HEADER HYDROLASE 05-JUN-24 9FMA TITLE STRUCTURE OF PORPHYROMONAS GINGIVALIS ENDOPEPTIDASE (PGPEPO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPEPTIDASE PEPO; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 GENE: PEPO, PG_0159; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, PORPHYROMONAS GINGIVALIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.ZAK,P.GRUDNIK,I.WALIGORSKA,M.KSIAZEK REVDAT 1 17-DEC-25 9FMA 0 JRNL AUTH K.ZAK,I.WALIGORSKA,M.KSIAZEK JRNL TITL STRUCTURE OF TANNERELLA FORSYTHIA ENDOPEPTIDASE O (TFPEPO) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 80690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6100 - 4.3300 1.00 5616 151 0.1723 0.1726 REMARK 3 2 4.3300 - 3.4400 1.00 5379 143 0.1549 0.1712 REMARK 3 3 3.4400 - 3.0000 1.00 5274 141 0.1852 0.2312 REMARK 3 4 3.0000 - 2.7300 1.00 5283 141 0.1937 0.2226 REMARK 3 5 2.7300 - 2.5300 1.00 5232 140 0.1880 0.2250 REMARK 3 6 2.5300 - 2.3800 1.00 5245 140 0.1797 0.2518 REMARK 3 7 2.3800 - 2.2700 1.00 5206 139 0.1768 0.2132 REMARK 3 8 2.2600 - 2.1700 1.00 5182 139 0.1825 0.2113 REMARK 3 9 2.1700 - 2.0800 1.00 5210 139 0.2022 0.2276 REMARK 3 10 2.0800 - 2.0100 1.00 5194 139 0.2099 0.2432 REMARK 3 11 2.0100 - 1.9500 1.00 5153 138 0.2313 0.2696 REMARK 3 12 1.9500 - 1.8900 1.00 5177 138 0.2479 0.2884 REMARK 3 13 1.8900 - 1.8400 1.00 5182 138 0.2751 0.3374 REMARK 3 14 1.8400 - 1.8000 1.00 5134 137 0.2954 0.3297 REMARK 3 15 1.8000 - 1.7600 0.99 5123 137 0.3349 0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.218 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.971 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5413 REMARK 3 ANGLE : 0.658 7313 REMARK 3 CHIRALITY : 0.044 758 REMARK 3 PLANARITY : 0.006 962 REMARK 3 DIHEDRAL : 16.351 2010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7148 16.7519 101.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.2319 REMARK 3 T33: 0.3635 T12: -0.0039 REMARK 3 T13: 0.0404 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.3228 L22: 0.1589 REMARK 3 L33: 1.5575 L12: -0.2379 REMARK 3 L13: -0.5722 L23: 0.3778 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.2094 S13: -0.1882 REMARK 3 S21: 0.0564 S22: 0.0469 S23: 0.1133 REMARK 3 S31: -0.0765 S32: -0.1888 S33: -0.0249 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9992 33.2751 78.9479 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.2513 REMARK 3 T33: 0.3491 T12: -0.0162 REMARK 3 T13: 0.0081 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.6559 L22: 0.4251 REMARK 3 L33: 0.3787 L12: -0.1359 REMARK 3 L13: -0.3840 L23: 0.1630 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.0601 S13: 0.0245 REMARK 3 S21: 0.0014 S22: -0.0067 S23: -0.0501 REMARK 3 S31: -0.0329 S32: 0.0102 S33: -0.0146 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4058 20.6197 70.9559 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.2655 REMARK 3 T33: 0.3623 T12: -0.0304 REMARK 3 T13: 0.0481 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 1.2821 L22: 1.4278 REMARK 3 L33: 1.2803 L12: -0.6727 REMARK 3 L13: 0.1903 L23: -0.6634 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.0583 S13: -0.0762 REMARK 3 S21: -0.0413 S22: -0.0279 S23: -0.1785 REMARK 3 S31: 0.0533 S32: 0.1157 S33: 0.0018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2059 33.7957 76.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.2584 REMARK 3 T33: 0.3282 T12: 0.0132 REMARK 3 T13: -0.0073 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4100 L22: 0.9250 REMARK 3 L33: 0.9991 L12: 0.3957 REMARK 3 L13: -0.0838 L23: 0.3953 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.1059 S13: 0.0574 REMARK 3 S21: -0.0218 S22: -0.0403 S23: 0.0757 REMARK 3 S31: -0.1253 S32: -0.1425 S33: -0.0126 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.3252 25.1389 109.7335 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.2954 REMARK 3 T33: 0.3001 T12: -0.0297 REMARK 3 T13: -0.0454 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.6328 L22: 7.4867 REMARK 3 L33: 2.9118 L12: -1.8865 REMARK 3 L13: 0.3173 L23: -2.3732 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: -0.3334 S13: -0.0772 REMARK 3 S21: 0.7656 S22: 0.0464 S23: -0.1116 REMARK 3 S31: -0.2939 S32: 0.0642 S33: 0.0322 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.0516 23.5959 100.6334 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.3377 REMARK 3 T33: 0.3804 T12: -0.0030 REMARK 3 T13: -0.0088 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.0844 L22: 2.0524 REMARK 3 L33: 1.7756 L12: -0.5113 REMARK 3 L13: 0.1493 L23: -0.4783 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0906 S13: -0.0234 REMARK 3 S21: 0.3623 S22: -0.1546 S23: -0.3528 REMARK 3 S31: -0.0002 S32: 0.3131 S33: 0.2203 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 525 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4586 23.6608 97.7675 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.2522 REMARK 3 T33: 0.3645 T12: 0.0076 REMARK 3 T13: -0.0019 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.2792 L22: 0.5906 REMARK 3 L33: 0.6047 L12: 0.4502 REMARK 3 L13: -0.3061 L23: -0.5518 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: -0.0548 S13: -0.0314 REMARK 3 S21: 0.0689 S22: -0.0580 S23: -0.1434 REMARK 3 S31: -0.0634 S32: 0.1458 S33: 0.0078 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 526 THROUGH 605 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3526 6.4566 102.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.1260 REMARK 3 T33: 0.3875 T12: 0.0000 REMARK 3 T13: 0.0300 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.1143 L22: 1.6085 REMARK 3 L33: 1.0400 L12: -0.6966 REMARK 3 L13: -0.3556 L23: -0.1512 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: -0.1438 S13: -0.2947 REMARK 3 S21: 0.0617 S22: 0.0669 S23: -0.0114 REMARK 3 S31: 0.2399 S32: 0.2299 S33: 0.0716 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 606 THROUGH 664 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6275 6.0633 96.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.2078 REMARK 3 T33: 0.3939 T12: -0.0201 REMARK 3 T13: 0.0634 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 1.1815 L22: 1.4589 REMARK 3 L33: 1.5834 L12: -0.3503 REMARK 3 L13: -0.0886 L23: -0.3910 REMARK 3 S TENSOR REMARK 3 S11: -0.1327 S12: 0.0718 S13: -0.3185 REMARK 3 S21: 0.0385 S22: 0.0211 S23: -0.0143 REMARK 3 S31: 0.2328 S32: 0.0259 S33: 0.0962 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282416 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80690 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 46.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS PH=7.5, 0.2 M MAGNESIUM CHLORIDE, REMARK 280 40% (V/V) ETHYLENE GLYCOL, 15% (W/V) PEG 8000 (PH=6.5), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.25300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.61100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.61100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.62650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.61100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.61100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.87950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.61100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.61100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.62650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.61100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.61100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.87950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.25300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A -2 REMARK 465 ASN A -1 REMARK 465 GLY A 0 REMARK 465 ASN A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 ASP A 9 REMARK 465 ARG A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 923 O HOH A 1016 1.92 REMARK 500 OH TYR A 187 O HOH A 801 2.14 REMARK 500 O HOH A 823 O HOH A 1294 2.14 REMARK 500 O HOH A 1193 O HOH A 1301 2.17 REMARK 500 O HOH A 1199 O HOH A 1202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 152 83.19 -151.37 REMARK 500 ASP A 168 -73.33 80.15 REMARK 500 LEU A 307 -135.78 -119.72 REMARK 500 PHE A 318 -62.63 -94.34 REMARK 500 VAL A 631 -61.48 -103.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 501 NE2 REMARK 620 2 HIS A 505 NE2 105.7 REMARK 620 3 GLU A 562 OE1 94.5 106.5 REMARK 620 4 HOH A 923 O 117.0 128.4 97.9 REMARK 620 5 HOH A1016 O 92.3 105.6 143.9 48.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EYG RELATED DB: PDB DBREF 9FMA A -2 664 UNP Q7MXL5 Q7MXL5_PORGI 23 689 SEQRES 1 A 667 CYS ASN GLY ASN LYS GLY GLN THR ASN ASP THR ASP ARG SEQRES 2 A 667 LYS ARG GLU PRO VAL PRO ALA ILE ASP LEU SER ALA MET SEQRES 3 A 667 ASP THR SER VAL ARG PRO GLN ASP ASP PHE TYR ARG TYR SEQRES 4 A 667 CYS ASN GLY ASN TRP MET LYS ASN ASN PRO LEU LYS PRO SEQRES 5 A 667 ALA TYR SER ARG TYR GLY SER PHE ASP ILE LEU HIS ASP SEQRES 6 A 667 SER THR LEU GLU ARG VAL HIS LEU ILE VAL ASP ASN LEU SEQRES 7 A 667 ALA ALA GLY GLN HIS GLU VAL GLY THR ASN GLU TYR ARG SEQRES 8 A 667 ILE ALA THR LEU TYR ARG GLN ALA MET ASP SER ILE LYS SEQRES 9 A 667 ARG ASN LYS ASP GLY ALA ALA PRO LEU LYS GLU ASP LEU SEQRES 10 A 667 GLN LYS ILE GLU ALA ILE ALA ASP ARG ALA ALA MET VAL SEQRES 11 A 667 LYS TYR ALA ALA ALA LYS ASP ASN MET GLY GLY SER THR SEQRES 12 A 667 PHE PHE GLY SER TYR VAL TYR ALA ASP ALA LYS ASN SER SEQRES 13 A 667 GLU MET ASN ILE PHE HIS ILE THR GLN THR GLY LEU ALA SEQRES 14 A 667 LEU ASP ASN ARG ASP TYR TYR LEU LYS GLN ASP ALA LYS SEQRES 15 A 667 SER GLN GLN ILE ARG GLU ALA TYR VAL ALA TYR LEU ASN SEQRES 16 A 667 LYS ILE ALA LYS LEU ALA GLY TYR ASP ASP GLU ALA ALA SEQRES 17 A 667 THR ARG ILE ALA LYS ASN ALA MET LYS MET GLU THR GLU SEQRES 18 A 667 LEU ALA GLN ILE CYS TYR SER LYS GLU GLU LEU ARG ASP SEQRES 19 A 667 THR HIS ARG ASN TYR ASN LYS MET ALA VAL LYS GLU PHE SEQRES 20 A 667 THR ASN LYS TYR GLN GLY PHE ASP TRP THR THR TYR LEU SEQRES 21 A 667 ALA ASP ARG GLN LEU THR THR LEU GLU GLU TRP ASP VAL SEQRES 22 A 667 GLU GLN LEU ASP PHE PHE LYS LYS PHE ASP SER TRP PHE SEQRES 23 A 667 ALA LYS ALA ASP LEU ASN GLU MET ARG ASP TYR LEU LEU SEQRES 24 A 667 ALA GLY THR ILE SER GLY ALA ALA SER TYR LEU SER ASP SEQRES 25 A 667 ASP PHE GLU GLN ALA ARG PHE ASP PHE PHE GLY LYS THR SEQRES 26 A 667 LEU SER GLY THR THR GLU MET HIS PRO ARG TRP LYS ARG SEQRES 27 A 667 SER VAL GLY MET VAL SER SER PHE LEU GLY GLU ALA LEU SEQRES 28 A 667 GLY GLU VAL TYR VAL LYS GLN TYR PHE PRO PRO GLU ALA SEQRES 29 A 667 LYS GLU ARG MET LEU LYS LEU VAL LYS ASN LEU GLN THR SEQRES 30 A 667 ALA LEU GLY GLU ARG ILE ASN MET LEU THR TRP MET GLY SEQRES 31 A 667 ASP SER THR LYS MET LYS ALA GLN GLU LYS LEU ASN SER SEQRES 32 A 667 PHE ILE ILE LYS ILE GLY TYR PRO ASP LYS TRP LYS ASP SEQRES 33 A 667 TYR SER LYS MET GLU ILE LYS GLY ASP SER TYR TYR ALA SEQRES 34 A 667 ASP ILE LYS ARG ALA SER LYS TRP MET HIS ASP ASP ASN SEQRES 35 A 667 MET ALA ASP LEU GLY LYS THR VAL ASP ARG GLU ARG TRP SEQRES 36 A 667 LEU MET ASN PRO GLN ASP VAL ASN ALA TYR TYR ASN PRO SEQRES 37 A 667 THR THR ASN GLU ILE CYS PHE PRO ALA ALA ILE LEU GLN SEQRES 38 A 667 PRO PRO PHE PHE ASN MET ASP ALA ASP ASP ALA VAL ASN SEQRES 39 A 667 TYR GLY GLY ILE GLY VAL VAL ILE GLY HIS GLU MET THR SEQRES 40 A 667 HIS GLY PHE ASP ASP GLN GLY ARG ASN PHE ASP LYS ASP SEQRES 41 A 667 GLY ASN MET ILE ASN TRP TRP THR ALA GLU ASP ALA GLN SEQRES 42 A 667 LYS PHE GLU THR THR ALA ARG LYS LEU ALA ASP GLN PHE SEQRES 43 A 667 SER GLU ILE TYR VAL ALA ASP GLY VAL ARG ALA ASN GLY SEQRES 44 A 667 ASN MET THR LEU GLY GLU ASN ILE ALA ASP GLN GLY GLY SEQRES 45 A 667 LEU LEU ILE SER TYR LEU ALA PHE ARG ASN ALA ALA LYS SEQRES 46 A 667 GLY GLU VAL MET GLU GLU ILE ASP GLY PHE THR PRO ASP SEQRES 47 A 667 GLN ARG PHE PHE ILE GLY TYR ALA ARG LEU TRP GLY GLN SEQRES 48 A 667 ASN ILE ARG PRO GLU GLU VAL LEU ARG LEU THR GLN ILE SEQRES 49 A 667 ASP VAL HIS SER LEU GLY GLU LEU ARG VAL ASN GLN ALA SEQRES 50 A 667 LEU ARG ASN ILE GLU ALA PHE TYR GLU ALA PHE ASN ILE SEQRES 51 A 667 GLN PRO THR ASP LYS MET TYR LEU GLU PRO GLU LYS ARG SEQRES 52 A 667 VAL VAL VAL TRP HET EDO A 701 4 HET ZN A 702 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *506(H2 O) HELIX 1 AA1 ASP A 19 MET A 23 5 5 HELIX 2 AA2 ASP A 32 ASN A 45 1 14 HELIX 3 AA3 SER A 56 ALA A 76 1 21 HELIX 4 AA4 THR A 84 MET A 97 1 14 HELIX 5 AA5 ASP A 98 GLY A 106 1 9 HELIX 6 AA6 ALA A 107 PRO A 109 5 3 HELIX 7 AA7 LEU A 110 ALA A 119 1 10 HELIX 8 AA8 ASP A 122 ASN A 135 1 14 HELIX 9 AA9 ARG A 170 LYS A 175 1 6 HELIX 10 AB1 ASP A 177 ALA A 198 1 22 HELIX 11 AB2 ASP A 201 CYS A 223 1 23 HELIX 12 AB3 SER A 225 ARG A 230 1 6 HELIX 13 AB4 VAL A 241 TYR A 248 1 8 HELIX 14 AB5 ASP A 252 ARG A 260 1 9 HELIX 15 AB6 GLN A 272 ALA A 286 1 15 HELIX 16 AB7 ASP A 287 ALA A 304 1 18 HELIX 17 AB8 SER A 308 GLY A 320 1 13 HELIX 18 AB9 GLY A 320 GLY A 325 1 6 HELIX 19 AC1 PRO A 331 LEU A 344 1 14 HELIX 20 AC2 LEU A 344 PHE A 357 1 14 HELIX 21 AC3 PRO A 358 LEU A 383 1 26 HELIX 22 AC4 GLY A 387 SER A 400 1 14 HELIX 23 AC5 SER A 423 ALA A 441 1 19 HELIX 24 AC6 ALA A 475 LEU A 477 5 3 HELIX 25 AC7 ASP A 487 GLY A 494 1 8 HELIX 26 AC8 GLY A 494 GLY A 506 1 13 HELIX 27 AC9 GLN A 510 PHE A 514 5 5 HELIX 28 AD1 THR A 525 GLU A 545 1 21 HELIX 29 AD2 THR A 559 LYS A 582 1 24 HELIX 30 AD3 THR A 593 LEU A 605 1 13 HELIX 31 AD4 ARG A 611 ASP A 622 1 12 HELIX 32 AD5 LEU A 626 GLN A 633 1 8 HELIX 33 AD6 ALA A 634 ASN A 637 5 4 HELIX 34 AD7 ILE A 638 ASN A 646 1 9 HELIX 35 AD8 GLU A 656 ARG A 660 5 5 SHEET 1 AA1 2 ARG A 53 GLY A 55 0 SHEET 2 AA1 2 GLN A 608 ILE A 610 -1 O ASN A 609 N TYR A 54 SHEET 1 AA2 4 GLY A 143 ASP A 149 0 SHEET 2 AA2 4 ASN A 152 THR A 161 -1 O HIS A 159 N TYR A 145 SHEET 3 AA2 4 GLU A 267 VAL A 270 1 O ASP A 269 N ILE A 160 SHEET 4 AA2 4 LYS A 238 ALA A 240 -1 N MET A 239 O TRP A 268 SHEET 1 AA3 3 ILE A 402 GLY A 406 0 SHEET 2 AA3 3 GLU A 469 PRO A 473 1 O PHE A 472 N GLY A 406 SHEET 3 AA3 3 TYR A 462 ASN A 464 -1 N TYR A 462 O CYS A 471 SHEET 1 AA4 2 TYR A 547 ALA A 549 0 SHEET 2 AA4 2 VAL A 552 ARG A 553 -1 O VAL A 552 N VAL A 548 LINK NE2 HIS A 501 ZN ZN A 702 1555 1555 2.21 LINK NE2 HIS A 505 ZN ZN A 702 1555 1555 2.21 LINK OE1 GLU A 562 ZN ZN A 702 1555 1555 2.00 LINK ZN ZN A 702 O HOH A 923 1555 1555 2.08 LINK ZN ZN A 702 O HOH A1016 1555 1555 2.51 CISPEP 1 PRO A 479 PRO A 480 0 4.66 CRYST1 93.222 93.222 182.506 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005479 0.00000 CONECT 3955 5295 CONECT 3989 5295 CONECT 4441 5295 CONECT 5291 5292 5293 CONECT 5292 5291 CONECT 5293 5291 5294 CONECT 5294 5293 CONECT 5295 3955 3989 4441 5418 CONECT 5295 5511 CONECT 5418 5295 CONECT 5511 5295 MASTER 437 0 2 35 11 0 0 6 5783 1 11 52 END