HEADER PROTON TRANSPORT 07-MAY-24 9F9D TITLE LASER EXCITATION EFFECTS ON BR: DARK DATASET RECORDED AT SWISSFEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BR,BACTERIOOPSIN,BO; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; SOURCE 3 ORGANISM_TAXID: 2242; SOURCE 4 ATCC: 700922; SOURCE 5 GENE: BOP, VNG_1467G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIORHODOSPIN, PROTON TRANSPORT, MEMBRANE, RETINAL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, SERIAL CRYSTALLOGRAPHY, LASER EXCITATION EXPDTA X-RAY DIFFRACTION AUTHOR Q.BERTRAND,T.WEINERT,J.STANDFUSS REVDAT 1 22-JAN-25 9F9D 0 JRNL AUTH Q.BERTRAND,P.NOGLY,E.NANGO,D.KEKILLI,G.KHUSAINOV,A.FURRER, JRNL AUTH 2 D.JAMES,F.DWORKOWSKI,P.SKOPINTSEV,S.MOUS,I.MARTIEL, JRNL AUTH 3 P.BORJESSON,G.ORTOLANI,C.Y.HUANG,M.KEPA,D.OZEROV,S.BRUNLE, JRNL AUTH 4 V.PANNEELS,T.TANAKA,R.TANAKA,K.TONO,S.OWADA,P.J.M.JOHNSON, JRNL AUTH 5 K.NASS,G.KNOPP,C.CIRELLI,C.MILNE,G.SCHERTLER,S.IWATA, JRNL AUTH 6 R.NEUTZE,T.WEINERT,J.STANDFUSS JRNL TITL STRUCTURAL EFFECTS OF HIGH LASER POWER DENSITIES ON AN EARLY JRNL TITL 2 BACTERIORHODOPSIN PHOTOCYCLE INTERMEDIATE. JRNL REF NAT COMMUN V. 15 10278 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39604356 JRNL DOI 10.1038/S41467-024-54422-8 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20_4459: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.290 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.0200 - 4.0800 1.00 1858 145 0.1470 0.1851 REMARK 3 2 4.0700 - 3.2500 1.00 1829 149 0.1327 0.1629 REMARK 3 3 3.2400 - 2.8400 1.00 1822 143 0.1430 0.1535 REMARK 3 4 2.8400 - 2.5800 1.00 1831 142 0.1268 0.1461 REMARK 3 5 2.5800 - 2.3900 1.00 1840 141 0.1210 0.1525 REMARK 3 6 2.3900 - 2.2500 1.00 1798 137 0.1080 0.1690 REMARK 3 7 2.2500 - 2.1400 1.00 1837 148 0.1159 0.1443 REMARK 3 8 2.1400 - 2.0500 1.00 1819 147 0.1084 0.1516 REMARK 3 9 2.0500 - 1.9700 1.00 1796 142 0.1310 0.1768 REMARK 3 10 1.9700 - 1.9000 1.00 1827 143 0.1384 0.1839 REMARK 3 11 1.9000 - 1.8400 1.00 1801 142 0.1855 0.2239 REMARK 3 12 1.8400 - 1.7900 1.00 1816 144 0.1910 0.2661 REMARK 3 13 1.7900 - 1.7400 1.00 1838 140 0.2106 0.2803 REMARK 3 14 1.7400 - 1.7000 1.00 1781 141 0.2483 0.2606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2158 REMARK 3 ANGLE : 1.524 2872 REMARK 3 CHIRALITY : 0.114 314 REMARK 3 PLANARITY : 0.016 340 REMARK 3 DIHEDRAL : 15.374 456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7508 27.2941 30.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.2204 REMARK 3 T33: 0.3038 T12: 0.0253 REMARK 3 T13: -0.0054 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.9055 L22: 4.7688 REMARK 3 L33: 9.0261 L12: 0.3585 REMARK 3 L13: -1.5285 L23: -3.1408 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: 0.1360 S13: -0.1733 REMARK 3 S21: -0.2297 S22: -0.0649 S23: -0.3981 REMARK 3 S31: 0.3928 S32: 0.4691 S33: 0.1979 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2865 28.0681 41.0101 REMARK 3 T TENSOR REMARK 3 T11: 0.2668 T22: 0.2261 REMARK 3 T33: 0.2696 T12: 0.0062 REMARK 3 T13: -0.0287 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.7502 L22: 2.1642 REMARK 3 L33: 4.3828 L12: -0.2387 REMARK 3 L13: -0.4343 L23: 1.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: -0.2726 S13: -0.1006 REMARK 3 S21: 0.3748 S22: 0.0535 S23: -0.0475 REMARK 3 S31: 0.5250 S32: -0.1241 S33: -0.0074 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0940 40.0019 14.8358 REMARK 3 T TENSOR REMARK 3 T11: 0.5221 T22: 0.4563 REMARK 3 T33: 0.2857 T12: 0.0314 REMARK 3 T13: 0.0077 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 4.9739 L22: 2.1410 REMARK 3 L33: 4.0674 L12: -0.9752 REMARK 3 L13: 0.4309 L23: -1.4255 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: 0.5483 S13: 0.1997 REMARK 3 S21: -0.8759 S22: -0.0953 S23: 0.1143 REMARK 3 S31: -0.3896 S32: -0.4822 S33: 0.0276 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0654 39.2968 40.6839 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.2088 REMARK 3 T33: 0.2196 T12: 0.0229 REMARK 3 T13: -0.0292 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.2587 L22: 2.2271 REMARK 3 L33: 5.3068 L12: -0.0419 REMARK 3 L13: 0.1470 L23: 1.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: -0.1836 S13: -0.0398 REMARK 3 S21: 0.2122 S22: 0.0478 S23: 0.0309 REMARK 3 S31: 0.0324 S32: -0.1916 S33: -0.0272 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1752 46.6644 34.1745 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1639 REMARK 3 T33: 0.2259 T12: 0.0141 REMARK 3 T13: -0.0297 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.0479 L22: 2.1679 REMARK 3 L33: 2.2639 L12: 0.1975 REMARK 3 L13: -1.5322 L23: -0.3493 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: -0.0426 S13: 0.0780 REMARK 3 S21: -0.0433 S22: 0.1789 S23: 0.0235 REMARK 3 S31: 0.1652 S32: -0.0624 S33: -0.3309 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2064 53.6215 32.7616 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1881 REMARK 3 T33: 0.2687 T12: -0.0215 REMARK 3 T13: -0.0138 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.0918 L22: 2.8246 REMARK 3 L33: 7.4359 L12: -0.0286 REMARK 3 L13: 0.3209 L23: -1.5627 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: -0.0483 S13: 0.2309 REMARK 3 S21: 0.2524 S22: -0.0478 S23: -0.1702 REMARK 3 S31: -0.5832 S32: 0.2785 S33: 0.0141 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3783 45.7895 45.9182 REMARK 3 T TENSOR REMARK 3 T11: 0.3593 T22: 0.2933 REMARK 3 T33: 0.2385 T12: -0.0221 REMARK 3 T13: -0.0798 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.8138 L22: 1.4916 REMARK 3 L33: 5.1006 L12: -0.2461 REMARK 3 L13: 1.0056 L23: -1.2326 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.4910 S13: 0.0520 REMARK 3 S21: 0.5915 S22: 0.0270 S23: -0.2338 REMARK 3 S31: -0.6706 S32: 0.1265 S33: -0.0788 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5018 39.7920 29.7715 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.2344 REMARK 3 T33: 0.2889 T12: -0.0271 REMARK 3 T13: -0.0246 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.5373 L22: 1.1437 REMARK 3 L33: 3.7734 L12: -0.3250 REMARK 3 L13: 0.0877 L23: -0.4876 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0899 S13: 0.0979 REMARK 3 S21: 0.0006 S22: 0.0492 S23: -0.1984 REMARK 3 S31: -0.2569 S32: 0.1469 S33: -0.0263 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4914 31.9009 54.4407 REMARK 3 T TENSOR REMARK 3 T11: 0.5209 T22: 0.5571 REMARK 3 T33: 0.4288 T12: 0.0396 REMARK 3 T13: -0.1601 T23: 0.1163 REMARK 3 L TENSOR REMARK 3 L11: 5.4858 L22: 4.4805 REMARK 3 L33: 5.7488 L12: -2.0798 REMARK 3 L13: -5.3823 L23: 2.7188 REMARK 3 S TENSOR REMARK 3 S11: -0.4474 S12: -0.5747 S13: -0.2111 REMARK 3 S21: 1.0912 S22: 0.1153 S23: -0.9383 REMARK 3 S31: 0.6005 S32: 0.8855 S33: 0.4167 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2382 30.3321 64.8258 REMARK 3 T TENSOR REMARK 3 T11: 0.9920 T22: 0.5582 REMARK 3 T33: 0.3690 T12: -0.0831 REMARK 3 T13: -0.1201 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 4.0153 L22: 0.9648 REMARK 3 L33: 3.8409 L12: -1.9376 REMARK 3 L13: 3.5701 L23: -1.8643 REMARK 3 S TENSOR REMARK 3 S11: 0.9800 S12: -0.3561 S13: -0.5777 REMARK 3 S21: 1.1096 S22: -0.0832 S23: 0.0636 REMARK 3 S31: 0.8041 S32: 0.5807 S33: -0.9252 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9F9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292138399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : ESA REMARK 200 X-RAY GENERATOR MODEL : SWISSFEL ARAMIS BEAMLINE ESA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 16.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 186.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 123.0 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA/K PHOSPHATE BUFFER PH 5.6 30 REMARK 280 % PEG 2000, LIPIDIC CUBIC PHASE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.85000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.85000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 449 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 450 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 SER A 158 OG REMARK 470 LYS A 172 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 32 O HOH A 401 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 209 CG - SD - CE ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 7 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LI1 A 301 REMARK 610 LI1 A 302 REMARK 610 LI1 A 303 REMARK 610 LI1 A 304 REMARK 610 LI1 A 305 REMARK 610 LI1 A 306 REMARK 610 LI1 A 312 REMARK 610 LI1 A 313 REMARK 610 LI1 A 314 REMARK 610 LI1 A 315 REMARK 610 LI1 A 316 REMARK 610 LI1 A 317 DBREF 9F9D A 5 234 UNP P02945 BACR_HALSA 18 247 SEQADV 9F9D ALA A 4 UNP P02945 EXPRESSION TAG SEQRES 1 A 231 ALA THR GLY ARG PRO GLU TRP ILE TRP LEU ALA LEU GLY SEQRES 2 A 231 THR ALA LEU MET GLY LEU GLY THR LEU TYR PHE LEU VAL SEQRES 3 A 231 LYS GLY MET GLY VAL SER ASP PRO ASP ALA LYS LYS PHE SEQRES 4 A 231 TYR ALA ILE THR THR LEU VAL PRO ALA ILE ALA PHE THR SEQRES 5 A 231 MET TYR LEU SER MET LEU LEU GLY TYR GLY LEU THR MET SEQRES 6 A 231 VAL PRO PHE GLY GLY GLU GLN ASN PRO ILE TYR TRP ALA SEQRES 7 A 231 ARG TYR ALA ASP TRP LEU PHE THR THR PRO LEU LEU LEU SEQRES 8 A 231 LEU ASP LEU ALA LEU LEU VAL ASP ALA ASP GLN GLY THR SEQRES 9 A 231 ILE LEU ALA LEU VAL GLY ALA ASP GLY ILE MET ILE GLY SEQRES 10 A 231 THR GLY LEU VAL GLY ALA LEU THR LYS VAL TYR SER TYR SEQRES 11 A 231 ARG PHE VAL TRP TRP ALA ILE SER THR ALA ALA MET LEU SEQRES 12 A 231 TYR ILE LEU TYR VAL LEU PHE PHE GLY PHE THR SER LYS SEQRES 13 A 231 ALA GLU SER MET ARG PRO GLU VAL ALA SER THR PHE LYS SEQRES 14 A 231 VAL LEU ARG ASN VAL THR VAL VAL LEU TRP SER ALA TYR SEQRES 15 A 231 PRO VAL VAL TRP LEU ILE GLY SER GLU GLY ALA GLY ILE SEQRES 16 A 231 VAL PRO LEU ASN ILE GLU THR LEU LEU PHE MET VAL LEU SEQRES 17 A 231 ASP VAL SER ALA LYS VAL GLY PHE GLY LEU ILE LEU LEU SEQRES 18 A 231 ARG SER ARG ALA ILE PHE GLY GLU ALA GLU HET LI1 A 301 6 HET LI1 A 302 19 HET LI1 A 303 8 HET LI1 A 304 16 HET LI1 A 305 19 HET LI1 A 306 17 HET OLC A 307 65 HET OLC A 308 65 HET OLC A 309 65 HET OLC A 310 65 HET OLC A 311 65 HET LI1 A 312 16 HET LI1 A 313 19 HET LI1 A 314 8 HET LI1 A 315 13 HET LI1 A 316 19 HET LI1 A 317 6 HET RET A 318 48 HETNAM LI1 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14- HETNAM 2 LI1 TRIMETHYLHEXADECAN-16-YL]GLYCEROL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM RET RETINAL HETSYN LI1 LIPID FRAGMENT HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 LI1 12(C42 H86 O3) FORMUL 8 OLC 5(C21 H40 O4) FORMUL 19 RET C20 H28 O FORMUL 20 HOH *51(H2 O) HELIX 1 AA1 GLU A 9 GLY A 31 1 23 HELIX 2 AA2 ASP A 36 LEU A 62 1 27 HELIX 3 AA3 TRP A 80 VAL A 101 1 22 HELIX 4 AA4 ASP A 104 THR A 128 1 25 HELIX 5 AA5 VAL A 130 GLY A 155 1 26 HELIX 6 AA6 GLY A 155 GLU A 161 1 7 HELIX 7 AA7 ARG A 164 GLY A 192 1 29 HELIX 8 AA8 PRO A 200 SER A 226 1 27 HELIX 9 AA9 ARG A 227 PHE A 230 5 4 SHEET 1 AA1 2 THR A 67 PHE A 71 0 SHEET 2 AA1 2 GLU A 74 ILE A 78 -1 O ILE A 78 N THR A 67 LINK NZ LYS A 216 C15 RET A 318 1555 1555 1.35 CRYST1 62.950 62.950 111.700 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015886 0.009172 0.000000 0.00000 SCALE2 0.000000 0.018343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008953 0.00000