 ASP B 466 REMARK 465 LEU B 467 REMARK 465 ASN B 468 REMARK 465 VAL B 469 REMARK 465 GLN B 470 REMARK 465 SER B 471 REMARK 465 GLU B 472 REMARK 465 ASP B 473 REMARK 465 PHE B 474 REMARK 465 PHE B 475 REMARK 465 PHE B 476 REMARK 465 LEU B 655 REMARK 465 GLU B 656 REMARK 465 ASN B 657 REMARK 465 LEU B 658 REMARK 465 TYR B 659 REMARK 465 PHE B 660 REMARK 465 GLN B 661 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 GLU A 354 CD OE1 OE2 REMARK 470 LYS A 361 CD CE NZ REMARK 470 LYS A 378 NZ REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 ARG A 441 CZ NH1 NH2 REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 GLN A 452 CG CD OE1 NE2 REMARK 470 VAL A 456 CG1 CG2 REMARK 470 LEU A 458 CG CD1 CD2 REMARK 470 GLN A 459 CG CD OE1 NE2 REMARK 470 PHE A 475 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 483 CZ NH1 NH2 REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 593 CZ NH1 NH2 REMARK 470 THR A 605 OG1 CG2 REMARK 470 GLU A 607 CG CD OE1 OE2 REMARK 470 ARG A 610 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 611 CG CD OE1 OE2 REMARK 470 ARG A 614 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 LYS A 646 CG CD CE NZ REMARK 470 GLN A 651 CG CD OE1 NE2 REMARK 470 TYR A 659 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 361 CE NZ REMARK 470 ARG B 441 NE CZ NH1 NH2 REMARK 470 ALA B 477 CB REMARK 470 GLU B 481 CD OE1 OE2 REMARK 470 GLU B 494 OE1 OE2 REMARK 470 ARG B 525 CD NE CZ NH1 NH2 REMARK 470 GLU B 607 CD OE1 OE2 REMARK 470 ARG B 610 NH1 NH2 REMARK 470 ARG B 614 CD NE CZ NH1 NH2 REMARK 470 GLU B 634 CD OE1 OE2 REMARK 470 LYS B 646 CD CE NZ REMARK 470 LEU B 654 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 380 0.52 -68.20 REMARK 500 ASP A 413 89.85 -155.07 REMARK 500 PHE A 476 177.31 169.68 REMARK 500 ALA A 478 55.56 -163.43 REMARK 500 ARG A 530 55.03 30.79 REMARK 500 ARG A 549 68.39 -117.16 REMARK 500 GLN A 583 73.79 -103.55 REMARK 500 THR A 605 44.10 -81.80 REMARK 500 SER A 652 78.80 -105.45 REMARK 500 ASN A 657 26.14 -57.88 REMARK 500 ASN B 351 66.07 -161.60 REMARK 500 PRO B 414 -7.34 -59.55 REMARK 500 TYR B 450 -13.67 -141.56 REMARK 500 ASN B 496 76.84 -170.83 REMARK 500 ASN B 564 88.35 -151.15 REMARK 500 GLU B 607 -62.28 60.52 REMARK 500 ARG B 629 68.71 -109.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 9F8W A 332 655 UNP Q9U7C3 Q9U7C3_9TRYP 332 655 DBREF 9F8W B 332 655 UNP Q9U7C3 Q9U7C3_9TRYP 332 655 SEQADV 9F8W MET A 315 UNP Q9U7C3 INITIATING METHIONINE SEQADV 9F8W ALA A 316 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W SER A 317 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET A 318 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W THR A 319 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY A 320 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY A 321 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLN A 322 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLN A 323 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET A 324 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY A 325 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W ARG A 326 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY A 327 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W SER A 328 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLU A 329 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W PHE A 330 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET A 331 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLU A 656 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W ASN A 657 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W LEU A 658 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W TYR A 659 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W PHE A 660 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLN A 661 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET B 315 UNP Q9U7C3 INITIATING METHIONINE SEQADV 9F8W ALA B 316 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W SER B 317 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET B 318 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W THR B 319 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY B 320 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY B 321 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLN B 322 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLN B 323 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET B 324 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY B 325 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W ARG B 326 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLY B 327 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W SER B 328 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLU B 329 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W PHE B 330 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W MET B 331 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLU B 656 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W ASN B 657 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W LEU B 658 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W TYR B 659 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W PHE B 660 UNP Q9U7C3 EXPRESSION TAG SEQADV 9F8W GLN B 661 UNP Q9U7C3 EXPRESSION TAG SEQRES 1 A 347 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 347 SER GLU PHE MET LEU GLN ASN ASN THR ASP TYR PRO PHE SEQRES 3 A 347 GLU ALA ASN ASN PRO TYR MET TYR HIS GLU ASN PRO MET SEQRES 4 A 347 GLU GLU GLY LEU SER MET LEU LYS LEU ALA ASN LEU ALA SEQRES 5 A 347 GLU ALA ALA LEU ALA PHE GLU ALA VAL CYS GLN LYS GLU SEQRES 6 A 347 PRO GLU ARG GLU GLU ALA TRP ARG SER LEU GLY LEU THR SEQRES 7 A 347 GLN ALA GLU ASN GLU LYS ASP GLY LEU ALA ILE ILE ALA SEQRES 8 A 347 LEU ASN HIS ALA ARG MET LEU ASP PRO LYS ASP ILE ALA SEQRES 9 A 347 VAL HIS ALA ALA LEU ALA VAL SER HIS THR ASN GLU HIS SEQRES 10 A 347 ASN ALA ASN ALA ALA LEU ALA SER LEU ARG ALA TRP LEU SEQRES 11 A 347 LEU SER GLN PRO GLN TYR GLU GLN LEU GLY SER VAL ASN SEQRES 12 A 347 LEU GLN ALA ASP VAL ASP ILE ASP ASP LEU ASN VAL GLN SEQRES 13 A 347 SER GLU ASP PHE PHE PHE ALA ALA PRO ASN GLU TYR ARG SEQRES 14 A 347 GLU CYS ARG THR LEU LEU HIS ALA ALA LEU GLU MET ASN SEQRES 15 A 347 PRO ASN ASP ALA GLN LEU HIS ALA SER LEU GLY VAL LEU SEQRES 16 A 347 TYR ASN LEU SER ASN ASN TYR ASP SER ALA ALA ALA ASN SEQRES 17 A 347 LEU ARG ARG ALA VAL GLU LEU ARG PRO ASP ASP ALA GLN SEQRES 18 A 347 LEU TRP ASN LYS LEU GLY ALA THR LEU ALA ASN GLY ASN SEQRES 19 A 347 ARG PRO GLN GLU ALA LEU ASP ALA TYR ASN ARG ALA LEU SEQRES 20 A 347 ASP ILE ASN PRO GLY TYR VAL ARG VAL MET TYR ASN MET SEQRES 21 A 347 ALA VAL SER TYR SER ASN MET SER GLN TYR ASP LEU ALA SEQRES 22 A 347 ALA LYS GLN LEU VAL ARG ALA ILE TYR MET GLN VAL GLY SEQRES 23 A 347 GLY THR THR PRO THR GLY GLU ALA SER ARG GLU ALA THR SEQRES 24 A 347 ARG SER MET TRP ASP PHE PHE ARG MET LEU LEU ASN VAL SEQRES 25 A 347 MET ASN ARG PRO ASP LEU VAL GLU LEU THR TYR ALA GLN SEQRES 26 A 347 ASN VAL GLU PRO PHE ALA LYS GLU PHE GLY LEU GLN SER SEQRES 27 A 347 MET LEU LEU GLU ASN LEU TYR PHE GLN SEQRES 1 B 347 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 B 347 SER GLU PHE MET LEU GLN ASN ASN THR ASP TYR PRO PHE SEQRES 3 B 347 GLU ALA ASN ASN PRO TYR MET TYR HIS GLU ASN PRO MET SEQRES 4 B 347 GLU GLU GLY LEU SER MET LEU LYS LEU ALA ASN LEU ALA SEQRES 5 B 347 GLU ALA ALA LEU ALA PHE GLU ALA VAL CYS GLN LYS GLU SEQRES 6 B 347 PRO GLU ARG GLU GLU ALA TRP ARG SER LEU GLY LEU THR SEQRES 7 B 347 GLN ALA GLU ASN GLU LYS ASP GLY LEU ALA ILE ILE ALA SEQRES 8 B 347 LEU ASN HIS ALA ARG MET LEU ASP PRO LYS ASP ILE ALA SEQRES 9 B 347 VAL HIS ALA ALA LEU ALA VAL SER HIS THR ASN GLU HIS SEQRES 10 B 347 ASN ALA ASN ALA ALA LEU ALA SER LEU ARG ALA TRP LEU SEQRES 11 B 347 LEU SER GLN PRO GLN TYR GLU GLN LEU GLY SER VAL ASN SEQRES 12 B 347 LEU GLN ALA ASP VAL ASP ILE ASP ASP LEU ASN VAL GLN SEQRES 13 B 347 SER GLU ASP PHE PHE PHE ALA ALA PRO ASN GLU TYR ARG SEQRES 14 B 347 GLU CYS ARG THR LEU LEU HIS ALA ALA LEU GLU MET ASN SEQRES 15 B 347 PRO ASN ASP ALA GLN LEU HIS ALA SER LEU GLY VAL LEU SEQRES 16 B 347 TYR ASN LEU SER ASN ASN TYR ASP SER ALA ALA ALA ASN SEQRES 17 B 347 LEU ARG ARG ALA VAL GLU LEU ARG PRO ASP ASP ALA GLN SEQRES 18 B 347 LEU TRP ASN LYS LEU GLY ALA THR LEU ALA ASN GLY ASN SEQRES 19 B 347 ARG PRO GLN GLU ALA LEU ASP ALA TYR ASN ARG ALA LEU SEQRES 20 B 347 ASP ILE ASN PRO GLY TYR VAL ARG VAL MET TYR ASN MET SEQRES 21 B 347 ALA VAL SER TYR SER ASN MET SER GLN TYR ASP LEU ALA SEQRES 22 B 347 ALA LYS GLN LEU VAL ARG ALA ILE TYR MET GLN VAL GLY SEQRES 23 B 347 GLY THR THR PRO THR GLY GLU ALA SER ARG GLU ALA THR SEQRES 24 B 347 ARG SER MET TRP ASP PHE PHE ARG MET LEU LEU ASN VAL SEQRES 25 B 347 MET ASN ARG PRO ASP LEU VAL GLU LEU THR TYR ALA GLN SEQRES 26 B 347 ASN VAL GLU PRO PHE ALA LYS GLU PHE GLY LEU GLN SER SEQRES 27 B 347 MET LEU LEU GLU ASN LEU TYR PHE GLN FORMUL 3 HOH *112(H2 O) HELIX 1 AA1 ASN A 344 HIS A 349 5 6 HELIX 2 AA2 ASN A 351 LEU A 362 1 12 HELIX 3 AA3 ASN A 364 GLU A 379 1 16 HELIX 4 AA4 ARG A 382 ASN A 396 1 15 HELIX 5 AA5 LYS A 398 ASP A 413 1 16 HELIX 6 AA6 ASP A 416 GLU A 430 1 15 HELIX 7 AA7 ASN A 432 SER A 446 1 15 HELIX 8 AA8 GLN A 447 GLU A 451 5 5 HELIX 9 AA9 ALA A 478 ASN A 496 1 19 HELIX 10 AB1 ASP A 499 SER A 513 1 15 HELIX 11 AB2 ASN A 515 LEU A 529 1 15 HELIX 12 AB3 ASP A 533 GLY A 547 1 15 HELIX 13 AB4 ARG A 549 ASN A 564 1 16 HELIX 14 AB5 TYR A 567 MET A 581 1 15 HELIX 15 AB6 GLN A 583 GLY A 600 1 18 HELIX 16 AB7 GLU A 607 THR A 613 1 7 HELIX 17 AB8 THR A 613 MET A 627 1 15 HELIX 18 AB9 ARG A 629 LEU A 635 1 7 HELIX 19 AC1 THR A 636 GLN A 639 5 4 HELIX 20 AC2 VAL A 641 GLY A 649 1 9 HELIX 21 AC3 GLY B 321 GLY B 327 1 7 HELIX 22 AC4 SER B 328 ASN B 335 1 8 HELIX 23 AC5 ASN B 344 HIS B 349 5 6 HELIX 24 AC6 ASN B 351 LEU B 362 1 12 HELIX 25 AC7 ASN B 364 GLU B 379 1 16 HELIX 26 AC8 ARG B 382 ASN B 396 1 15 HELIX 27 AC9 LYS B 398 ASP B 413 1 16 HELIX 28 AD1 ASP B 416 GLU B 430 1 15 HELIX 29 AD2 ASN B 432 SER B 446 1 15 HELIX 30 AD3 TYR B 450 SER B 455 5 6 HELIX 31 AD4 ALA B 478 ASN B 496 1 19 HELIX 32 AD5 ASP B 499 SER B 513 1 15 HELIX 33 AD6 ASN B 515 ARG B 530 1 16 HELIX 34 AD7 ASP B 533 GLY B 547 1 15 HELIX 35 AD8 ARG B 549 ASN B 564 1 16 HELIX 36 AD9 TYR B 567 MET B 581 1 15 HELIX 37 AE1 GLN B 583 GLY B 600 1 18 HELIX 38 AE2 THR B 613 ASN B 628 1 16 HELIX 39 AE3 ARG B 629 THR B 636 1 8 HELIX 40 AE4 TYR B 637 GLN B 639 5 3 HELIX 41 AE5 VAL B 641 PHE B 648 1 8 CRYST1 206.545 206.545 67.867 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004842 0.002795 0.000000 0.00000 SCALE2 0.000000 0.005591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014735 0.00000 MASTER 408 0 0 41 0 0 0 6 4935 2 0 54 END