data_9FN3 # _entry.id 9FN3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9FN3 pdb_00009fn3 10.2210/pdb9fn3/pdb WWPDB D_1292137683 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2025-02-05 2 'Structure model' 2 0 2025-02-12 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Ligand geometry' ;The geometry of the three components (GDP, A1ID5, and A1IY6) were updated. The restraints were generated in phenix.elbow in the previous version. In the new version, improved geometry restraints from Acedrug were used. ; # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Author supporting evidence' 4 2 'Structure model' 'Data collection' 5 2 'Structure model' 'Database references' 6 2 'Structure model' 'Derived calculations' 7 2 'Structure model' 'Refinement description' 8 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 2 'Structure model' entity 6 2 'Structure model' ndb_struct_na_base_pair 7 2 'Structure model' ndb_struct_na_base_pair_step 8 2 'Structure model' pdbx_entity_instance_feature 9 2 'Structure model' pdbx_entity_nonpoly 10 2 'Structure model' pdbx_nonpoly_scheme 11 2 'Structure model' pdbx_poly_seq_scheme 12 2 'Structure model' pdbx_refine_tls 13 2 'Structure model' pdbx_refine_tls_group 14 2 'Structure model' pdbx_struct_conn_angle 15 2 'Structure model' pdbx_validate_close_contact 16 2 'Structure model' pdbx_validate_symm_contact 17 2 'Structure model' refine 18 2 'Structure model' refine_hist 19 2 'Structure model' refine_ls_restr 20 2 'Structure model' refine_ls_shell 21 2 'Structure model' software 22 2 'Structure model' struct_asym 23 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 2 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 3 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 4 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 5 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 6 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 7 2 'Structure model' '_atom_site_anisotrop.id' 8 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 9 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 10 2 'Structure model' '_entity.formula_weight' 11 2 'Structure model' '_entity.pdbx_description' 12 2 'Structure model' '_entity.pdbx_number_of_molecules' 13 2 'Structure model' '_ndb_struct_na_base_pair.buckle' 14 2 'Structure model' '_ndb_struct_na_base_pair.hbond_type_28' 15 2 'Structure model' '_ndb_struct_na_base_pair.opening' 16 2 'Structure model' '_ndb_struct_na_base_pair.propeller' 17 2 'Structure model' '_ndb_struct_na_base_pair.shear' 18 2 'Structure model' '_ndb_struct_na_base_pair.stagger' 19 2 'Structure model' '_ndb_struct_na_base_pair.stretch' 20 2 'Structure model' '_ndb_struct_na_base_pair_step.helical_rise' 21 2 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist' 22 2 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 23 2 'Structure model' '_ndb_struct_na_base_pair_step.rise' 24 2 'Structure model' '_ndb_struct_na_base_pair_step.roll' 25 2 'Structure model' '_ndb_struct_na_base_pair_step.shift' 26 2 'Structure model' '_ndb_struct_na_base_pair_step.slide' 27 2 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 28 2 'Structure model' '_ndb_struct_na_base_pair_step.tip' 29 2 'Structure model' '_ndb_struct_na_base_pair_step.twist' 30 2 'Structure model' '_ndb_struct_na_base_pair_step.x_displacement' 31 2 'Structure model' '_ndb_struct_na_base_pair_step.y_displacement' 32 2 'Structure model' '_pdbx_entity_nonpoly.comp_id' 33 2 'Structure model' '_pdbx_entity_nonpoly.name' 34 2 'Structure model' '_pdbx_nonpoly_scheme.auth_mon_id' 35 2 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num' 36 2 'Structure model' '_pdbx_nonpoly_scheme.entity_id' 37 2 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 38 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 39 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_seq_num' 40 2 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 41 2 'Structure model' '_pdbx_refine_tls.L[1][1]' 42 2 'Structure model' '_pdbx_refine_tls.L[1][2]' 43 2 'Structure model' '_pdbx_refine_tls.L[1][3]' 44 2 'Structure model' '_pdbx_refine_tls.L[2][2]' 45 2 'Structure model' '_pdbx_refine_tls.L[2][3]' 46 2 'Structure model' '_pdbx_refine_tls.L[3][3]' 47 2 'Structure model' '_pdbx_refine_tls.S[1][1]' 48 2 'Structure model' '_pdbx_refine_tls.S[1][2]' 49 2 'Structure model' '_pdbx_refine_tls.S[1][3]' 50 2 'Structure model' '_pdbx_refine_tls.S[2][1]' 51 2 'Structure model' '_pdbx_refine_tls.S[2][2]' 52 2 'Structure model' '_pdbx_refine_tls.S[2][3]' 53 2 'Structure model' '_pdbx_refine_tls.S[3][1]' 54 2 'Structure model' '_pdbx_refine_tls.S[3][2]' 55 2 'Structure model' '_pdbx_refine_tls.S[3][3]' 56 2 'Structure model' '_pdbx_refine_tls.T[1][1]' 57 2 'Structure model' '_pdbx_refine_tls.T[1][2]' 58 2 'Structure model' '_pdbx_refine_tls.T[1][3]' 59 2 'Structure model' '_pdbx_refine_tls.T[2][2]' 60 2 'Structure model' '_pdbx_refine_tls.T[2][3]' 61 2 'Structure model' '_pdbx_refine_tls.T[3][3]' 62 2 'Structure model' '_pdbx_refine_tls.origin_x' 63 2 'Structure model' '_pdbx_refine_tls.origin_y' 64 2 'Structure model' '_pdbx_refine_tls.origin_z' 65 2 'Structure model' '_pdbx_refine_tls_group.beg_label_asym_id' 66 2 'Structure model' '_pdbx_refine_tls_group.end_auth_seq_id' 67 2 'Structure model' '_pdbx_refine_tls_group.end_label_asym_id' 68 2 'Structure model' '_pdbx_refine_tls_group.selection_details' 69 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 70 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 71 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 72 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 73 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 74 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 75 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 76 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 77 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 78 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 79 2 'Structure model' '_pdbx_struct_conn_angle.value' 80 2 'Structure model' '_pdbx_validate_symm_contact.dist' 81 2 'Structure model' '_refine.B_iso_mean' 82 2 'Structure model' '_refine.details' 83 2 'Structure model' '_refine.ls_R_factor_R_free' 84 2 'Structure model' '_refine.ls_R_factor_R_work' 85 2 'Structure model' '_refine.ls_R_factor_obs' 86 2 'Structure model' '_refine.overall_SU_ML' 87 2 'Structure model' '_refine.pdbx_overall_phase_error' 88 2 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 89 2 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 90 2 'Structure model' '_refine_ls_restr.dev_ideal' 91 2 'Structure model' '_refine_ls_restr.number' 92 2 'Structure model' '_refine_ls_shell.R_factor_R_free' 93 2 'Structure model' '_refine_ls_shell.R_factor_R_work' 94 2 'Structure model' '_software.classification' 95 2 'Structure model' '_software.name' 96 2 'Structure model' '_software.version' 97 2 'Structure model' '_struct_asym.entity_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9FN3 _pdbx_database_status.recvd_initial_deposition_date 2024-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category RNA-Puzzles _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Crystal structure of the alkyltransferase ribozyme SAMURI co-crystalized with SAM' _pdbx_database_related.db_id 9FN2 _pdbx_database_related.content_type unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 claudia.hoebartner@uni-wuerzburg.de Claudia Hoebartner ? 'principal investigator/group leader' 0000-0002-4548-2299 3 hermann.schindelin@virchow.uni-wuerzburg.de Hermann Schindelin ? 'principal investigator/group leader' 0000-0002-2067-3187 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, H.A.' 1 0000-0002-0586-0742 'Okuda, T.' 2 0000-0002-2136-6525 'Lenz, A.K.' 3 0009-0006-2700-2083 'Scheitl, C.P.M.' 4 0009-0000-7822-2066 'Schindelin, H.' 5 0000-0002-2067-3187 'Hoebartner, C.' 6 0000-0002-4548-2299 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary Nat.Chem.Biol. ? ? 1552-4469 ? ? ? ? ? ? 'Structure and catalytic activity of the SAM-utilizing ribozyme SAMURI.' 2025 ? 10.1038/s41589-024-01808-w 39779902 ? ? ? ? ? ? ? ? ? UK ? ? 1 'Nat Chem' ? ? 1755-4349 ? ? 15 ? 1523 1531 'A SAM analogue-utilizing ribozyme for site-specific RNA alkylation in living cells.' 2023 ? 10.1093/nar/gkab256 37667013 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, H.A.' 1 0000-0002-0586-0742 primary 'Okuda, T.' 2 0000-0002-2136-6525 primary 'Lenz, A.K.' 3 0009-0006-2700-2083 primary 'Scheitl, C.P.M.' 4 0009-0000-7822-2066 primary 'Schindelin, H.' 5 0000-0002-2067-3187 primary 'Hobartner, C.' 6 0000-0002-4548-2299 1 'Okuda, T.' 7 0000-0002-2136-6525 1 'Lenz, A.K.' 8 0009-0006-2700-2083 1 'Seitz, F.' 9 0009-0004-7286-7292 1 'Vogel, J.' 10 ? 1 'Hoebartner, C.' 11 0000-0002-4548-2299 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn SAMURI-ProSeDMA 18834.189 2 ? ? ? 'In vitro transcription with T7 RNA polymerase; propargylation occurred during crystallization process' 2 non-polymer syn Se-2,6-diaminopurinribosyl-selenohomocysteineamide 445.336 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GDP)GAGUCAUGGCUCAGGGCUGUUCGCAGCCGCUGCAGUCAGUCGAAAGACUG(A1ID5)GACUCC' _entity_poly.pdbx_seq_one_letter_code_can GGAGUCAUGGCUCAGGGCUGUUCGCAGCCGCUGCAGUCAGUCGAAAGACUGXGACUCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 Se-2,6-diaminopurinribosyl-selenohomocysteineamide A1IY6 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GDP n 1 2 G n 1 3 A n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 U n 1 9 G n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 C n 1 19 U n 1 20 G n 1 21 U n 1 22 U n 1 23 C n 1 24 G n 1 25 C n 1 26 A n 1 27 G n 1 28 C n 1 29 C n 1 30 G n 1 31 C n 1 32 U n 1 33 G n 1 34 C n 1 35 A n 1 36 G n 1 37 U n 1 38 C n 1 39 A n 1 40 G n 1 41 U n 1 42 C n 1 43 G n 1 44 A n 1 45 A n 1 46 A n 1 47 G n 1 48 A n 1 49 C n 1 50 U n 1 51 G n 1 52 A1ID5 n 1 53 G n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 58 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A1ID5 'RNA linking' n ;N3-propargyl adenosine-5'-monophosphate ; '[(2R,3S,4R,5R)-5-(6-azanyl-3-prop-2-ynyl-purin-3-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' 'C13 H17 N5 O7 P 1' 386.277 A1IY6 'RNA OH 3 prime terminus' . Se-2,6-diaminopurinribosyl-selenohomocysteineamide '(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylselanyl]butanamide; SeDHA' 'C14 H22 N8 O4 Se' 445.336 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GDP 1 1 1 GDP GDP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 G 27 27 27 G G A . n A 1 28 C 28 28 28 C C A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 U 32 32 32 U U A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 A 35 35 35 A A A . n A 1 36 G 36 36 36 G G A . n A 1 37 U 37 37 37 U U A . n A 1 38 C 38 38 38 C C A . n A 1 39 A 39 39 39 A A A . n A 1 40 G 40 40 40 G G A . n A 1 41 U 41 41 41 U U A . n A 1 42 C 42 42 42 C C A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 G 47 47 47 G G A . n A 1 48 A 48 48 48 A A A . n A 1 49 C 49 49 49 C C A . n A 1 50 U 50 50 50 U U A . n A 1 51 G 51 51 51 G G A . n A 1 52 A1ID5 52 52 52 A1ID5 P7X A . n A 1 53 G 53 53 53 G G A . n A 1 54 A 54 54 54 A A A . n A 1 55 C 55 55 55 C C A . n A 1 56 U 56 56 56 U U A . n A 1 57 C 57 57 57 C C A . n A 1 58 C 58 58 58 C C A . n B 1 1 GDP 1 1 1 GDP GDP B . n B 1 2 G 2 2 2 G G B . n B 1 3 A 3 3 3 A A B . n B 1 4 G 4 4 4 G G B . n B 1 5 U 5 5 5 U U B . n B 1 6 C 6 6 6 C C B . n B 1 7 A 7 7 7 A A B . n B 1 8 U 8 8 8 U U B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 C 11 11 11 C C B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 G 17 17 17 G G B . n B 1 18 C 18 18 18 C C B . n B 1 19 U 19 19 19 U U B . n B 1 20 G 20 20 20 G G B . n B 1 21 U 21 21 21 U U B . n B 1 22 U 22 22 22 U U B . n B 1 23 C 23 23 23 C C B . n B 1 24 G 24 24 24 G G B . n B 1 25 C 25 25 25 C C B . n B 1 26 A 26 26 26 A A B . n B 1 27 G 27 27 27 G G B . n B 1 28 C 28 28 28 C C B . n B 1 29 C 29 29 29 C C B . n B 1 30 G 30 30 30 G G B . n B 1 31 C 31 31 31 C C B . n B 1 32 U 32 32 32 U U B . n B 1 33 G 33 33 33 G G B . n B 1 34 C 34 34 34 C C B . n B 1 35 A 35 35 35 A A B . n B 1 36 G 36 36 36 G G B . n B 1 37 U 37 37 37 U U B . n B 1 38 C 38 38 38 C C B . n B 1 39 A 39 39 39 A A B . n B 1 40 G 40 40 40 G G B . n B 1 41 U 41 41 41 U U B . n B 1 42 C 42 42 42 C C B . n B 1 43 G 43 43 43 G G B . n B 1 44 A 44 44 44 A A B . n B 1 45 A 45 45 45 A A B . n B 1 46 A 46 46 46 A A B . n B 1 47 G 47 47 47 G G B . n B 1 48 A 48 48 48 A A B . n B 1 49 C 49 49 49 C C B . n B 1 50 U 50 50 50 U U B . n B 1 51 G 51 51 51 G G B . n B 1 52 A1ID5 52 52 52 A1ID5 P7X B . n B 1 53 G 53 53 53 G G B . n B 1 54 A 54 54 54 A A B . n B 1 55 C 55 55 55 C C B . n B 1 56 U 56 56 56 U U B . n B 1 57 C 57 57 57 C C B . n B 1 58 C 58 58 58 C C B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A1ID5 ? ? A1ID5 ? ? 'SUBJECT OF INVESTIGATION' ? 2 A1IY6 ? ? A1IY6 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1IY6 1 101 101 A1IY6 SED A . D 3 MG 1 102 102 MG MG A . E 3 MG 1 103 103 MG MG A . F 3 MG 1 104 1 MG MG A . G 2 A1IY6 1 101 101 A1IY6 SED B . H 3 MG 1 102 102 MG MG B . I 3 MG 1 103 103 MG MG B . J 4 HOH 1 201 5 HOH HOH A . J 4 HOH 2 202 32 HOH HOH A . J 4 HOH 3 203 33 HOH HOH A . J 4 HOH 4 204 2 HOH HOH A . J 4 HOH 5 205 10 HOH HOH A . J 4 HOH 6 206 31 HOH HOH A . J 4 HOH 7 207 30 HOH HOH A . J 4 HOH 8 208 14 HOH HOH A . J 4 HOH 9 209 27 HOH HOH A . J 4 HOH 10 210 1 HOH HOH A . J 4 HOH 11 211 25 HOH HOH A . J 4 HOH 12 212 26 HOH HOH A . J 4 HOH 13 213 6 HOH HOH A . J 4 HOH 14 214 18 HOH HOH A . J 4 HOH 15 215 13 HOH HOH A . J 4 HOH 16 216 23 HOH HOH A . J 4 HOH 17 217 22 HOH HOH A . J 4 HOH 18 218 19 HOH HOH A . K 4 HOH 1 201 17 HOH HOH B . K 4 HOH 2 202 16 HOH HOH B . K 4 HOH 3 203 12 HOH HOH B . K 4 HOH 4 204 28 HOH HOH B . K 4 HOH 5 205 29 HOH HOH B . K 4 HOH 6 206 20 HOH HOH B . K 4 HOH 7 207 3 HOH HOH B . K 4 HOH 8 208 15 HOH HOH B . K 4 HOH 9 209 7 HOH HOH B . K 4 HOH 10 210 4 HOH HOH B . K 4 HOH 11 211 24 HOH HOH B . K 4 HOH 12 212 21 HOH HOH B . K 4 HOH 13 213 11 HOH HOH B . K 4 HOH 14 214 9 HOH HOH B . K 4 HOH 15 215 8 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.2_5419 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? 1.20.1_4487 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.4.1 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9FN3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 75.444 _cell.length_a_esd ? _cell.length_b 75.444 _cell.length_b_esd ? _cell.length_c 72.251 _cell.length_c_esd ? _cell.volume 411238.035 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9FN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall 'P 4c' _symmetry.space_group_name_H-M 'P 42' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9FN3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 70 _exptl_crystal.description 'Rod shaped' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;50 mM MES pH6.5 100 mM NaCl 100 mM LiCl 15 mM MgCl2 39% MPD ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-07-11 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, DESY BEAMLINE P11' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline P11 _diffrn_source.pdbx_synchrotron_site 'PETRA III, DESY' # _reflns.B_iso_Wilson_estimate 126.4 _reflns.entry_id 9FN3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.90 _reflns.d_resolution_low 42.92 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18088 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.98 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.065 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.08 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2901 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.6 _reflns_shell.pdbx_chi_squared 0.71 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.270 _reflns_shell.pdbx_Rpim_I_all 0.593 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.591 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.112 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 52.85 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9FN3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.90 _refine.ls_d_res_low 42.92 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16289 _refine.ls_number_reflns_R_free 725 _refine.ls_number_reflns_R_work 15564 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.53 _refine.ls_percent_reflns_R_free 4.45 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2015 _refine.ls_R_factor_R_free 0.2240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2005 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.91 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details '4.45% random' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.3595 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2678 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 42.92 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 2590 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2498 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0018 ? 2848 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.5521 ? 4434 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0273 ? 590 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0018 ? 124 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 24.0165 ? 1756 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.90 3.12 . . 126 2522 75.98 . . . . 0.3437 . . . . . . . . . . . 0.4033 'X-RAY DIFFRACTION' 3.13 3.44 . . 127 3078 91.13 . . . . 0.2283 . . . . . . . . . . . 0.2106 'X-RAY DIFFRACTION' 3.44 3.93 . . 155 3237 96.69 . . . . 0.1995 . . . . . . . . . . . 0.2092 'X-RAY DIFFRACTION' 3.94 4.96 . . 146 3384 98.91 . . . . 0.1736 . . . . . . . . . . . 0.2100 'X-RAY DIFFRACTION' 4.96 42.92 . . 171 3343 99.69 . . . . 0.1488 . . . . . . . . . . . 0.1786 # _struct.entry_id 9FN3 _struct.title 'Crystal structure of the alkyltransferase ribozyme SAMURI co-crystalized with ProSeDMA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9FN3 _struct_keywords.text 'Ribozyme, SAM-analogue, alkyltransferase, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9FN3 _struct_ref.pdbx_db_accession 9FN3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9FN3 A 1 ? 58 ? 9FN3 1 ? 58 ? 1 58 2 1 9FN3 B 1 ? 58 ? 9FN3 1 ? 58 ? 1 58 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,J 2 1 B,G,H,I,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GDP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GDP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A G 51 "O3'" ? ? ? 1_555 A A1ID5 52 P ? ? A G 51 A A1ID5 52 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? A A1ID5 52 "O3'" ? ? ? 1_555 A G 53 P ? ? A A1ID5 52 A G 53 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? B GDP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GDP 1 B G 2 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale5 covale both ? B G 51 "O3'" ? ? ? 1_555 B A1ID5 52 P ? ? B G 51 B A1ID5 52 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale both ? B A1ID5 52 "O3'" ? ? ? 1_555 B G 53 P ? ? B A1ID5 52 B G 53 1_555 ? ? ? ? ? ? ? 1.604 ? ? metalc1 metalc ? ? A A 35 OP2 ? ? ? 1_555 D MG . MG ? ? A A 35 A MG 102 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc2 metalc ? ? A G 36 OP2 ? ? ? 1_555 D MG . MG ? ? A G 36 A MG 102 1_555 ? ? ? ? ? ? ? 2.815 ? ? metalc3 metalc ? ? A G 53 OP2 ? ? ? 1_555 E MG . MG ? ? A G 53 A MG 103 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 A HOH 213 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 A HOH 216 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 202 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 208 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 209 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 215 1_555 ? ? ? ? ? ? ? 2.501 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 201 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 204 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 205 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 210 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 B HOH 207 1_545 ? ? ? ? ? ? ? 1.909 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 B HOH 210 1_545 ? ? ? ? ? ? ? 2.070 ? ? metalc19 metalc ? ? B U 32 OP2 ? ? ? 1_555 I MG . MG ? ? B U 32 B MG 103 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc20 metalc ? ? B A 35 OP2 ? ? ? 1_555 H MG . MG ? ? B A 35 B MG 102 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc21 metalc ? ? B G 36 OP2 ? ? ? 1_555 H MG . MG ? ? B G 36 B MG 102 1_555 ? ? ? ? ? ? ? 2.506 ? ? metalc22 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 209 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc23 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 214 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc24 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 215 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc25 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 202 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc26 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 204 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc27 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 208 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc28 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 211 1_555 ? ? ? ? ? ? ? 2.075 ? ? hydrog1 hydrog ? ? A GDP 1 N1 ? ? ? 1_555 A C 58 O2 ? ? A GDP 1 A C 58 1_555 ? ? ? ? ? ? 'GDP-C MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 2 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 2 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 2 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 3 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 3 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 4 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 4 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 4 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 5 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 5 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 53 N2 ? ? A C 6 A G 53 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog13 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 37 O2 ? ? A G 9 A U 37 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 10 N2 ? ? ? 1_555 A U 12 O4 ? ? A G 10 A U 12 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 10 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 10 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 10 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 11 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 11 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 11 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N4 ? ? ? 1_555 A A1ID5 52 N1 ? ? A C 11 A A1ID5 52 1_555 ? ? ? ? ? ? 'C-A1ID5 MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 12 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 12 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 13 A G 30 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog25 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 13 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 13 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 13 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 14 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 14 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 15 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 15 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 15 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 16 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 16 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 16 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 31 N3 ? ? A G 16 A C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog37 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 17 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 17 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 17 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 18 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 18 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 18 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 19 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 19 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 20 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 20 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 20 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 21 O2 ? ? ? 1_555 A G 24 N1 ? ? A U 21 A G 24 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 30 N1 ? ? ? 1_555 A G 33 O6 ? ? A G 30 A G 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? A G 30 N2 ? ? ? 1_555 A G 33 N7 ? ? A G 30 A G 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? A G 36 O6 ? ? ? 1_555 A A1ID5 52 N6 ? ? A G 36 A A1ID5 52 1_555 ? ? ? ? ? ? 'G-A1ID5 MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A1ID5 52 N6 ? ? A U 37 A A1ID5 52 1_555 ? ? ? ? ? ? 'U-A1ID5 MISPAIR' ? ? ? hydrog53 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 38 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 38 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 38 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 50 N3 ? ? A A 39 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 50 O4 ? ? A A 39 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 40 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 40 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 40 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 40 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 40 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 40 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 41 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 41 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 46 N7 ? ? A G 43 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog67 hydrog ? ? B GDP 1 N1 ? ? ? 1_555 B C 58 O2 ? ? B GDP 1 B C 58 1_555 ? ? ? ? ? ? 'GDP-C MISPAIR' ? ? ? hydrog68 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 2 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 2 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 2 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 56 N3 ? ? B A 3 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 56 O4 ? ? B A 3 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 55 N3 ? ? B G 4 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 55 O2 ? ? B G 4 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 55 N4 ? ? B G 4 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 54 N1 ? ? B U 5 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 54 N6 ? ? B U 5 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 6 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 6 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 6 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 9 N1 ? ? ? 1_555 B U 37 O2 ? ? B G 9 B U 37 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog82 hydrog ? ? B G 10 N2 ? ? ? 1_555 B U 12 O4 ? ? B G 10 B U 12 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog83 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 34 N3 ? ? B G 10 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 34 O2 ? ? B G 10 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 34 N4 ? ? B G 10 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 36 N1 ? ? B C 11 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 36 O6 ? ? B C 11 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 36 N2 ? ? B C 11 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 11 N4 ? ? ? 1_555 B A1ID5 52 N1 ? ? B C 11 B A1ID5 52 1_555 ? ? ? ? ? ? 'C-A1ID5 MISPAIR' ? ? ? hydrog90 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 12 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 12 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 13 B G 30 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog93 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 13 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 13 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 13 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B A 14 N1 ? ? ? 1_555 B U 32 N3 ? ? B A 14 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B A 14 N6 ? ? ? 1_555 B U 32 O4 ? ? B A 14 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 31 N3 ? ? B G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 31 O2 ? ? B G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 15 O6 ? ? ? 1_555 B C 31 N4 ? ? B G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 16 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 16 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 16 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 16 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B G 16 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 16 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 16 N2 ? ? ? 1_555 B C 31 N3 ? ? B G 16 B C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog105 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 28 N3 ? ? B G 17 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 28 O2 ? ? B G 17 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 28 N4 ? ? B G 17 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 18 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 18 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 18 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 19 O2 ? ? ? 1_555 B A 26 N6 ? ? B U 19 B A 26 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog112 hydrog ? ? B G 20 N7 ? ? ? 1_555 B G 24 N1 ? ? B G 20 B G 24 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog113 hydrog ? ? B G 20 O6 ? ? ? 1_555 B G 24 N2 ? ? B G 20 B G 24 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog114 hydrog ? ? B G 30 N1 ? ? ? 1_555 B G 33 O6 ? ? B G 30 B G 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog115 hydrog ? ? B G 30 N2 ? ? ? 1_555 B G 33 N7 ? ? B G 30 B G 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog116 hydrog ? ? B G 36 O6 ? ? ? 1_555 B A1ID5 52 N6 ? ? B G 36 B A1ID5 52 1_555 ? ? ? ? ? ? 'G-A1ID5 MISPAIR' ? ? ? hydrog117 hydrog ? ? B C 38 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 38 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B C 38 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 38 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B C 38 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 38 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B A 39 N1 ? ? ? 1_555 B U 50 N3 ? ? B A 39 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B A 39 N6 ? ? ? 1_555 B U 50 O4 ? ? B A 39 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B G 40 N1 ? ? ? 1_555 B C 49 N3 ? ? B G 40 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B G 40 N2 ? ? ? 1_555 B C 49 O2 ? ? B G 40 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 40 O6 ? ? ? 1_555 B C 49 N4 ? ? B G 40 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B U 41 N3 ? ? ? 1_555 B A 48 N1 ? ? B U 41 B A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B U 41 O4 ? ? ? 1_555 B A 48 N6 ? ? B U 41 B A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 47 N1 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 47 O6 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 47 N2 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B G 43 N2 ? ? ? 1_555 B A 46 N7 ? ? B G 43 B A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 35 ? A A 35 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP2 ? A G 36 ? A G 36 ? 1_555 67.0 ? 2 OP2 ? A A 35 ? A A 35 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 203 ? 1_555 155.0 ? 3 OP2 ? A G 36 ? A G 36 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 203 ? 1_555 92.2 ? 4 OP2 ? A A 35 ? A A 35 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 212 ? 1_555 80.5 ? 5 OP2 ? A G 36 ? A G 36 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 212 ? 1_555 77.7 ? 6 O ? J HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 212 ? 1_555 81.7 ? 7 OP2 ? A A 35 ? A A 35 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 122.9 ? 8 OP2 ? A G 36 ? A G 36 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 66.2 ? 9 O ? J HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 53.2 ? 10 O ? J HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 118.3 ? 11 OP2 ? A A 35 ? A A 35 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 121.1 ? 12 OP2 ? A G 36 ? A G 36 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 168.0 ? 13 O ? J HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 81.8 ? 14 O ? J HOH . ? A HOH 212 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 111.4 ? 15 O ? J HOH . ? A HOH 213 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 102.1 ? 16 OP2 ? A G 53 ? A G 53 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 202 ? 1_555 153.4 ? 17 OP2 ? A G 53 ? A G 53 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 63.7 ? 18 O ? J HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 98.7 ? 19 OP2 ? A G 53 ? A G 53 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 209 ? 1_555 76.1 ? 20 O ? J HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 209 ? 1_555 78.9 ? 21 O ? J HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 209 ? 1_555 68.0 ? 22 OP2 ? A G 53 ? A G 53 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 211 ? 1_555 93.7 ? 23 O ? J HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 211 ? 1_555 109.9 ? 24 O ? J HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 211 ? 1_555 101.8 ? 25 O ? J HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 211 ? 1_555 167.9 ? 26 OP2 ? A G 53 ? A G 53 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 215 ? 1_555 115.3 ? 27 O ? J HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 215 ? 1_555 74.9 ? 28 O ? J HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 215 ? 1_555 161.7 ? 29 O ? J HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 215 ? 1_555 93.7 ? 30 O ? J HOH . ? A HOH 211 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? A HOH 215 ? 1_555 96.5 ? 31 O ? J HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 204 ? 1_555 76.3 ? 32 O ? J HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 205 ? 1_555 71.8 ? 33 O ? J HOH . ? A HOH 204 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 205 ? 1_555 79.9 ? 34 O ? J HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 210 ? 1_555 119.7 ? 35 O ? J HOH . ? A HOH 204 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 210 ? 1_555 106.5 ? 36 O ? J HOH . ? A HOH 205 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 210 ? 1_555 167.6 ? 37 O ? J HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_545 137.6 ? 38 O ? J HOH . ? A HOH 204 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_545 101.0 ? 39 O ? J HOH . ? A HOH 205 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_545 66.1 ? 40 O ? J HOH . ? A HOH 210 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_545 101.9 ? 41 O ? J HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 210 ? 1_545 92.2 ? 42 O ? J HOH . ? A HOH 204 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 210 ? 1_545 154.6 ? 43 O ? J HOH . ? A HOH 205 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 210 ? 1_545 74.9 ? 44 O ? J HOH . ? A HOH 210 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 210 ? 1_545 98.9 ? 45 O ? K HOH . ? B HOH 207 ? 1_545 MG ? F MG . ? A MG 104 ? 1_555 O ? K HOH . ? B HOH 210 ? 1_545 72.2 ? 46 OP2 ? B U 32 ? B U 32 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 202 ? 1_555 145.9 ? 47 OP2 ? B U 32 ? B U 32 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 204 ? 1_555 136.8 ? 48 O ? K HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 204 ? 1_555 62.3 ? 49 OP2 ? B U 32 ? B U 32 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 78.2 ? 50 O ? K HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 83.7 ? 51 O ? K HOH . ? B HOH 204 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 74.5 ? 52 OP2 ? B U 32 ? B U 32 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 211 ? 1_555 111.4 ? 53 O ? K HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 211 ? 1_555 94.0 ? 54 O ? K HOH . ? B HOH 204 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 211 ? 1_555 89.4 ? 55 O ? K HOH . ? B HOH 208 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 211 ? 1_555 162.8 ? 56 OP2 ? B A 35 ? B A 35 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 OP2 ? B G 36 ? B G 36 ? 1_555 104.3 ? 57 OP2 ? B A 35 ? B A 35 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 80.9 ? 58 OP2 ? B G 36 ? B G 36 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 73.1 ? 59 OP2 ? B A 35 ? B A 35 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 214 ? 1_555 86.7 ? 60 OP2 ? B G 36 ? B G 36 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 214 ? 1_555 150.8 ? 61 O ? K HOH . ? B HOH 209 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 214 ? 1_555 136.0 ? 62 OP2 ? B A 35 ? B A 35 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 215 ? 1_555 164.2 ? 63 OP2 ? B G 36 ? B G 36 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 215 ? 1_555 88.1 ? 64 O ? K HOH . ? B HOH 209 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 215 ? 1_555 93.8 ? 65 O ? K HOH . ? B HOH 214 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 215 ? 1_555 86.9 ? # _pdbx_entry_details.entry_id 9FN3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 18 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O2'" _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 U _pdbx_validate_symm_contact.auth_seq_id_2 21 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_545 _pdbx_validate_symm_contact.dist 2.10 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z+1/2 3 y,-x,z+1/2 4 -x,-y,z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 25.2236804107 40.8895635081 32.9031755382 0.378178352428 ? -0.0646389599597 ? 0.0281355829214 ? 0.192870159697 ? -0.00150411302112 ? 0.264500289519 ? 1.07921921206 ? -0.21510069906 ? 0.474555027539 ? 1.16994042627 ? 0.885983348915 ? 1.11366386145 ? 0.185835199418 ? 0.000357866682021 ? 0.206508323685 ? -0.22645661713 ? -0.245746912828 ? -0.045376026456 ? -0.130265700104 ? 0.210260632248 ? 0.0512960309836 ? 2 'X-RAY DIFFRACTION' ? refined 8.63172743878 64.9321595195 34.651712272 0.242490882619 ? 0.0650573896695 ? 0.158028364914 ? 0.284419180301 ? 0.0375222015382 ? 0.245441657587 ? 0.668386772607 ? 0.508997227951 ? -0.35782250132 ? 0.919870882813 ? -0.740982491768 ? 1.56733295034 ? -0.0540957646317 ? -0.051286125039 ? -0.0705040056099 ? 0.00796004252246 ? -0.136286991465 ? 0.0666309902018 ? -0.120653974208 ? -0.282910935737 ? -0.507944861458 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? C ? A 101 ? ? ;(chain 'A' and resid 1 through 101) ; 2 'X-RAY DIFFRACTION' 2 B ? B 1 ? C ? B 101 ? ? ;(chain 'B' and resid 1 through 101) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A1ID5 C2 C Y N 38 A1ID5 "C1'" C N R 39 A1ID5 "C2'" C N R 40 A1ID5 "C3'" C N S 41 A1ID5 "C4'" C N R 42 A1ID5 "C5'" C N N 43 A1ID5 C1P C N N 44 A1ID5 C2P C N N 45 A1ID5 C3P C N N 46 A1ID5 C4 C Y N 47 A1ID5 C5 C Y N 48 A1ID5 C6 C Y N 49 A1ID5 C8 C Y N 50 A1ID5 N1 N Y N 51 A1ID5 N3 N Y N 52 A1ID5 N6 N N N 53 A1ID5 N7 N Y N 54 A1ID5 N9 N Y N 55 A1ID5 "O2'" O N N 56 A1ID5 "O3'" O N N 57 A1ID5 "O4'" O N N 58 A1ID5 "O5'" O N N 59 A1ID5 OP1 O N N 60 A1ID5 OP2 O N N 61 A1ID5 P P N N 62 A1ID5 H2 H N N 63 A1ID5 "H1'" H N N 64 A1ID5 "H2'" H N N 65 A1ID5 "H3'" H N N 66 A1ID5 "H4'" H N N 67 A1ID5 "H5''" H N N 68 A1ID5 "H5'" H N N 69 A1ID5 H1 H N N 70 A1ID5 H3 H N N 71 A1ID5 H4 H N N 72 A1ID5 H8 H N N 73 A1ID5 H62 H N N 74 A1ID5 H61 H N N 75 A1ID5 "HO2'" H N N 76 A1ID5 "HO3'" H N N 77 A1ID5 HOP2 H N N 78 A1ID5 OP3 O N N 79 A1ID5 HOP3 H N N 80 A1IY6 C5 C Y N 81 A1IY6 C6 C Y N 82 A1IY6 N1 N Y N 83 A1IY6 C2 C Y N 84 A1IY6 "C3'" C N S 85 A1IY6 C02 C N N 86 A1IY6 C04 C N S 87 A1IY6 C06 C N N 88 A1IY6 C07 C N N 89 A1IY6 N01 N N N 90 A1IY6 N05 N N N 91 A1IY6 O03 O N N 92 A1IY6 SE8 SE N N 93 A1IY6 "C4'" C N S 94 A1IY6 "O4'" O N N 95 A1IY6 "C5'" C N N 96 A1IY6 "C1'" C N R 97 A1IY6 C8 C Y N 98 A1IY6 C4 C Y N 99 A1IY6 "C2'" C N R 100 A1IY6 N9 N Y N 101 A1IY6 N7 N Y N 102 A1IY6 N4 N N N 103 A1IY6 N2 N N N 104 A1IY6 N3 N Y N 105 A1IY6 "O2'" O N N 106 A1IY6 "O3'" O N N 107 A1IY6 "H3'" H N N 108 A1IY6 H041 H N N 109 A1IY6 H062 H N N 110 A1IY6 H061 H N N 111 A1IY6 H012 H N N 112 A1IY6 H011 H N N 113 A1IY6 H052 H N N 114 A1IY6 H051 H N N 115 A1IY6 "H4'" H N N 116 A1IY6 "H5'" H N N 117 A1IY6 "H5''" H N N 118 A1IY6 "H1'" H N N 119 A1IY6 H8 H N N 120 A1IY6 "H2'" H N N 121 A1IY6 H22 H N N 122 A1IY6 H21 H N N 123 A1IY6 "HO2'" H N N 124 A1IY6 "HO3'" H N N 125 A1IY6 H42 H N N 126 A1IY6 H41 H N N 127 A1IY6 H71 H N N 128 A1IY6 H72 H N N 129 C OP3 O N N 130 C P P N N 131 C OP1 O N N 132 C OP2 O N N 133 C "O5'" O N N 134 C "C5'" C N N 135 C "C4'" C N R 136 C "O4'" O N N 137 C "C3'" C N S 138 C "O3'" O N N 139 C "C2'" C N R 140 C "O2'" O N N 141 C "C1'" C N R 142 C N1 N N N 143 C C2 C N N 144 C O2 O N N 145 C N3 N N N 146 C C4 C N N 147 C N4 N N N 148 C C5 C N N 149 C C6 C N N 150 C HOP3 H N N 151 C HOP2 H N N 152 C "H5'" H N N 153 C "H5''" H N N 154 C "H4'" H N N 155 C "H3'" H N N 156 C "HO3'" H N N 157 C "H2'" H N N 158 C "HO2'" H N N 159 C "H1'" H N N 160 C H41 H N N 161 C H42 H N N 162 C H5 H N N 163 C H6 H N N 164 G OP3 O N N 165 G P P N N 166 G OP1 O N N 167 G OP2 O N N 168 G "O5'" O N N 169 G "C5'" C N N 170 G "C4'" C N R 171 G "O4'" O N N 172 G "C3'" C N S 173 G "O3'" O N N 174 G "C2'" C N R 175 G "O2'" O N N 176 G "C1'" C N R 177 G N9 N Y N 178 G C8 C Y N 179 G N7 N Y N 180 G C5 C Y N 181 G C6 C N N 182 G O6 O N N 183 G N1 N N N 184 G C2 C N N 185 G N2 N N N 186 G N3 N N N 187 G C4 C Y N 188 G HOP3 H N N 189 G HOP2 H N N 190 G "H5'" H N N 191 G "H5''" H N N 192 G "H4'" H N N 193 G "H3'" H N N 194 G "HO3'" H N N 195 G "H2'" H N N 196 G "HO2'" H N N 197 G "H1'" H N N 198 G H8 H N N 199 G H1 H N N 200 G H21 H N N 201 G H22 H N N 202 GDP PB P N N 203 GDP O1B O N N 204 GDP O2B O N N 205 GDP O3B O N N 206 GDP O3A O N N 207 GDP PA P N N 208 GDP O1A O N N 209 GDP O2A O N N 210 GDP "O5'" O N N 211 GDP "C5'" C N N 212 GDP "C4'" C N R 213 GDP "O4'" O N N 214 GDP "C3'" C N S 215 GDP "O3'" O N N 216 GDP "C2'" C N R 217 GDP "O2'" O N N 218 GDP "C1'" C N R 219 GDP N9 N Y N 220 GDP C8 C Y N 221 GDP N7 N Y N 222 GDP C5 C Y N 223 GDP C6 C N N 224 GDP O6 O N N 225 GDP N1 N N N 226 GDP C2 C N N 227 GDP N2 N N N 228 GDP N3 N N N 229 GDP C4 C Y N 230 GDP HOB2 H N N 231 GDP HOB3 H N N 232 GDP HOA2 H N N 233 GDP "H5'" H N N 234 GDP "H5''" H N N 235 GDP "H4'" H N N 236 GDP "H3'" H N N 237 GDP "HO3'" H N N 238 GDP "H2'" H N N 239 GDP "HO2'" H N N 240 GDP "H1'" H N N 241 GDP H8 H N N 242 GDP HN1 H N N 243 GDP HN21 H N N 244 GDP HN22 H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 MG MG MG N N 249 U OP3 O N N 250 U P P N N 251 U OP1 O N N 252 U OP2 O N N 253 U "O5'" O N N 254 U "C5'" C N N 255 U "C4'" C N R 256 U "O4'" O N N 257 U "C3'" C N S 258 U "O3'" O N N 259 U "C2'" C N R 260 U "O2'" O N N 261 U "C1'" C N R 262 U N1 N N N 263 U C2 C N N 264 U O2 O N N 265 U N3 N N N 266 U C4 C N N 267 U O4 O N N 268 U C5 C N N 269 U C6 C N N 270 U HOP3 H N N 271 U HOP2 H N N 272 U "H5'" H N N 273 U "H5''" H N N 274 U "H4'" H N N 275 U "H3'" H N N 276 U "HO3'" H N N 277 U "H2'" H N N 278 U "HO2'" H N N 279 U "H1'" H N N 280 U H3 H N N 281 U H5 H N N 282 U H6 H N N 283 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A1ID5 "O3'" "C3'" sing N N 40 A1ID5 OP1 P doub N N 41 A1ID5 "C3'" "C4'" sing N N 42 A1ID5 "C3'" "C2'" sing N N 43 A1ID5 "C4'" "C5'" sing N N 44 A1ID5 "C4'" "O4'" sing N N 45 A1ID5 "C5'" "O5'" sing N N 46 A1ID5 "O2'" "C2'" sing N N 47 A1ID5 P "O5'" sing N N 48 A1ID5 P OP2 sing N N 49 A1ID5 "C2'" "C1'" sing N N 50 A1ID5 C3P C2P trip N N 51 A1ID5 "O4'" "C1'" sing N N 52 A1ID5 C2P C1P sing N N 53 A1ID5 "C1'" N9 sing N N 54 A1ID5 C1P N3 sing N N 55 A1ID5 N9 C4 sing Y N 56 A1ID5 N9 C8 sing Y N 57 A1ID5 N3 C4 sing Y N 58 A1ID5 N3 C2 doub Y N 59 A1ID5 C4 C5 doub Y N 60 A1ID5 C8 N7 doub Y N 61 A1ID5 C2 N1 sing Y N 62 A1ID5 C5 N7 sing Y N 63 A1ID5 C5 C6 sing Y N 64 A1ID5 N1 C6 doub Y N 65 A1ID5 C6 N6 sing N N 66 A1ID5 C2 H2 sing N N 67 A1ID5 "C1'" "H1'" sing N N 68 A1ID5 "C2'" "H2'" sing N N 69 A1ID5 "C3'" "H3'" sing N N 70 A1ID5 "C4'" "H4'" sing N N 71 A1ID5 "C5'" "H5''" sing N N 72 A1ID5 "C5'" "H5'" sing N N 73 A1ID5 C1P H1 sing N N 74 A1ID5 C1P H3 sing N N 75 A1ID5 C3P H4 sing N N 76 A1ID5 C8 H8 sing N N 77 A1ID5 N6 H62 sing N N 78 A1ID5 N6 H61 sing N N 79 A1ID5 "O2'" "HO2'" sing N N 80 A1ID5 "O3'" "HO3'" sing N N 81 A1ID5 OP2 HOP2 sing N N 82 A1ID5 P OP3 sing N N 83 A1ID5 OP3 HOP3 sing N N 84 A1IY6 N01 C02 sing N N 85 A1IY6 O03 C02 doub N N 86 A1IY6 C02 C04 sing N N 87 A1IY6 C04 C06 sing N N 88 A1IY6 C04 N05 sing N N 89 A1IY6 C06 C07 sing N N 90 A1IY6 C07 SE8 sing N N 91 A1IY6 SE8 "C5'" sing N N 92 A1IY6 "C5'" "C4'" sing N N 93 A1IY6 "C4'" "C3'" sing N N 94 A1IY6 "C4'" "O4'" sing N N 95 A1IY6 "O3'" "C3'" sing N N 96 A1IY6 "C3'" "C2'" sing N N 97 A1IY6 "O4'" "C1'" sing N N 98 A1IY6 "C2'" "C1'" sing N N 99 A1IY6 "C2'" "O2'" sing N N 100 A1IY6 "C1'" N9 sing N N 101 A1IY6 N9 C8 sing Y N 102 A1IY6 N9 C4 sing Y N 103 A1IY6 N3 C4 sing Y N 104 A1IY6 N3 C2 doub Y N 105 A1IY6 C8 N7 doub Y N 106 A1IY6 C4 C5 doub Y N 107 A1IY6 N2 C2 sing N N 108 A1IY6 C2 N1 sing Y N 109 A1IY6 N7 C5 sing Y N 110 A1IY6 C5 C6 sing Y N 111 A1IY6 N1 C6 doub Y N 112 A1IY6 C6 N4 sing N N 113 A1IY6 "C3'" "H3'" sing N N 114 A1IY6 C04 H041 sing N N 115 A1IY6 C06 H062 sing N N 116 A1IY6 C06 H061 sing N N 117 A1IY6 N01 H012 sing N N 118 A1IY6 N01 H011 sing N N 119 A1IY6 N05 H052 sing N N 120 A1IY6 N05 H051 sing N N 121 A1IY6 "C4'" "H4'" sing N N 122 A1IY6 "C5'" "H5'" sing N N 123 A1IY6 "C5'" "H5''" sing N N 124 A1IY6 "C1'" "H1'" sing N N 125 A1IY6 C8 H8 sing N N 126 A1IY6 "C2'" "H2'" sing N N 127 A1IY6 N2 H22 sing N N 128 A1IY6 N2 H21 sing N N 129 A1IY6 "O2'" "HO2'" sing N N 130 A1IY6 "O3'" "HO3'" sing N N 131 A1IY6 N4 H42 sing N N 132 A1IY6 N4 H41 sing N N 133 A1IY6 C07 H71 sing N N 134 A1IY6 C07 H72 sing N N 135 C OP3 P sing N N 136 C OP3 HOP3 sing N N 137 C P OP1 doub N N 138 C P OP2 sing N N 139 C P "O5'" sing N N 140 C OP2 HOP2 sing N N 141 C "O5'" "C5'" sing N N 142 C "C5'" "C4'" sing N N 143 C "C5'" "H5'" sing N N 144 C "C5'" "H5''" sing N N 145 C "C4'" "O4'" sing N N 146 C "C4'" "C3'" sing N N 147 C "C4'" "H4'" sing N N 148 C "O4'" "C1'" sing N N 149 C "C3'" "O3'" sing N N 150 C "C3'" "C2'" sing N N 151 C "C3'" "H3'" sing N N 152 C "O3'" "HO3'" sing N N 153 C "C2'" "O2'" sing N N 154 C "C2'" "C1'" sing N N 155 C "C2'" "H2'" sing N N 156 C "O2'" "HO2'" sing N N 157 C "C1'" N1 sing N N 158 C "C1'" "H1'" sing N N 159 C N1 C2 sing N N 160 C N1 C6 sing N N 161 C C2 O2 doub N N 162 C C2 N3 sing N N 163 C N3 C4 doub N N 164 C C4 N4 sing N N 165 C C4 C5 sing N N 166 C N4 H41 sing N N 167 C N4 H42 sing N N 168 C C5 C6 doub N N 169 C C5 H5 sing N N 170 C C6 H6 sing N N 171 G OP3 P sing N N 172 G OP3 HOP3 sing N N 173 G P OP1 doub N N 174 G P OP2 sing N N 175 G P "O5'" sing N N 176 G OP2 HOP2 sing N N 177 G "O5'" "C5'" sing N N 178 G "C5'" "C4'" sing N N 179 G "C5'" "H5'" sing N N 180 G "C5'" "H5''" sing N N 181 G "C4'" "O4'" sing N N 182 G "C4'" "C3'" sing N N 183 G "C4'" "H4'" sing N N 184 G "O4'" "C1'" sing N N 185 G "C3'" "O3'" sing N N 186 G "C3'" "C2'" sing N N 187 G "C3'" "H3'" sing N N 188 G "O3'" "HO3'" sing N N 189 G "C2'" "O2'" sing N N 190 G "C2'" "C1'" sing N N 191 G "C2'" "H2'" sing N N 192 G "O2'" "HO2'" sing N N 193 G "C1'" N9 sing N N 194 G "C1'" "H1'" sing N N 195 G N9 C8 sing Y N 196 G N9 C4 sing Y N 197 G C8 N7 doub Y N 198 G C8 H8 sing N N 199 G N7 C5 sing Y N 200 G C5 C6 sing N N 201 G C5 C4 doub Y N 202 G C6 O6 doub N N 203 G C6 N1 sing N N 204 G N1 C2 sing N N 205 G N1 H1 sing N N 206 G C2 N2 sing N N 207 G C2 N3 doub N N 208 G N2 H21 sing N N 209 G N2 H22 sing N N 210 G N3 C4 sing N N 211 GDP PB O1B doub N N 212 GDP PB O2B sing N N 213 GDP PB O3B sing N N 214 GDP PB O3A sing N N 215 GDP O2B HOB2 sing N N 216 GDP O3B HOB3 sing N N 217 GDP O3A PA sing N N 218 GDP PA O1A doub N N 219 GDP PA O2A sing N N 220 GDP PA "O5'" sing N N 221 GDP O2A HOA2 sing N N 222 GDP "O5'" "C5'" sing N N 223 GDP "C5'" "C4'" sing N N 224 GDP "C5'" "H5'" sing N N 225 GDP "C5'" "H5''" sing N N 226 GDP "C4'" "O4'" sing N N 227 GDP "C4'" "C3'" sing N N 228 GDP "C4'" "H4'" sing N N 229 GDP "O4'" "C1'" sing N N 230 GDP "C3'" "O3'" sing N N 231 GDP "C3'" "C2'" sing N N 232 GDP "C3'" "H3'" sing N N 233 GDP "O3'" "HO3'" sing N N 234 GDP "C2'" "O2'" sing N N 235 GDP "C2'" "C1'" sing N N 236 GDP "C2'" "H2'" sing N N 237 GDP "O2'" "HO2'" sing N N 238 GDP "C1'" N9 sing N N 239 GDP "C1'" "H1'" sing N N 240 GDP N9 C8 sing Y N 241 GDP N9 C4 sing Y N 242 GDP C8 N7 doub Y N 243 GDP C8 H8 sing N N 244 GDP N7 C5 sing Y N 245 GDP C5 C6 sing N N 246 GDP C5 C4 doub Y N 247 GDP C6 O6 doub N N 248 GDP C6 N1 sing N N 249 GDP N1 C2 sing N N 250 GDP N1 HN1 sing N N 251 GDP C2 N2 sing N N 252 GDP C2 N3 doub N N 253 GDP N2 HN21 sing N N 254 GDP N2 HN22 sing N N 255 GDP N3 C4 sing N N 256 HOH O H1 sing N N 257 HOH O H2 sing N N 258 U OP3 P sing N N 259 U OP3 HOP3 sing N N 260 U P OP1 doub N N 261 U P OP2 sing N N 262 U P "O5'" sing N N 263 U OP2 HOP2 sing N N 264 U "O5'" "C5'" sing N N 265 U "C5'" "C4'" sing N N 266 U "C5'" "H5'" sing N N 267 U "C5'" "H5''" sing N N 268 U "C4'" "O4'" sing N N 269 U "C4'" "C3'" sing N N 270 U "C4'" "H4'" sing N N 271 U "O4'" "C1'" sing N N 272 U "C3'" "O3'" sing N N 273 U "C3'" "C2'" sing N N 274 U "C3'" "H3'" sing N N 275 U "O3'" "HO3'" sing N N 276 U "C2'" "O2'" sing N N 277 U "C2'" "C1'" sing N N 278 U "C2'" "H2'" sing N N 279 U "O2'" "HO2'" sing N N 280 U "C1'" N1 sing N N 281 U "C1'" "H1'" sing N N 282 U N1 C2 sing N N 283 U N1 C6 sing N N 284 U C2 O2 doub N N 285 U C2 N3 sing N N 286 U N3 C4 sing N N 287 U N3 H3 sing N N 288 U C4 O4 doub N N 289 U C4 C5 sing N N 290 U C5 C6 doub N N 291 U C5 H5 sing N N 292 U C6 H6 sing N N 293 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9FN3 'double helix' 9FN3 'a-form double helix' 9FN3 tetraloop 9FN3 'bulge loop' 9FN3 'mismatched base pair' 9FN3 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 53 1_555 A C 6 1_555 -1.742 -0.074 0.423 6.430 -5.099 12.517 1 A_G53:C6_A A 53 ? A 6 ? ? 1 1 A A 54 1_555 A U 5 1_555 -1.129 -0.006 -0.153 5.422 -19.920 8.536 2 A_A54:U5_A A 54 ? A 5 ? 20 1 1 A C 55 1_555 A G 4 1_555 0.047 0.040 -0.599 14.447 -15.718 -6.505 3 A_C55:G4_A A 55 ? A 4 ? 19 1 1 A U 56 1_555 A A 3 1_555 -0.362 -0.117 -0.673 10.879 -13.092 -5.163 4 A_U56:A3_A A 56 ? A 3 ? 20 1 1 A C 57 1_555 A G 2 1_555 -0.438 0.111 -0.313 13.026 -3.811 -1.370 5 A_C57:G2_A A 57 ? A 2 ? 19 1 1 A C 58 1_555 A GDP 1 1_555 2.088 0.106 0.081 1.218 -11.454 16.967 6 A_C58:GDP1_A A 58 ? A 1 ? ? 1 1 B GDP 1 1_555 B C 58 1_555 -2.371 -0.012 0.092 2.039 -16.818 26.241 7 B_GDP1:C58_B B 1 ? B 58 ? ? 1 1 B G 2 1_555 B C 57 1_555 0.593 0.100 -0.742 -16.828 -8.246 1.605 8 B_G2:C57_B B 2 ? B 57 ? 19 1 1 B A 3 1_555 B U 56 1_555 0.179 0.227 0.145 -1.990 -0.339 -2.225 9 B_A3:U56_B B 3 ? B 56 ? 20 1 1 B G 4 1_555 B C 55 1_555 -1.256 -0.258 0.296 5.657 -18.109 5.290 10 B_G4:C55_B B 4 ? B 55 ? 19 1 1 B U 5 1_555 B A 54 1_555 0.802 -0.037 -0.053 -0.524 -17.584 11.224 11 B_U5:A54_B B 5 ? B 54 ? 20 1 1 B C 6 1_555 B G 53 1_555 0.764 0.106 0.070 6.284 -4.285 12.160 12 B_C6:G53_B B 6 ? B 53 ? 19 1 1 A G 10 1_555 A C 34 1_555 -0.317 -0.314 -0.849 -8.833 20.764 -5.690 13 A_G10:C34_A A 10 ? A 34 ? 19 1 1 A C 13 1_555 A G 33 1_555 0.472 0.029 -0.319 19.357 -13.181 4.240 14 A_C13:G33_A A 13 ? A 33 ? 19 1 1 A A 14 1_555 A U 32 1_555 0.175 -0.030 -0.565 0.634 -1.350 12.955 15 A_A14:U32_A A 14 ? A 32 ? 20 1 1 A G 15 1_555 A C 31 1_555 0.550 0.131 -1.099 -24.176 -10.941 2.573 16 A_G15:C31_A A 15 ? A 31 ? 19 1 1 A G 16 1_555 A C 29 1_555 -0.616 -0.085 0.200 2.066 -13.197 0.257 17 A_G16:C29_A A 16 ? A 29 ? 19 1 1 A G 17 1_555 A C 28 1_555 0.086 -0.036 0.213 -7.358 -14.484 2.323 18 A_G17:C28_A A 17 ? A 28 ? 19 1 1 A C 18 1_555 A G 27 1_555 -0.224 -0.177 0.142 3.216 -17.862 2.023 19 A_C18:G27_A A 18 ? A 27 ? 19 1 1 A U 19 1_555 A A 26 1_555 0.033 -0.237 0.013 -2.786 -9.709 1.271 20 A_U19:A26_A A 19 ? A 26 ? 20 1 1 A G 20 1_555 A C 25 1_555 -0.171 -0.130 0.118 -3.282 -5.920 4.245 21 A_G20:C25_A A 20 ? A 25 ? 19 1 1 A U 21 1_555 A G 24 1_555 1.269 -4.574 0.063 -10.553 -8.831 -101.194 22 A_U21:G24_A A 21 ? A 24 ? ? 6 1 A A 35 1_555 A U 12 1_555 -0.175 0.188 0.007 5.277 15.927 9.944 23 A_A35:U12_A A 35 ? A 12 ? 20 1 1 A G 36 1_555 A C 11 1_555 0.037 -0.218 -0.832 -3.489 -13.592 7.081 24 A_G36:C11_A A 36 ? A 11 ? 19 1 1 A U 37 1_555 A G 9 1_555 0.681 -3.827 -0.815 -6.058 -14.133 -115.528 25 A_U37:G9_A A 37 ? A 9 ? ? 6 1 A C 38 1_555 A G 51 1_555 -0.400 0.162 -0.149 11.857 -17.295 1.698 26 A_C38:G51_A A 38 ? A 51 ? 19 1 1 A A 39 1_555 A U 50 1_555 0.291 -0.054 -0.011 -2.288 -10.935 8.799 27 A_A39:U50_A A 39 ? A 50 ? 20 1 1 A G 40 1_555 A C 49 1_555 0.516 -0.103 -0.101 -2.799 -13.189 0.590 28 A_G40:C49_A A 40 ? A 49 ? 19 1 1 A U 41 1_555 A A 48 1_555 0.225 -0.076 -0.065 -2.168 -9.457 6.124 29 A_U41:A48_A A 41 ? A 48 ? 20 1 1 A C 42 1_555 A G 47 1_555 0.019 -0.049 -0.035 2.827 1.991 4.929 30 A_C42:G47_A A 42 ? A 47 ? 19 1 1 A G 43 1_555 A A 46 1_555 6.899 -5.314 1.232 19.482 3.336 -12.047 31 A_G43:A46_A A 43 ? A 46 ? ? ? 1 B G 10 1_555 B C 34 1_555 0.049 -0.271 -0.746 -11.304 17.709 -9.181 32 B_G10:C34_B B 10 ? B 34 ? 19 1 1 B C 13 1_555 B G 33 1_555 -0.201 0.044 -0.223 18.196 -8.003 -2.841 33 B_C13:G33_B B 13 ? B 33 ? 19 1 1 B A 14 1_555 B U 32 1_555 0.306 -0.270 -0.479 1.227 -2.636 7.088 34 B_A14:U32_B B 14 ? B 32 ? 20 1 1 B G 15 1_555 B C 31 1_555 -0.070 0.017 -1.111 -27.424 -8.295 0.211 35 B_G15:C31_B B 15 ? B 31 ? 19 1 1 B G 16 1_555 B C 29 1_555 -0.379 -0.136 0.053 -1.748 -9.475 -0.483 36 B_G16:C29_B B 16 ? B 29 ? 19 1 1 B G 17 1_555 B C 28 1_555 0.200 -0.079 -0.299 -7.720 -10.843 0.943 37 B_G17:C28_B B 17 ? B 28 ? 19 1 1 B C 18 1_555 B G 27 1_555 -0.209 -0.076 -0.274 3.294 -10.336 1.491 38 B_C18:G27_B B 18 ? B 27 ? 19 1 1 B U 19 1_555 B A 26 1_555 5.306 -1.219 -0.457 -11.309 -10.047 1.210 39 B_U19:A26_B B 19 ? B 26 ? ? ? 1 B G 20 1_555 B G 24 1_555 -6.023 -1.063 -0.436 -6.789 -4.168 -108.375 40 B_G20:G24_B B 20 ? B 24 ? 7 4 1 B A 35 1_555 B U 12 1_555 -0.757 -0.028 -0.184 12.576 5.028 7.737 41 B_A35:U12_B B 35 ? B 12 ? 20 1 1 B G 36 1_555 B C 11 1_555 0.327 0.072 -0.265 1.330 -7.398 9.491 42 B_G36:C11_B B 36 ? B 11 ? 19 1 1 B U 37 1_555 B G 9 1_555 1.099 -4.941 -0.021 -5.892 -11.778 -105.528 43 B_U37:G9_B B 37 ? B 9 ? ? 6 1 B C 38 1_555 B G 51 1_555 -0.360 0.105 -0.259 17.153 -22.927 2.822 44 B_C38:G51_B B 38 ? B 51 ? 19 1 1 B A 39 1_555 B U 50 1_555 0.025 -0.080 0.044 -5.930 -9.227 8.885 45 B_A39:U50_B B 39 ? B 50 ? 20 1 1 B G 40 1_555 B C 49 1_555 0.011 -0.149 -0.166 -9.458 -13.012 4.411 46 B_G40:C49_B B 40 ? B 49 ? 19 1 1 B U 41 1_555 B A 48 1_555 0.448 -0.139 0.041 -3.535 -8.822 4.986 47 B_U41:A48_B B 41 ? B 48 ? 20 1 1 B C 42 1_555 B G 47 1_555 0.437 -0.251 0.009 1.519 9.772 4.722 48 B_C42:G47_B B 42 ? B 47 ? 19 1 1 B G 43 1_555 B A 46 1_555 6.938 -5.475 1.114 17.456 7.333 -12.741 49 B_G43:A46_B B 43 ? B 46 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 53 1_555 A C 6 1_555 A A 54 1_555 A U 5 1_555 -0.425 -1.300 3.217 1.599 6.811 34.832 -3.073 0.918 2.898 11.237 -2.639 35.507 1 AA_G53A54:U5C6_AA A 53 ? A 6 ? A 54 ? A 5 ? 1 A A 54 1_555 A U 5 1_555 A C 55 1_555 A G 4 1_555 -0.532 -1.174 3.114 2.163 0.737 38.412 -1.868 1.061 3.059 1.119 -3.284 38.478 2 AA_A54C55:G4U5_AA A 54 ? A 5 ? A 55 ? A 4 ? 1 A C 55 1_555 A G 4 1_555 A U 56 1_555 A A 3 1_555 -0.034 -1.929 3.572 1.455 5.637 24.308 -6.182 0.522 3.046 13.148 -3.393 24.985 3 AA_C55U56:A3G4_AA A 55 ? A 4 ? A 56 ? A 3 ? 1 A U 56 1_555 A A 3 1_555 A C 57 1_555 A G 2 1_555 0.217 -1.648 3.140 -4.057 18.063 38.874 -3.791 -0.642 2.171 25.459 5.718 42.903 4 AA_U56C57:G2A3_AA A 56 ? A 3 ? A 57 ? A 2 ? 1 A C 57 1_555 A G 2 1_555 A C 58 1_555 A GDP 1 1_555 1.421 -1.940 3.673 6.250 10.925 32.153 -5.093 -1.357 3.086 18.849 -10.783 34.468 5 AA_C57C58:GDP1G2_AA A 57 ? A 2 ? A 58 ? A 1 ? 1 A C 58 1_555 A GDP 1 1_555 B GDP 1 1_555 B C 58 1_555 -0.065 -4.896 3.103 -0.118 10.000 -51.917 4.805 -0.082 3.917 -11.303 -0.134 -52.806 6 AB_C58GDP1:C58GDP1_BA A 58 ? A 1 ? B 1 ? B 58 ? 1 B GDP 1 1_555 B C 58 1_555 B G 2 1_555 B C 57 1_555 -1.035 -1.056 3.556 1.027 14.225 48.378 -2.306 1.294 3.127 16.934 -1.223 50.315 7 BB_GDP1G2:C57C58_BB B 1 ? B 58 ? B 2 ? B 57 ? 1 B G 2 1_555 B C 57 1_555 B A 3 1_555 B U 56 1_555 -0.289 -1.679 2.730 -4.386 9.130 23.559 -5.727 -0.281 1.973 21.152 10.162 25.616 8 BB_G2A3:U56C57_BB B 2 ? B 57 ? B 3 ? B 56 ? 1 B A 3 1_555 B U 56 1_555 B G 4 1_555 B C 55 1_555 1.116 -1.944 2.995 3.072 10.690 24.999 -6.291 -1.738 2.120 23.280 -6.690 27.326 9 BB_A3G4:C55U56_BB B 3 ? B 56 ? B 4 ? B 55 ? 1 B G 4 1_555 B C 55 1_555 B U 5 1_555 B A 54 1_555 0.077 -0.996 3.423 1.451 9.231 40.580 -2.396 0.048 3.134 13.101 -2.060 41.598 10 BB_G4U5:A54C55_BB B 4 ? B 55 ? B 5 ? B 54 ? 1 B U 5 1_555 B A 54 1_555 B C 6 1_555 B G 53 1_555 0.577 -1.463 3.121 -0.176 5.769 27.397 -4.267 -1.231 2.757 12.012 0.366 27.987 11 BB_U5C6:G53A54_BB B 5 ? B 54 ? B 6 ? B 53 ? 1 A G 10 1_555 A C 34 1_555 A C 13 1_555 A G 33 1_555 -4.195 0.695 2.634 -2.425 19.161 64.250 -0.018 3.728 2.859 17.603 2.228 66.792 12 AA_G10C13:G33C34_AA A 10 ? A 34 ? A 13 ? A 33 ? 1 A C 13 1_555 A G 33 1_555 A A 14 1_555 A U 32 1_555 0.497 -1.900 3.904 -3.204 9.018 30.617 -5.239 -1.539 3.164 16.577 5.890 32.043 13 AA_C13A14:U32G33_AA A 13 ? A 33 ? A 14 ? A 32 ? 1 A A 14 1_555 A U 32 1_555 A G 15 1_555 A C 31 1_555 -0.171 -1.989 3.882 7.758 15.466 36.896 -4.708 1.171 2.776 22.953 -11.514 40.624 14 AA_A14G15:C31U32_AA A 14 ? A 32 ? A 15 ? A 31 ? 1 A G 15 1_555 A C 31 1_555 A G 16 1_555 A C 29 1_555 2.591 -1.186 2.722 -11.893 9.080 39.896 -2.269 -4.404 1.624 12.776 16.734 42.502 15 AA_G15G16:C29C31_AA A 15 ? A 31 ? A 16 ? A 29 ? 1 A G 16 1_555 A C 29 1_555 A G 17 1_555 A C 28 1_555 -0.233 -1.881 3.447 -1.086 8.067 34.414 -4.280 0.224 2.950 13.403 1.804 35.335 16 AA_G16G17:C28C29_AA A 16 ? A 29 ? A 17 ? A 28 ? 1 A G 17 1_555 A C 28 1_555 A C 18 1_555 A G 27 1_555 0.869 -2.281 2.929 5.347 -0.716 26.593 -4.695 -0.596 3.100 -1.536 -11.474 27.125 17 AA_G17C18:G27C28_AA A 17 ? A 28 ? A 18 ? A 27 ? 1 A C 18 1_555 A G 27 1_555 A U 19 1_555 A A 26 1_555 -0.584 -1.489 3.243 -0.986 11.652 33.712 -3.995 0.822 2.616 19.382 1.641 35.627 18 AA_C18U19:A26G27_AA A 18 ? A 27 ? A 19 ? A 26 ? 1 A U 19 1_555 A A 26 1_555 A G 20 1_555 A C 25 1_555 0.611 -1.580 3.211 -0.113 5.727 29.243 -4.193 -1.211 2.854 11.208 0.221 29.787 19 AA_U19G20:C25A26_AA A 19 ? A 26 ? A 20 ? A 25 ? 1 A G 20 1_555 A C 25 1_555 A U 21 1_555 A G 24 1_555 -1.292 -0.990 3.115 7.486 4.154 95.083 -0.738 0.997 2.998 2.811 -5.065 95.375 20 AA_G20U21:G24C25_AA A 20 ? A 25 ? A 21 ? A 24 ? 1 A A 35 1_555 A U 12 1_555 A G 36 1_555 A C 11 1_555 -0.316 -1.915 3.616 7.945 6.058 29.399 -4.791 2.177 2.987 11.524 -15.115 31.015 21 AA_A35G36:C11U12_AA A 35 ? A 12 ? A 36 ? A 11 ? 1 A G 36 1_555 A C 11 1_555 A U 37 1_555 A G 9 1_555 -0.950 -0.907 2.973 0.462 2.366 102.237 -0.614 0.617 2.954 1.519 -0.297 102.258 22 AA_G36U37:G9C11_AA A 36 ? A 11 ? A 37 ? A 9 ? 1 A U 37 1_555 A G 9 1_555 A C 38 1_555 A G 51 1_555 2.199 -4.672 3.472 -8.304 14.770 -0.840 -8.871 -6.439 5.317 -75.997 -42.723 -16.965 23 AA_U37C38:G51G9_AA A 37 ? A 9 ? A 38 ? A 51 ? 1 A C 38 1_555 A G 51 1_555 A A 39 1_555 A U 50 1_555 0.218 -1.571 3.499 -4.019 10.673 38.392 -3.530 -0.783 2.940 15.809 5.954 39.988 24 AA_C38A39:U50G51_AA A 38 ? A 51 ? A 39 ? A 50 ? 1 A A 39 1_555 A U 50 1_555 A G 40 1_555 A C 49 1_555 -0.682 -1.494 3.176 0.573 8.370 30.141 -4.215 1.365 2.662 15.716 -1.076 31.261 25 AA_A39G40:C49U50_AA A 39 ? A 50 ? A 40 ? A 49 ? 1 A G 40 1_555 A C 49 1_555 A U 41 1_555 A A 48 1_555 0.287 -1.223 3.172 1.003 12.868 31.548 -3.943 -0.347 2.504 22.523 -1.755 34.024 26 AA_G40U41:A48C49_AA A 40 ? A 49 ? A 41 ? A 48 ? 1 A U 41 1_555 A A 48 1_555 A C 42 1_555 A G 47 1_555 -0.001 -1.421 3.179 -1.615 9.831 31.451 -4.026 -0.249 2.625 17.592 2.889 32.953 27 AA_U41C42:G47A48_AA A 41 ? A 48 ? A 42 ? A 47 ? 1 A C 42 1_555 A G 47 1_555 A G 43 1_555 A A 46 1_555 -1.743 -0.885 2.767 -5.209 10.305 55.352 -1.428 1.595 2.717 10.960 5.541 56.450 28 AA_C42G43:A46G47_AA A 42 ? A 47 ? A 43 ? A 46 ? 1 B G 10 1_555 B C 34 1_555 B C 13 1_555 B G 33 1_555 -4.436 0.329 2.648 -3.294 17.352 61.767 -0.333 4.063 2.851 16.545 3.141 64.002 29 BB_G10C13:G33C34_BB B 10 ? B 34 ? B 13 ? B 33 ? 1 B C 13 1_555 B G 33 1_555 B A 14 1_555 B U 32 1_555 0.688 -1.953 3.786 -3.400 6.510 32.917 -4.524 -1.790 3.265 11.315 5.908 33.704 30 BB_C13A14:U32G33_BB B 13 ? B 33 ? B 14 ? B 32 ? 1 B A 14 1_555 B U 32 1_555 B G 15 1_555 B C 31 1_555 -0.247 -2.338 3.981 4.813 13.565 32.066 -6.070 1.187 2.736 23.156 -8.216 35.071 31 BB_A14G15:C31U32_BB B 14 ? B 32 ? B 15 ? B 31 ? 1 B G 15 1_555 B C 31 1_555 B G 16 1_555 B C 29 1_555 2.451 -0.748 2.711 -12.400 6.616 48.123 -1.234 -3.553 1.950 7.919 14.842 50.016 32 BB_G15G16:C29C31_BB B 15 ? B 31 ? B 16 ? B 29 ? 1 B G 16 1_555 B C 29 1_555 B G 17 1_555 B C 28 1_555 -0.233 -1.811 3.386 1.803 9.345 34.137 -4.302 0.638 2.793 15.547 -3.000 35.401 33 BB_G16G17:C28C29_BB B 16 ? B 29 ? B 17 ? B 28 ? 1 B G 17 1_555 B C 28 1_555 B C 18 1_555 B G 27 1_555 0.954 -2.476 3.055 3.569 -0.631 23.934 -5.711 -1.180 3.224 -1.510 -8.544 24.203 34 BB_G17C18:G27C28_BB B 17 ? B 28 ? B 18 ? B 27 ? 1 B C 18 1_555 B G 27 1_555 B U 19 1_555 B A 26 1_555 0.288 -1.088 3.780 7.621 6.719 54.347 -1.627 0.203 3.639 7.284 -8.262 55.218 35 BB_C18U19:A26G27_BB B 18 ? B 27 ? B 19 ? B 26 ? 1 B U 19 1_555 B A 26 1_555 B G 20 1_555 B G 24 1_555 3.103 -0.491 1.821 49.959 -157.383 -53.164 0.656 1.692 -0.436 82.595 26.219 -166.703 36 BB_U19G20:G24A26_BB B 19 ? B 26 ? B 20 ? B 24 ? 1 B A 35 1_555 B U 12 1_555 B G 36 1_555 B C 11 1_555 0.048 -1.896 3.534 0.110 8.839 33.356 -4.584 -0.064 2.951 15.073 -0.188 34.476 37 BB_A35G36:C11U12_BB B 35 ? B 12 ? B 36 ? B 11 ? 1 B G 36 1_555 B C 11 1_555 B U 37 1_555 B G 9 1_555 -0.656 -0.950 3.076 -0.721 3.037 107.751 -0.625 0.397 3.060 1.880 0.446 107.782 38 BB_G36U37:G9C11_BB B 36 ? B 11 ? B 37 ? B 9 ? 1 B U 37 1_555 B G 9 1_555 B C 38 1_555 B G 51 1_555 1.889 -4.579 3.254 -6.240 7.307 -6.194 4.334 -6.449 5.721 -43.549 -37.188 -11.429 39 BB_U37C38:G51G9_BB B 37 ? B 9 ? B 38 ? B 51 ? 1 B C 38 1_555 B G 51 1_555 B A 39 1_555 B U 50 1_555 -0.006 -1.460 3.719 -6.760 14.057 35.535 -4.033 -0.871 2.913 21.784 10.476 38.706 40 BB_C38A39:U50G51_BB B 38 ? B 51 ? B 39 ? B 50 ? 1 B A 39 1_555 B U 50 1_555 B G 40 1_555 B C 49 1_555 -0.487 -1.573 3.254 1.060 10.141 31.703 -4.308 1.015 2.623 17.990 -1.881 33.262 41 BB_A39G40:C49U50_BB B 39 ? B 50 ? B 40 ? B 49 ? 1 B G 40 1_555 B C 49 1_555 B U 41 1_555 B A 48 1_555 0.000 -1.181 3.147 -2.129 9.012 32.434 -3.379 -0.318 2.725 15.738 3.719 33.696 42 BB_G40U41:A48C49_BB B 40 ? B 49 ? B 41 ? B 48 ? 1 B U 41 1_555 B A 48 1_555 B C 42 1_555 B G 47 1_555 -0.127 -1.426 3.212 -0.821 9.069 31.308 -4.002 0.095 2.707 16.376 1.483 32.574 43 BB_U41C42:G47A48_BB B 41 ? B 48 ? B 42 ? B 47 ? 1 B C 42 1_555 B G 47 1_555 B G 43 1_555 B A 46 1_555 -1.496 -1.114 2.786 -2.324 10.477 54.506 -1.705 1.494 2.605 11.316 2.510 55.473 44 BB_C42G43:A46G47_BB B 42 ? B 47 ? B 43 ? B 46 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation (DFG)' Germany ? 1 'European Research Council (ERC)' 'European Union' ? 2 # _space_group.name_H-M_alt 'P 42' _space_group.name_Hall 'P 4c' _space_group.IT_number 77 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 9FN3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.013255 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013255 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013841 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? ? ? ? ? ? ? ? ? ? ? ? SE ? ? 26.02326 7.89457 ? ? 1.54240 29.12501 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #