HEADER STRUCTURAL PROTEIN 22-MAY-24 9FF9 TITLE CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED TROPOMYOSIN CDC8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TROPOMYOSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ACETYLATED N-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: CDC8, SPAC27F1.02C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TROPOMYOSIN, CDC8, YEAST, OVERLAP COMPLEX, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,R.S.HEIRINGHOFF,R.FEDOROV,D.J.MANSTEIN REVDAT 3 02-APR-25 9FF9 1 REMARK REVDAT 2 12-FEB-25 9FF9 1 JRNL REMARK DBREF SEQADV REVDAT 2 2 1 SEQRES HELIX LINK ATOM REVDAT 1 06-NOV-24 9FF9 0 JRNL AUTH P.Y.A.REINKE,R.S.HEIRINGHOFF,T.REINDL,K.BAKER,M.H.TAFT, JRNL AUTH 2 A.MEENTS,D.P.MULVIHILL,O.R.DAVIES,R.FEDOROV,M.ZAHN, JRNL AUTH 3 D.J.MANSTEIN JRNL TITL CRYSTAL STRUCTURES OF CABLES FORMED BY THE ACETYLATED AND JRNL TITL 2 UNACETYLATED FORMS OF THE SCHIZOSACCHAROMYCES POMBE JRNL TITL 3 TROPOMYOSIN ORTHOLOG TPM CDC8 . JRNL REF J.BIOL.CHEM. V. 300 07925 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39461476 JRNL DOI 10.1016/J.JBC.2024.107925 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487: REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 36.5 REMARK 3 NUMBER OF REFLECTIONS : 6580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 25.9419 -28.4822 43.2985 REMARK 3 T TENSOR REMARK 3 T11: 0.3754 T22: 0.2678 REMARK 3 T33: 0.6905 T12: 0.0489 REMARK 3 T13: -0.1983 T23: 0.2096 REMARK 3 L TENSOR REMARK 3 L11: 0.3766 L22: 0.7616 REMARK 3 L33: -0.5408 L12: -0.6784 REMARK 3 L13: 0.9376 L23: -1.0937 REMARK 3 S TENSOR REMARK 3 S11: -0.1539 S12: 0.1868 S13: 0.3135 REMARK 3 S21: 0.1868 S22: -0.0858 S23: 0.0501 REMARK 3 S31: 0.3135 S32: 0.0501 S33: -0.4382 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292138783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.195 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0 43% MPD 350 MM REMARK 280 AMMONIUM ACETAT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 124.15211 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -165.17879 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 96.05091 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PV0 RELATED DB: PDB REMARK 900 RELATED ID: 8PUZ RELATED DB: PDB DBREF 9FF9 A 2 162 UNP Q02088 TPM_SCHPO 1 161 DBREF 9FF9 B 2 162 UNP Q02088 TPM_SCHPO 1 161 SEQADV 9FF9 ACE A 1 UNP Q02088 ACETYLATION SEQADV 9FF9 ACE B 1 UNP Q02088 ACETYLATION SEQRES 1 A 162 ACE MET ASP LYS LEU ARG GLU LYS ILE ASN ALA ALA ARG SEQRES 2 A 162 ALA GLU THR ASP GLU ALA VAL ALA ARG ALA GLU ALA ALA SEQRES 3 A 162 GLU ALA LYS LEU LYS GLU VAL GLU LEU GLN LEU SER LEU SEQRES 4 A 162 LYS GLU GLN GLU TYR GLU SER LEU SER ARG LYS SER GLU SEQRES 5 A 162 ALA ALA GLU SER GLN LEU GLU GLU LEU GLU GLU GLU THR SEQRES 6 A 162 LYS GLN LEU ARG LEU LYS ALA ASP ASN GLU ASP ILE GLN SEQRES 7 A 162 LYS THR GLU ALA GLU GLN LEU SER ARG LYS VAL GLU LEU SEQRES 8 A 162 LEU GLU GLU GLU LEU GLU THR ASN ASP LYS LEU LEU ARG SEQRES 9 A 162 GLU THR THR GLU LYS MET ARG GLN THR ASP VAL LYS ALA SEQRES 10 A 162 GLU HIS PHE GLU ARG ARG VAL GLN SER LEU GLU ARG GLU SEQRES 11 A 162 ARG ASP ASP MET GLU GLN LYS LEU GLU GLU MET THR ASP SEQRES 12 A 162 LYS TYR THR LYS VAL LYS ALA GLU LEU ASP GLU VAL HIS SEQRES 13 A 162 GLN ALA LEU GLU ASP LEU SEQRES 1 B 162 ACE MET ASP LYS LEU ARG GLU LYS ILE ASN ALA ALA ARG SEQRES 2 B 162 ALA GLU THR ASP GLU ALA VAL ALA ARG ALA GLU ALA ALA SEQRES 3 B 162 GLU ALA LYS LEU LYS GLU VAL GLU LEU GLN LEU SER LEU SEQRES 4 B 162 LYS GLU GLN GLU TYR GLU SER LEU SER ARG LYS SER GLU SEQRES 5 B 162 ALA ALA GLU SER GLN LEU GLU GLU LEU GLU GLU GLU THR SEQRES 6 B 162 LYS GLN LEU ARG LEU LYS ALA ASP ASN GLU ASP ILE GLN SEQRES 7 B 162 LYS THR GLU ALA GLU GLN LEU SER ARG LYS VAL GLU LEU SEQRES 8 B 162 LEU GLU GLU GLU LEU GLU THR ASN ASP LYS LEU LEU ARG SEQRES 9 B 162 GLU THR THR GLU LYS MET ARG GLN THR ASP VAL LYS ALA SEQRES 10 B 162 GLU HIS PHE GLU ARG ARG VAL GLN SER LEU GLU ARG GLU SEQRES 11 B 162 ARG ASP ASP MET GLU GLN LYS LEU GLU GLU MET THR ASP SEQRES 12 B 162 LYS TYR THR LYS VAL LYS ALA GLU LEU ASP GLU VAL HIS SEQRES 13 B 162 GLN ALA LEU GLU ASP LEU HET ACE A 1 3 HET ACE B 1 3 HETNAM ACE ACETYL GROUP FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 HOH *19(H2 O) HELIX 1 AA1 MET A 2 ASP A 161 1 160 HELIX 2 AA2 MET B 2 ASP B 161 1 160 LINK C ACE A 1 N MET A 2 1555 1555 1.45 LINK C ACE B 1 N MET B 2 1555 1555 1.45 CRYST1 25.401 38.318 97.542 97.71 94.71 101.50 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039369 0.008010 0.004532 0.00000 SCALE2 0.000000 0.026632 0.004155 0.00000 SCALE3 0.000000 0.000000 0.010411 0.00000 CONECT 1 2 3 4 CONECT 2 1 CONECT 3 1 CONECT 4 1 CONECT 1331 1332 1333 1334 CONECT 1332 1331 CONECT 1333 1331 CONECT 1334 1331 MASTER 197 0 2 2 0 0 0 6 2677 2 8 26 END