data_9FNB # _entry.id 9FNB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9FNB pdb_00009fnb 10.2210/pdb9fnb/pdb WWPDB D_1292139279 ? ? EMDB EMD-50587 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9FNB _pdbx_database_status.recvd_initial_deposition_date 2024-06-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'TMEM106B filaments from Biondi bodies (Biondi variant)' _pdbx_database_related.db_id EMD-50587 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 scheres@mrc-lmb.cam.ac.uk Sjors Scheres H.W. 'principal investigator/group leader' 0000-0002-0462-6540 4 mg@mrc-lmb.cam.ac.uk Michel Goedert ? 'principal investigator/group leader' 0000-0002-5214-7886 5 bghetti@iu.edu Bernardino Ghetti ? 'principal investigator/group leader' 0000-0002-1842-8019 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ghetti, B.' 1 ? 'Schweighauser, M.' 2 ? 'Jacobsen, M.H.' 3 ? 'Gray, D.' 4 ? 'Bacioglu, M.' 5 ? 'Murzin, A.G.' 6 ? 'Glazier, B.S.' 7 ? 'Vidal, R.' 8 ? 'Newell, K.L.' 9 ? 'Gao, S.' 10 ? 'Garringer, H.J.' 11 ? 'Spillantini, M.G.' 12 ? 'Scheres, S.H.W.' 13 ? 'Goedert, M.' 14 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Neuropathol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1432-0533 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 148 _citation.language ? _citation.page_first 60 _citation.page_last 60 _citation.title 'TMEM106B amyloid filaments in the Biondi bodies of ependymal cells.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s00401-024-02807-w _citation.pdbx_database_id_PubMed 39503754 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ghetti, B.' 1 0000-0002-1842-8019 primary 'Schweighauser, M.' 2 ? primary 'Jacobsen, M.H.' 3 ? primary 'Gray, D.' 4 ? primary 'Bacioglu, M.' 5 ? primary 'Murzin, A.G.' 6 ? primary 'Glazier, B.S.' 7 ? primary 'Katsinelos, T.' 8 ? primary 'Vidal, R.' 9 ? primary 'Newell, K.L.' 10 ? primary 'Gao, S.' 11 ? primary 'Garringer, H.J.' 12 ? primary 'Spillantini, M.G.' 13 ? primary 'Scheres, S.H.W.' 14 ? primary 'Goedert, M.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Transmembrane protein 106B' 15502.680 4 ? ? ? ? 2 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTV PTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCG ; _entity_poly.pdbx_seq_one_letter_code_can ;SIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTV PTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCG ; _entity_poly.pdbx_strand_id B,A,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 ASP n 1 4 VAL n 1 5 LYS n 1 6 TYR n 1 7 ILE n 1 8 GLY n 1 9 VAL n 1 10 LYS n 1 11 SER n 1 12 ALA n 1 13 TYR n 1 14 VAL n 1 15 SER n 1 16 TYR n 1 17 ASP n 1 18 VAL n 1 19 GLN n 1 20 LYS n 1 21 ARG n 1 22 THR n 1 23 ILE n 1 24 TYR n 1 25 LEU n 1 26 ASN n 1 27 ILE n 1 28 THR n 1 29 ASN n 1 30 THR n 1 31 LEU n 1 32 ASN n 1 33 ILE n 1 34 THR n 1 35 ASN n 1 36 ASN n 1 37 ASN n 1 38 TYR n 1 39 TYR n 1 40 SER n 1 41 VAL n 1 42 GLU n 1 43 VAL n 1 44 GLU n 1 45 ASN n 1 46 ILE n 1 47 THR n 1 48 ALA n 1 49 GLN n 1 50 VAL n 1 51 GLN n 1 52 PHE n 1 53 SER n 1 54 LYS n 1 55 THR n 1 56 VAL n 1 57 ILE n 1 58 GLY n 1 59 LYS n 1 60 ALA n 1 61 ARG n 1 62 LEU n 1 63 ASN n 1 64 ASN n 1 65 ILE n 1 66 THR n 1 67 ILE n 1 68 ILE n 1 69 GLY n 1 70 PRO n 1 71 LEU n 1 72 ASP n 1 73 MET n 1 74 LYS n 1 75 GLN n 1 76 ILE n 1 77 ASP n 1 78 TYR n 1 79 THR n 1 80 VAL n 1 81 PRO n 1 82 THR n 1 83 VAL n 1 84 ILE n 1 85 ALA n 1 86 GLU n 1 87 GLU n 1 88 MET n 1 89 SER n 1 90 TYR n 1 91 MET n 1 92 TYR n 1 93 ASP n 1 94 PHE n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ILE n 1 99 SER n 1 100 ILE n 1 101 LYS n 1 102 VAL n 1 103 HIS n 1 104 ASN n 1 105 ILE n 1 106 VAL n 1 107 LEU n 1 108 MET n 1 109 MET n 1 110 GLN n 1 111 VAL n 1 112 THR n 1 113 VAL n 1 114 THR n 1 115 THR n 1 116 THR n 1 117 TYR n 1 118 PHE n 1 119 GLY n 1 120 HIS n 1 121 SER n 1 122 GLU n 1 123 GLN n 1 124 ILE n 1 125 SER n 1 126 GLN n 1 127 GLU n 1 128 ARG n 1 129 TYR n 1 130 GLN n 1 131 TYR n 1 132 VAL n 1 133 ASP n 1 134 CYS n 1 135 GLY n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 135 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 120 120 SER SER B . n A 1 2 ILE 2 121 121 ILE ILE B . n A 1 3 ASP 3 122 122 ASP ASP B . n A 1 4 VAL 4 123 123 VAL VAL B . n A 1 5 LYS 5 124 124 LYS LYS B . n A 1 6 TYR 6 125 125 TYR TYR B . n A 1 7 ILE 7 126 126 ILE ILE B . n A 1 8 GLY 8 127 127 GLY GLY B . n A 1 9 VAL 9 128 128 VAL VAL B . n A 1 10 LYS 10 129 129 LYS LYS B . n A 1 11 SER 11 130 130 SER SER B . n A 1 12 ALA 12 131 131 ALA ALA B . n A 1 13 TYR 13 132 132 TYR TYR B . n A 1 14 VAL 14 133 133 VAL VAL B . n A 1 15 SER 15 134 134 SER SER B . n A 1 16 TYR 16 135 135 TYR TYR B . n A 1 17 ASP 17 136 136 ASP ASP B . n A 1 18 VAL 18 137 137 VAL VAL B . n A 1 19 GLN 19 138 138 GLN GLN B . n A 1 20 LYS 20 139 139 LYS LYS B . n A 1 21 ARG 21 140 140 ARG ARG B . n A 1 22 THR 22 141 141 THR THR B . n A 1 23 ILE 23 142 142 ILE ILE B . n A 1 24 TYR 24 143 143 TYR TYR B . n A 1 25 LEU 25 144 144 LEU LEU B . n A 1 26 ASN 26 145 145 ASN ASN B . n A 1 27 ILE 27 146 146 ILE ILE B . n A 1 28 THR 28 147 147 THR THR B . n A 1 29 ASN 29 148 148 ASN ASN B . n A 1 30 THR 30 149 149 THR THR B . n A 1 31 LEU 31 150 150 LEU LEU B . n A 1 32 ASN 32 151 151 ASN ASN B . n A 1 33 ILE 33 152 152 ILE ILE B . n A 1 34 THR 34 153 153 THR THR B . n A 1 35 ASN 35 154 154 ASN ASN B . n A 1 36 ASN 36 155 155 ASN ASN B . n A 1 37 ASN 37 156 156 ASN ASN B . n A 1 38 TYR 38 157 157 TYR TYR B . n A 1 39 TYR 39 158 158 TYR TYR B . n A 1 40 SER 40 159 159 SER SER B . n A 1 41 VAL 41 160 160 VAL VAL B . n A 1 42 GLU 42 161 161 GLU GLU B . n A 1 43 VAL 43 162 162 VAL VAL B . n A 1 44 GLU 44 163 163 GLU GLU B . n A 1 45 ASN 45 164 164 ASN ASN B . n A 1 46 ILE 46 165 165 ILE ILE B . n A 1 47 THR 47 166 166 THR THR B . n A 1 48 ALA 48 167 167 ALA ALA B . n A 1 49 GLN 49 168 168 GLN GLN B . n A 1 50 VAL 50 169 169 VAL VAL B . n A 1 51 GLN 51 170 170 GLN GLN B . n A 1 52 PHE 52 171 171 PHE PHE B . n A 1 53 SER 53 172 172 SER SER B . n A 1 54 LYS 54 173 173 LYS LYS B . n A 1 55 THR 55 174 174 THR THR B . n A 1 56 VAL 56 175 175 VAL VAL B . n A 1 57 ILE 57 176 176 ILE ILE B . n A 1 58 GLY 58 177 177 GLY GLY B . n A 1 59 LYS 59 178 178 LYS LYS B . n A 1 60 ALA 60 179 179 ALA ALA B . n A 1 61 ARG 61 180 180 ARG ARG B . n A 1 62 LEU 62 181 181 LEU LEU B . n A 1 63 ASN 63 182 182 ASN ASN B . n A 1 64 ASN 64 183 183 ASN ASN B . n A 1 65 ILE 65 184 184 ILE ILE B . n A 1 66 THR 66 185 185 THR THR B . n A 1 67 ILE 67 186 186 ILE ILE B . n A 1 68 ILE 68 187 187 ILE ILE B . n A 1 69 GLY 69 188 188 GLY GLY B . n A 1 70 PRO 70 189 189 PRO PRO B . n A 1 71 LEU 71 190 190 LEU LEU B . n A 1 72 ASP 72 191 191 ASP ASP B . n A 1 73 MET 73 192 192 MET MET B . n A 1 74 LYS 74 193 193 LYS LYS B . n A 1 75 GLN 75 194 194 GLN GLN B . n A 1 76 ILE 76 195 195 ILE ILE B . n A 1 77 ASP 77 196 196 ASP ASP B . n A 1 78 TYR 78 197 197 TYR TYR B . n A 1 79 THR 79 198 198 THR THR B . n A 1 80 VAL 80 199 199 VAL VAL B . n A 1 81 PRO 81 200 200 PRO PRO B . n A 1 82 THR 82 201 201 THR THR B . n A 1 83 VAL 83 202 202 VAL VAL B . n A 1 84 ILE 84 203 203 ILE ILE B . n A 1 85 ALA 85 204 204 ALA ALA B . n A 1 86 GLU 86 205 205 GLU GLU B . n A 1 87 GLU 87 206 206 GLU GLU B . n A 1 88 MET 88 207 207 MET MET B . n A 1 89 SER 89 208 208 SER SER B . n A 1 90 TYR 90 209 209 TYR TYR B . n A 1 91 MET 91 210 210 MET MET B . n A 1 92 TYR 92 211 211 TYR TYR B . n A 1 93 ASP 93 212 212 ASP ASP B . n A 1 94 PHE 94 213 213 PHE PHE B . n A 1 95 CYS 95 214 214 CYS CYS B . n A 1 96 THR 96 215 215 THR THR B . n A 1 97 LEU 97 216 216 LEU LEU B . n A 1 98 ILE 98 217 217 ILE ILE B . n A 1 99 SER 99 218 218 SER SER B . n A 1 100 ILE 100 219 219 ILE ILE B . n A 1 101 LYS 101 220 220 LYS LYS B . n A 1 102 VAL 102 221 221 VAL VAL B . n A 1 103 HIS 103 222 222 HIS HIS B . n A 1 104 ASN 104 223 223 ASN ASN B . n A 1 105 ILE 105 224 224 ILE ILE B . n A 1 106 VAL 106 225 225 VAL VAL B . n A 1 107 LEU 107 226 226 LEU LEU B . n A 1 108 MET 108 227 227 MET MET B . n A 1 109 MET 109 228 228 MET MET B . n A 1 110 GLN 110 229 229 GLN GLN B . n A 1 111 VAL 111 230 230 VAL VAL B . n A 1 112 THR 112 231 231 THR THR B . n A 1 113 VAL 113 232 232 VAL VAL B . n A 1 114 THR 114 233 233 THR THR B . n A 1 115 THR 115 234 234 THR THR B . n A 1 116 THR 116 235 235 THR THR B . n A 1 117 TYR 117 236 236 TYR TYR B . n A 1 118 PHE 118 237 237 PHE PHE B . n A 1 119 GLY 119 238 238 GLY GLY B . n A 1 120 HIS 120 239 239 HIS HIS B . n A 1 121 SER 121 240 240 SER SER B . n A 1 122 GLU 122 241 241 GLU GLU B . n A 1 123 GLN 123 242 242 GLN GLN B . n A 1 124 ILE 124 243 243 ILE ILE B . n A 1 125 SER 125 244 244 SER SER B . n A 1 126 GLN 126 245 245 GLN GLN B . n A 1 127 GLU 127 246 246 GLU GLU B . n A 1 128 ARG 128 247 247 ARG ARG B . n A 1 129 TYR 129 248 248 TYR TYR B . n A 1 130 GLN 130 249 249 GLN GLN B . n A 1 131 TYR 131 250 250 TYR TYR B . n A 1 132 VAL 132 251 251 VAL VAL B . n A 1 133 ASP 133 252 252 ASP ASP B . n A 1 134 CYS 134 253 253 CYS CYS B . n A 1 135 GLY 135 254 254 GLY GLY B . n B 1 1 SER 1 120 120 SER SER A . n B 1 2 ILE 2 121 121 ILE ILE A . n B 1 3 ASP 3 122 122 ASP ASP A . n B 1 4 VAL 4 123 123 VAL VAL A . n B 1 5 LYS 5 124 124 LYS LYS A . n B 1 6 TYR 6 125 125 TYR TYR A . n B 1 7 ILE 7 126 126 ILE ILE A . n B 1 8 GLY 8 127 127 GLY GLY A . n B 1 9 VAL 9 128 128 VAL VAL A . n B 1 10 LYS 10 129 129 LYS LYS A . n B 1 11 SER 11 130 130 SER SER A . n B 1 12 ALA 12 131 131 ALA ALA A . n B 1 13 TYR 13 132 132 TYR TYR A . n B 1 14 VAL 14 133 133 VAL VAL A . n B 1 15 SER 15 134 134 SER SER A . n B 1 16 TYR 16 135 135 TYR TYR A . n B 1 17 ASP 17 136 136 ASP ASP A . n B 1 18 VAL 18 137 137 VAL VAL A . n B 1 19 GLN 19 138 138 GLN GLN A . n B 1 20 LYS 20 139 139 LYS LYS A . n B 1 21 ARG 21 140 140 ARG ARG A . n B 1 22 THR 22 141 141 THR THR A . n B 1 23 ILE 23 142 142 ILE ILE A . n B 1 24 TYR 24 143 143 TYR TYR A . n B 1 25 LEU 25 144 144 LEU LEU A . n B 1 26 ASN 26 145 145 ASN ASN A . n B 1 27 ILE 27 146 146 ILE ILE A . n B 1 28 THR 28 147 147 THR THR A . n B 1 29 ASN 29 148 148 ASN ASN A . n B 1 30 THR 30 149 149 THR THR A . n B 1 31 LEU 31 150 150 LEU LEU A . n B 1 32 ASN 32 151 151 ASN ASN A . n B 1 33 ILE 33 152 152 ILE ILE A . n B 1 34 THR 34 153 153 THR THR A . n B 1 35 ASN 35 154 154 ASN ASN A . n B 1 36 ASN 36 155 155 ASN ASN A . n B 1 37 ASN 37 156 156 ASN ASN A . n B 1 38 TYR 38 157 157 TYR TYR A . n B 1 39 TYR 39 158 158 TYR TYR A . n B 1 40 SER 40 159 159 SER SER A . n B 1 41 VAL 41 160 160 VAL VAL A . n B 1 42 GLU 42 161 161 GLU GLU A . n B 1 43 VAL 43 162 162 VAL VAL A . n B 1 44 GLU 44 163 163 GLU GLU A . n B 1 45 ASN 45 164 164 ASN ASN A . n B 1 46 ILE 46 165 165 ILE ILE A . n B 1 47 THR 47 166 166 THR THR A . n B 1 48 ALA 48 167 167 ALA ALA A . n B 1 49 GLN 49 168 168 GLN GLN A . n B 1 50 VAL 50 169 169 VAL VAL A . n B 1 51 GLN 51 170 170 GLN GLN A . n B 1 52 PHE 52 171 171 PHE PHE A . n B 1 53 SER 53 172 172 SER SER A . n B 1 54 LYS 54 173 173 LYS LYS A . n B 1 55 THR 55 174 174 THR THR A . n B 1 56 VAL 56 175 175 VAL VAL A . n B 1 57 ILE 57 176 176 ILE ILE A . n B 1 58 GLY 58 177 177 GLY GLY A . n B 1 59 LYS 59 178 178 LYS LYS A . n B 1 60 ALA 60 179 179 ALA ALA A . n B 1 61 ARG 61 180 180 ARG ARG A . n B 1 62 LEU 62 181 181 LEU LEU A . n B 1 63 ASN 63 182 182 ASN ASN A . n B 1 64 ASN 64 183 183 ASN ASN A . n B 1 65 ILE 65 184 184 ILE ILE A . n B 1 66 THR 66 185 185 THR THR A . n B 1 67 ILE 67 186 186 ILE ILE A . n B 1 68 ILE 68 187 187 ILE ILE A . n B 1 69 GLY 69 188 188 GLY GLY A . n B 1 70 PRO 70 189 189 PRO PRO A . n B 1 71 LEU 71 190 190 LEU LEU A . n B 1 72 ASP 72 191 191 ASP ASP A . n B 1 73 MET 73 192 192 MET MET A . n B 1 74 LYS 74 193 193 LYS LYS A . n B 1 75 GLN 75 194 194 GLN GLN A . n B 1 76 ILE 76 195 195 ILE ILE A . n B 1 77 ASP 77 196 196 ASP ASP A . n B 1 78 TYR 78 197 197 TYR TYR A . n B 1 79 THR 79 198 198 THR THR A . n B 1 80 VAL 80 199 199 VAL VAL A . n B 1 81 PRO 81 200 200 PRO PRO A . n B 1 82 THR 82 201 201 THR THR A . n B 1 83 VAL 83 202 202 VAL VAL A . n B 1 84 ILE 84 203 203 ILE ILE A . n B 1 85 ALA 85 204 204 ALA ALA A . n B 1 86 GLU 86 205 205 GLU GLU A . n B 1 87 GLU 87 206 206 GLU GLU A . n B 1 88 MET 88 207 207 MET MET A . n B 1 89 SER 89 208 208 SER SER A . n B 1 90 TYR 90 209 209 TYR TYR A . n B 1 91 MET 91 210 210 MET MET A . n B 1 92 TYR 92 211 211 TYR TYR A . n B 1 93 ASP 93 212 212 ASP ASP A . n B 1 94 PHE 94 213 213 PHE PHE A . n B 1 95 CYS 95 214 214 CYS CYS A . n B 1 96 THR 96 215 215 THR THR A . n B 1 97 LEU 97 216 216 LEU LEU A . n B 1 98 ILE 98 217 217 ILE ILE A . n B 1 99 SER 99 218 218 SER SER A . n B 1 100 ILE 100 219 219 ILE ILE A . n B 1 101 LYS 101 220 220 LYS LYS A . n B 1 102 VAL 102 221 221 VAL VAL A . n B 1 103 HIS 103 222 222 HIS HIS A . n B 1 104 ASN 104 223 223 ASN ASN A . n B 1 105 ILE 105 224 224 ILE ILE A . n B 1 106 VAL 106 225 225 VAL VAL A . n B 1 107 LEU 107 226 226 LEU LEU A . n B 1 108 MET 108 227 227 MET MET A . n B 1 109 MET 109 228 228 MET MET A . n B 1 110 GLN 110 229 229 GLN GLN A . n B 1 111 VAL 111 230 230 VAL VAL A . n B 1 112 THR 112 231 231 THR THR A . n B 1 113 VAL 113 232 232 VAL VAL A . n B 1 114 THR 114 233 233 THR THR A . n B 1 115 THR 115 234 234 THR THR A . n B 1 116 THR 116 235 235 THR THR A . n B 1 117 TYR 117 236 236 TYR TYR A . n B 1 118 PHE 118 237 237 PHE PHE A . n B 1 119 GLY 119 238 238 GLY GLY A . n B 1 120 HIS 120 239 239 HIS HIS A . n B 1 121 SER 121 240 240 SER SER A . n B 1 122 GLU 122 241 241 GLU GLU A . n B 1 123 GLN 123 242 242 GLN GLN A . n B 1 124 ILE 124 243 243 ILE ILE A . n B 1 125 SER 125 244 244 SER SER A . n B 1 126 GLN 126 245 245 GLN GLN A . n B 1 127 GLU 127 246 246 GLU GLU A . n B 1 128 ARG 128 247 247 ARG ARG A . n B 1 129 TYR 129 248 248 TYR TYR A . n B 1 130 GLN 130 249 249 GLN GLN A . n B 1 131 TYR 131 250 250 TYR TYR A . n B 1 132 VAL 132 251 251 VAL VAL A . n B 1 133 ASP 133 252 252 ASP ASP A . n B 1 134 CYS 134 253 253 CYS CYS A . n B 1 135 GLY 135 254 254 GLY GLY A . n C 1 1 SER 1 120 120 SER SER C . n C 1 2 ILE 2 121 121 ILE ILE C . n C 1 3 ASP 3 122 122 ASP ASP C . n C 1 4 VAL 4 123 123 VAL VAL C . n C 1 5 LYS 5 124 124 LYS LYS C . n C 1 6 TYR 6 125 125 TYR TYR C . n C 1 7 ILE 7 126 126 ILE ILE C . n C 1 8 GLY 8 127 127 GLY GLY C . n C 1 9 VAL 9 128 128 VAL VAL C . n C 1 10 LYS 10 129 129 LYS LYS C . n C 1 11 SER 11 130 130 SER SER C . n C 1 12 ALA 12 131 131 ALA ALA C . n C 1 13 TYR 13 132 132 TYR TYR C . n C 1 14 VAL 14 133 133 VAL VAL C . n C 1 15 SER 15 134 134 SER SER C . n C 1 16 TYR 16 135 135 TYR TYR C . n C 1 17 ASP 17 136 136 ASP ASP C . n C 1 18 VAL 18 137 137 VAL VAL C . n C 1 19 GLN 19 138 138 GLN GLN C . n C 1 20 LYS 20 139 139 LYS LYS C . n C 1 21 ARG 21 140 140 ARG ARG C . n C 1 22 THR 22 141 141 THR THR C . n C 1 23 ILE 23 142 142 ILE ILE C . n C 1 24 TYR 24 143 143 TYR TYR C . n C 1 25 LEU 25 144 144 LEU LEU C . n C 1 26 ASN 26 145 145 ASN ASN C . n C 1 27 ILE 27 146 146 ILE ILE C . n C 1 28 THR 28 147 147 THR THR C . n C 1 29 ASN 29 148 148 ASN ASN C . n C 1 30 THR 30 149 149 THR THR C . n C 1 31 LEU 31 150 150 LEU LEU C . n C 1 32 ASN 32 151 151 ASN ASN C . n C 1 33 ILE 33 152 152 ILE ILE C . n C 1 34 THR 34 153 153 THR THR C . n C 1 35 ASN 35 154 154 ASN ASN C . n C 1 36 ASN 36 155 155 ASN ASN C . n C 1 37 ASN 37 156 156 ASN ASN C . n C 1 38 TYR 38 157 157 TYR TYR C . n C 1 39 TYR 39 158 158 TYR TYR C . n C 1 40 SER 40 159 159 SER SER C . n C 1 41 VAL 41 160 160 VAL VAL C . n C 1 42 GLU 42 161 161 GLU GLU C . n C 1 43 VAL 43 162 162 VAL VAL C . n C 1 44 GLU 44 163 163 GLU GLU C . n C 1 45 ASN 45 164 164 ASN ASN C . n C 1 46 ILE 46 165 165 ILE ILE C . n C 1 47 THR 47 166 166 THR THR C . n C 1 48 ALA 48 167 167 ALA ALA C . n C 1 49 GLN 49 168 168 GLN GLN C . n C 1 50 VAL 50 169 169 VAL VAL C . n C 1 51 GLN 51 170 170 GLN GLN C . n C 1 52 PHE 52 171 171 PHE PHE C . n C 1 53 SER 53 172 172 SER SER C . n C 1 54 LYS 54 173 173 LYS LYS C . n C 1 55 THR 55 174 174 THR THR C . n C 1 56 VAL 56 175 175 VAL VAL C . n C 1 57 ILE 57 176 176 ILE ILE C . n C 1 58 GLY 58 177 177 GLY GLY C . n C 1 59 LYS 59 178 178 LYS LYS C . n C 1 60 ALA 60 179 179 ALA ALA C . n C 1 61 ARG 61 180 180 ARG ARG C . n C 1 62 LEU 62 181 181 LEU LEU C . n C 1 63 ASN 63 182 182 ASN ASN C . n C 1 64 ASN 64 183 183 ASN ASN C . n C 1 65 ILE 65 184 184 ILE ILE C . n C 1 66 THR 66 185 185 THR THR C . n C 1 67 ILE 67 186 186 ILE ILE C . n C 1 68 ILE 68 187 187 ILE ILE C . n C 1 69 GLY 69 188 188 GLY GLY C . n C 1 70 PRO 70 189 189 PRO PRO C . n C 1 71 LEU 71 190 190 LEU LEU C . n C 1 72 ASP 72 191 191 ASP ASP C . n C 1 73 MET 73 192 192 MET MET C . n C 1 74 LYS 74 193 193 LYS LYS C . n C 1 75 GLN 75 194 194 GLN GLN C . n C 1 76 ILE 76 195 195 ILE ILE C . n C 1 77 ASP 77 196 196 ASP ASP C . n C 1 78 TYR 78 197 197 TYR TYR C . n C 1 79 THR 79 198 198 THR THR C . n C 1 80 VAL 80 199 199 VAL VAL C . n C 1 81 PRO 81 200 200 PRO PRO C . n C 1 82 THR 82 201 201 THR THR C . n C 1 83 VAL 83 202 202 VAL VAL C . n C 1 84 ILE 84 203 203 ILE ILE C . n C 1 85 ALA 85 204 204 ALA ALA C . n C 1 86 GLU 86 205 205 GLU GLU C . n C 1 87 GLU 87 206 206 GLU GLU C . n C 1 88 MET 88 207 207 MET MET C . n C 1 89 SER 89 208 208 SER SER C . n C 1 90 TYR 90 209 209 TYR TYR C . n C 1 91 MET 91 210 210 MET MET C . n C 1 92 TYR 92 211 211 TYR TYR C . n C 1 93 ASP 93 212 212 ASP ASP C . n C 1 94 PHE 94 213 213 PHE PHE C . n C 1 95 CYS 95 214 214 CYS CYS C . n C 1 96 THR 96 215 215 THR THR C . n C 1 97 LEU 97 216 216 LEU LEU C . n C 1 98 ILE 98 217 217 ILE ILE C . n C 1 99 SER 99 218 218 SER SER C . n C 1 100 ILE 100 219 219 ILE ILE C . n C 1 101 LYS 101 220 220 LYS LYS C . n C 1 102 VAL 102 221 221 VAL VAL C . n C 1 103 HIS 103 222 222 HIS HIS C . n C 1 104 ASN 104 223 223 ASN ASN C . n C 1 105 ILE 105 224 224 ILE ILE C . n C 1 106 VAL 106 225 225 VAL VAL C . n C 1 107 LEU 107 226 226 LEU LEU C . n C 1 108 MET 108 227 227 MET MET C . n C 1 109 MET 109 228 228 MET MET C . n C 1 110 GLN 110 229 229 GLN GLN C . n C 1 111 VAL 111 230 230 VAL VAL C . n C 1 112 THR 112 231 231 THR THR C . n C 1 113 VAL 113 232 232 VAL VAL C . n C 1 114 THR 114 233 233 THR THR C . n C 1 115 THR 115 234 234 THR THR C . n C 1 116 THR 116 235 235 THR THR C . n C 1 117 TYR 117 236 236 TYR TYR C . n C 1 118 PHE 118 237 237 PHE PHE C . n C 1 119 GLY 119 238 238 GLY GLY C . n C 1 120 HIS 120 239 239 HIS HIS C . n C 1 121 SER 121 240 240 SER SER C . n C 1 122 GLU 122 241 241 GLU GLU C . n C 1 123 GLN 123 242 242 GLN GLN C . n C 1 124 ILE 124 243 243 ILE ILE C . n C 1 125 SER 125 244 244 SER SER C . n C 1 126 GLN 126 245 245 GLN GLN C . n C 1 127 GLU 127 246 246 GLU GLU C . n C 1 128 ARG 128 247 247 ARG ARG C . n C 1 129 TYR 129 248 248 TYR TYR C . n C 1 130 GLN 130 249 249 GLN GLN C . n C 1 131 TYR 131 250 250 TYR TYR C . n C 1 132 VAL 132 251 251 VAL VAL C . n C 1 133 ASP 133 252 252 ASP ASP C . n C 1 134 CYS 134 253 253 CYS CYS C . n C 1 135 GLY 135 254 254 GLY GLY C . n D 1 1 SER 1 120 120 SER SER D . n D 1 2 ILE 2 121 121 ILE ILE D . n D 1 3 ASP 3 122 122 ASP ASP D . n D 1 4 VAL 4 123 123 VAL VAL D . n D 1 5 LYS 5 124 124 LYS LYS D . n D 1 6 TYR 6 125 125 TYR TYR D . n D 1 7 ILE 7 126 126 ILE ILE D . n D 1 8 GLY 8 127 127 GLY GLY D . n D 1 9 VAL 9 128 128 VAL VAL D . n D 1 10 LYS 10 129 129 LYS LYS D . n D 1 11 SER 11 130 130 SER SER D . n D 1 12 ALA 12 131 131 ALA ALA D . n D 1 13 TYR 13 132 132 TYR TYR D . n D 1 14 VAL 14 133 133 VAL VAL D . n D 1 15 SER 15 134 134 SER SER D . n D 1 16 TYR 16 135 135 TYR TYR D . n D 1 17 ASP 17 136 136 ASP ASP D . n D 1 18 VAL 18 137 137 VAL VAL D . n D 1 19 GLN 19 138 138 GLN GLN D . n D 1 20 LYS 20 139 139 LYS LYS D . n D 1 21 ARG 21 140 140 ARG ARG D . n D 1 22 THR 22 141 141 THR THR D . n D 1 23 ILE 23 142 142 ILE ILE D . n D 1 24 TYR 24 143 143 TYR TYR D . n D 1 25 LEU 25 144 144 LEU LEU D . n D 1 26 ASN 26 145 145 ASN ASN D . n D 1 27 ILE 27 146 146 ILE ILE D . n D 1 28 THR 28 147 147 THR THR D . n D 1 29 ASN 29 148 148 ASN ASN D . n D 1 30 THR 30 149 149 THR THR D . n D 1 31 LEU 31 150 150 LEU LEU D . n D 1 32 ASN 32 151 151 ASN ASN D . n D 1 33 ILE 33 152 152 ILE ILE D . n D 1 34 THR 34 153 153 THR THR D . n D 1 35 ASN 35 154 154 ASN ASN D . n D 1 36 ASN 36 155 155 ASN ASN D . n D 1 37 ASN 37 156 156 ASN ASN D . n D 1 38 TYR 38 157 157 TYR TYR D . n D 1 39 TYR 39 158 158 TYR TYR D . n D 1 40 SER 40 159 159 SER SER D . n D 1 41 VAL 41 160 160 VAL VAL D . n D 1 42 GLU 42 161 161 GLU GLU D . n D 1 43 VAL 43 162 162 VAL VAL D . n D 1 44 GLU 44 163 163 GLU GLU D . n D 1 45 ASN 45 164 164 ASN ASN D . n D 1 46 ILE 46 165 165 ILE ILE D . n D 1 47 THR 47 166 166 THR THR D . n D 1 48 ALA 48 167 167 ALA ALA D . n D 1 49 GLN 49 168 168 GLN GLN D . n D 1 50 VAL 50 169 169 VAL VAL D . n D 1 51 GLN 51 170 170 GLN GLN D . n D 1 52 PHE 52 171 171 PHE PHE D . n D 1 53 SER 53 172 172 SER SER D . n D 1 54 LYS 54 173 173 LYS LYS D . n D 1 55 THR 55 174 174 THR THR D . n D 1 56 VAL 56 175 175 VAL VAL D . n D 1 57 ILE 57 176 176 ILE ILE D . n D 1 58 GLY 58 177 177 GLY GLY D . n D 1 59 LYS 59 178 178 LYS LYS D . n D 1 60 ALA 60 179 179 ALA ALA D . n D 1 61 ARG 61 180 180 ARG ARG D . n D 1 62 LEU 62 181 181 LEU LEU D . n D 1 63 ASN 63 182 182 ASN ASN D . n D 1 64 ASN 64 183 183 ASN ASN D . n D 1 65 ILE 65 184 184 ILE ILE D . n D 1 66 THR 66 185 185 THR THR D . n D 1 67 ILE 67 186 186 ILE ILE D . n D 1 68 ILE 68 187 187 ILE ILE D . n D 1 69 GLY 69 188 188 GLY GLY D . n D 1 70 PRO 70 189 189 PRO PRO D . n D 1 71 LEU 71 190 190 LEU LEU D . n D 1 72 ASP 72 191 191 ASP ASP D . n D 1 73 MET 73 192 192 MET MET D . n D 1 74 LYS 74 193 193 LYS LYS D . n D 1 75 GLN 75 194 194 GLN GLN D . n D 1 76 ILE 76 195 195 ILE ILE D . n D 1 77 ASP 77 196 196 ASP ASP D . n D 1 78 TYR 78 197 197 TYR TYR D . n D 1 79 THR 79 198 198 THR THR D . n D 1 80 VAL 80 199 199 VAL VAL D . n D 1 81 PRO 81 200 200 PRO PRO D . n D 1 82 THR 82 201 201 THR THR D . n D 1 83 VAL 83 202 202 VAL VAL D . n D 1 84 ILE 84 203 203 ILE ILE D . n D 1 85 ALA 85 204 204 ALA ALA D . n D 1 86 GLU 86 205 205 GLU GLU D . n D 1 87 GLU 87 206 206 GLU GLU D . n D 1 88 MET 88 207 207 MET MET D . n D 1 89 SER 89 208 208 SER SER D . n D 1 90 TYR 90 209 209 TYR TYR D . n D 1 91 MET 91 210 210 MET MET D . n D 1 92 TYR 92 211 211 TYR TYR D . n D 1 93 ASP 93 212 212 ASP ASP D . n D 1 94 PHE 94 213 213 PHE PHE D . n D 1 95 CYS 95 214 214 CYS CYS D . n D 1 96 THR 96 215 215 THR THR D . n D 1 97 LEU 97 216 216 LEU LEU D . n D 1 98 ILE 98 217 217 ILE ILE D . n D 1 99 SER 99 218 218 SER SER D . n D 1 100 ILE 100 219 219 ILE ILE D . n D 1 101 LYS 101 220 220 LYS LYS D . n D 1 102 VAL 102 221 221 VAL VAL D . n D 1 103 HIS 103 222 222 HIS HIS D . n D 1 104 ASN 104 223 223 ASN ASN D . n D 1 105 ILE 105 224 224 ILE ILE D . n D 1 106 VAL 106 225 225 VAL VAL D . n D 1 107 LEU 107 226 226 LEU LEU D . n D 1 108 MET 108 227 227 MET MET D . n D 1 109 MET 109 228 228 MET MET D . n D 1 110 GLN 110 229 229 GLN GLN D . n D 1 111 VAL 111 230 230 VAL VAL D . n D 1 112 THR 112 231 231 THR THR D . n D 1 113 VAL 113 232 232 VAL VAL D . n D 1 114 THR 114 233 233 THR THR D . n D 1 115 THR 115 234 234 THR THR D . n D 1 116 THR 116 235 235 THR THR D . n D 1 117 TYR 117 236 236 TYR TYR D . n D 1 118 PHE 118 237 237 PHE PHE D . n D 1 119 GLY 119 238 238 GLY GLY D . n D 1 120 HIS 120 239 239 HIS HIS D . n D 1 121 SER 121 240 240 SER SER D . n D 1 122 GLU 122 241 241 GLU GLU D . n D 1 123 GLN 123 242 242 GLN GLN D . n D 1 124 ILE 124 243 243 ILE ILE D . n D 1 125 SER 125 244 244 SER SER D . n D 1 126 GLN 126 245 245 GLN GLN D . n D 1 127 GLU 127 246 246 GLU GLU D . n D 1 128 ARG 128 247 247 ARG ARG D . n D 1 129 TYR 129 248 248 TYR TYR D . n D 1 130 GLN 130 249 249 GLN GLN D . n D 1 131 TYR 131 250 250 TYR TYR D . n D 1 132 VAL 132 251 251 VAL VAL D . n D 1 133 ASP 133 252 252 ASP ASP D . n D 1 134 CYS 134 253 253 CYS CYS D . n D 1 135 GLY 135 254 254 GLY GLY D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG 1 301 301 NAG NAG B . F 2 NAG 1 302 302 NAG NAG B . G 2 NAG 1 303 303 NAG NAG B . H 2 NAG 1 304 304 NAG NAG B . I 2 NAG 1 301 301 NAG NAG A . J 2 NAG 1 302 302 NAG NAG A . K 2 NAG 1 303 303 NAG NAG A . L 2 NAG 1 304 304 NAG NAG A . M 2 NAG 1 301 301 NAG NAG C . N 2 NAG 1 302 302 NAG NAG C . O 2 NAG 1 303 303 NAG NAG C . P 2 NAG 1 304 304 NAG NAG C . Q 2 NAG 1 301 301 NAG NAG D . R 2 NAG 1 302 302 NAG NAG D . S 2 NAG 1 303 303 NAG NAG D . T 2 NAG 1 304 304 NAG NAG D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B NAG 304 ? O1 ? H NAG 1 O1 2 1 N 1 A NAG 304 ? O1 ? L NAG 1 O1 3 1 N 1 C NAG 304 ? O1 ? P NAG 1 O1 4 1 N 1 D NAG 304 ? O1 ? T NAG 1 O1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9FNB _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9FNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9FNB _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9FNB _struct.title 'TMEM106B filaments from Biondi bodies (Biondi variant)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9FNB _struct_keywords.text 'TMEM106B, Amyloid, Biondi bodies, Choroid plexus, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code T106B_HUMAN _struct_ref.pdbx_db_accession Q9NUM4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTV PTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCG ; _struct_ref.pdbx_align_begin 120 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9FNB B 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 2 1 9FNB A 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 3 1 9FNB C 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 4 1 9FNB D 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 95 SG ? ? ? 1_555 A CYS 134 SG ? ? B CYS 214 B CYS 253 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? B CYS 95 SG ? ? ? 1_555 B CYS 134 SG ? ? A CYS 214 A CYS 253 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? C CYS 95 SG ? ? ? 1_555 C CYS 134 SG ? ? C CYS 214 C CYS 253 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf4 disulf ? ? D CYS 95 SG ? ? ? 1_555 D CYS 134 SG ? ? D CYS 214 D CYS 253 1_555 ? ? ? ? ? ? ? 2.042 ? ? covale1 covale one ? A ASN 26 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 145 B NAG 301 1_555 ? ? ? ? ? ? ? 1.496 ? N-Glycosylation covale2 covale one ? A ASN 32 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 151 B NAG 302 1_555 ? ? ? ? ? ? ? 1.533 ? N-Glycosylation covale3 covale one ? A ASN 45 ND2 ? ? ? 1_555 G NAG . C1 ? ? B ASN 164 B NAG 303 1_555 ? ? ? ? ? ? ? 1.507 ? N-Glycosylation covale4 covale one ? B ASN 26 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 145 A NAG 301 1_555 ? ? ? ? ? ? ? 1.495 ? N-Glycosylation covale5 covale one ? B ASN 32 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 151 A NAG 302 1_555 ? ? ? ? ? ? ? 1.533 ? N-Glycosylation covale6 covale one ? B ASN 45 ND2 ? ? ? 1_555 K NAG . C1 ? ? A ASN 164 A NAG 303 1_555 ? ? ? ? ? ? ? 1.507 ? N-Glycosylation covale7 covale one ? C ASN 26 ND2 ? ? ? 1_555 M NAG . C1 ? ? C ASN 145 C NAG 301 1_555 ? ? ? ? ? ? ? 1.496 ? N-Glycosylation covale8 covale one ? C ASN 32 ND2 ? ? ? 1_555 N NAG . C1 ? ? C ASN 151 C NAG 302 1_555 ? ? ? ? ? ? ? 1.532 ? N-Glycosylation covale9 covale one ? C ASN 45 ND2 ? ? ? 1_555 O NAG . C1 ? ? C ASN 164 C NAG 303 1_555 ? ? ? ? ? ? ? 1.506 ? N-Glycosylation covale10 covale one ? D ASN 26 ND2 ? ? ? 1_555 Q NAG . C1 ? ? D ASN 145 D NAG 301 1_555 ? ? ? ? ? ? ? 1.495 ? N-Glycosylation covale11 covale one ? D ASN 32 ND2 ? ? ? 1_555 R NAG . C1 ? ? D ASN 151 D NAG 302 1_555 ? ? ? ? ? ? ? 1.533 ? N-Glycosylation covale12 covale one ? D ASN 45 ND2 ? ? ? 1_555 S NAG . C1 ? ? D ASN 164 D NAG 303 1_555 ? ? ? ? ? ? ? 1.507 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG E . ? ASN A 26 ? NAG B 301 ? 1_555 ASN B 145 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG F . ? ASN A 32 ? NAG B 302 ? 1_555 ASN B 151 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG G . ? ASN A 45 ? NAG B 303 ? 1_555 ASN B 164 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG I . ? ASN B 26 ? NAG A 301 ? 1_555 ASN A 145 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 NAG J . ? ASN B 32 ? NAG A 302 ? 1_555 ASN A 151 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 6 NAG K . ? ASN B 45 ? NAG A 303 ? 1_555 ASN A 164 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 7 NAG M . ? ASN C 26 ? NAG C 301 ? 1_555 ASN C 145 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 8 NAG N . ? ASN C 32 ? NAG C 302 ? 1_555 ASN C 151 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 9 NAG O . ? ASN C 45 ? NAG C 303 ? 1_555 ASN C 164 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 10 NAG Q . ? ASN D 26 ? NAG D 301 ? 1_555 ASN D 145 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 11 NAG R . ? ASN D 32 ? NAG D 302 ? 1_555 ASN D 151 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 12 NAG S . ? ASN D 45 ? NAG D 303 ? 1_555 ASN D 164 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 13 CYS A 95 ? CYS A 134 ? CYS B 214 ? 1_555 CYS B 253 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS B 95 ? CYS B 134 ? CYS A 214 ? 1_555 CYS A 253 ? 1_555 SG SG . . . None 'Disulfide bridge' 15 CYS C 95 ? CYS C 134 ? CYS C 214 ? 1_555 CYS C 253 ? 1_555 SG SG . . . None 'Disulfide bridge' 16 CYS D 95 ? CYS D 134 ? CYS D 214 ? 1_555 CYS D 253 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE B 2 ? ILE B 7 ? ILE A 121 ILE A 126 AA1 2 ILE C 2 ? ILE C 7 ? ILE C 121 ILE C 126 AA1 3 ILE A 2 ? ILE A 7 ? ILE B 121 ILE B 126 AA1 4 ILE D 2 ? ILE D 7 ? ILE D 121 ILE D 126 AA2 1 LYS B 10 ? SER B 11 ? LYS A 129 SER A 130 AA2 2 LYS C 10 ? SER C 11 ? LYS C 129 SER C 130 AA2 3 LYS A 10 ? SER A 11 ? LYS B 129 SER B 130 AA2 4 LYS D 10 ? SER D 11 ? LYS D 129 SER D 130 AA3 1 VAL B 14 ? SER B 15 ? VAL A 133 SER A 134 AA3 2 VAL C 14 ? SER C 15 ? VAL C 133 SER C 134 AA3 3 VAL A 14 ? SER A 15 ? VAL B 133 SER B 134 AA3 4 VAL D 14 ? SER D 15 ? VAL D 133 SER D 134 AA4 1 THR B 22 ? ILE B 57 ? THR A 141 ILE A 176 AA4 2 THR C 22 ? ILE C 57 ? THR C 141 ILE C 176 AA4 3 THR A 22 ? ILE A 57 ? THR B 141 ILE B 176 AA4 4 THR D 22 ? ILE D 57 ? THR D 141 ILE D 176 AA5 1 ARG B 61 ? ILE B 68 ? ARG A 180 ILE A 187 AA5 2 ARG C 61 ? ILE C 68 ? ARG C 180 ILE C 187 AA5 3 ARG A 61 ? ILE A 68 ? ARG B 180 ILE B 187 AA5 4 ARG D 61 ? ILE D 68 ? ARG D 180 ILE D 187 AA6 1 ASP B 72 ? THR B 79 ? ASP A 191 THR A 198 AA6 2 ASP C 72 ? THR C 79 ? ASP C 191 THR C 198 AA6 3 ASP A 72 ? THR A 79 ? ASP B 191 THR B 198 AA6 4 ASP D 72 ? THR D 79 ? ASP D 191 THR D 198 AA7 1 THR B 82 ? GLU B 87 ? THR A 201 GLU A 206 AA7 2 THR C 82 ? GLU C 87 ? THR C 201 GLU C 206 AA7 3 THR A 82 ? GLU A 87 ? THR B 201 GLU B 206 AA7 4 THR D 82 ? GLU D 87 ? THR D 201 GLU D 206 AA8 1 TYR B 90 ? VAL B 111 ? TYR A 209 VAL A 230 AA8 2 TYR C 90 ? VAL C 111 ? TYR C 209 VAL C 230 AA8 3 TYR A 90 ? VAL A 111 ? TYR B 209 VAL B 230 AA8 4 TYR D 90 ? VAL D 111 ? TYR D 209 VAL D 230 AA9 1 THR B 114 ? ASP B 133 ? THR A 233 ASP A 252 AA9 2 THR C 114 ? ASP C 133 ? THR C 233 ASP C 252 AA9 3 THR A 114 ? ASP A 133 ? THR B 233 ASP B 252 AA9 4 THR D 114 ? ASP D 133 ? THR D 233 ASP D 252 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE B 7 ? N ILE A 126 O TYR C 6 ? O TYR C 125 AA1 2 3 O ILE C 7 ? O ILE C 126 N TYR A 6 ? N TYR B 125 AA1 3 4 N ILE A 7 ? N ILE B 126 O TYR D 6 ? O TYR D 125 AA2 1 2 N SER B 11 ? N SER A 130 O LYS C 10 ? O LYS C 129 AA2 2 3 O SER C 11 ? O SER C 130 N LYS A 10 ? N LYS B 129 AA2 3 4 N SER A 11 ? N SER B 130 O LYS D 10 ? O LYS D 129 AA3 1 2 N VAL B 14 ? N VAL A 133 O SER C 15 ? O SER C 134 AA3 2 3 O VAL C 14 ? O VAL C 133 N SER A 15 ? N SER B 134 AA3 3 4 N VAL A 14 ? N VAL B 133 O SER D 15 ? O SER D 134 AA4 1 2 N ASN B 29 ? N ASN A 148 O THR C 28 ? O THR C 147 AA4 2 3 O ASN C 29 ? O ASN C 148 N THR A 28 ? N THR B 147 AA4 3 4 N ASN A 29 ? N ASN B 148 O THR D 28 ? O THR D 147 AA5 1 2 N LEU B 62 ? N LEU A 181 O ARG C 61 ? O ARG C 180 AA5 2 3 O LEU C 62 ? O LEU C 181 N ARG A 61 ? N ARG B 180 AA5 3 4 N LEU A 62 ? N LEU B 181 O ARG D 61 ? O ARG D 180 AA6 1 2 N MET B 73 ? N MET A 192 O ASP C 72 ? O ASP C 191 AA6 2 3 O MET C 73 ? O MET C 192 N ASP A 72 ? N ASP B 191 AA6 3 4 N MET A 73 ? N MET B 192 O ASP D 72 ? O ASP D 191 AA7 1 2 N ILE B 84 ? N ILE A 203 O ALA C 85 ? O ALA C 204 AA7 2 3 O ILE C 84 ? O ILE C 203 N ALA A 85 ? N ALA B 204 AA7 3 4 N ILE A 84 ? N ILE B 203 O ALA D 85 ? O ALA D 204 AA8 1 2 N ASN B 104 ? N ASN A 223 O ILE C 105 ? O ILE C 224 AA8 2 3 O ASN C 104 ? O ASN C 223 N ILE A 105 ? N ILE B 224 AA8 3 4 N ASN A 104 ? N ASN B 223 O ILE D 105 ? O ILE D 224 AA9 1 2 N ARG B 128 ? N ARG A 247 O TYR C 129 ? O TYR C 248 AA9 2 3 O ARG C 128 ? O ARG C 247 N TYR A 129 ? N TYR B 248 AA9 3 4 N ARG A 128 ? N ARG B 247 O TYR D 129 ? O TYR D 248 # _pdbx_entry_details.entry_id 9FNB _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 122 ? ? 67.17 60.85 2 1 VAL B 128 ? ? -120.55 -63.23 3 1 ASN B 145 ? ? 71.71 51.36 4 1 LYS B 178 ? ? -102.68 61.50 5 1 CYS B 214 ? ? 61.44 63.46 6 1 ASN B 223 ? ? -94.42 -68.36 7 1 ASP A 122 ? ? 67.14 60.82 8 1 VAL A 128 ? ? -120.57 -63.19 9 1 ASN A 145 ? ? 71.73 51.40 10 1 LYS A 178 ? ? -102.66 61.48 11 1 CYS A 214 ? ? 61.47 63.43 12 1 ASN A 223 ? ? -94.42 -68.39 13 1 ASP C 122 ? ? 67.17 60.88 14 1 VAL C 128 ? ? -120.57 -63.27 15 1 ASN C 145 ? ? 71.72 51.38 16 1 LYS C 178 ? ? -102.69 61.52 17 1 CYS C 214 ? ? 61.49 63.42 18 1 ASN C 223 ? ? -94.37 -68.35 19 1 ASP D 122 ? ? 67.19 60.90 20 1 VAL D 128 ? ? -120.51 -63.23 21 1 ASN D 145 ? ? 71.69 51.37 22 1 LYS D 178 ? ? -102.69 61.53 23 1 CYS D 214 ? ? 61.38 63.48 24 1 ASN D 223 ? ? -94.39 -68.39 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9FNB _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7QVC _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7QVC _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9FNB _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.64 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 38763 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'TMEM106B Filaments' _em_entity_assembly.details ;TMEM106B filaments extracted from Biondi bodies of Alzheimer's disease ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9FNB _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1700 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 96000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 9FNB _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9FNB _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _em_admin.current_status REL _em_admin.deposition_date 2024-06-10 _em_admin.deposition_site PDBE _em_admin.entry_id 9FNB _em_admin.last_update 2024-11-20 _em_admin.map_release_date 2024-11-20 _em_admin.title 'TMEM106B filaments from Biondi bodies (Biondi variant)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ Brain _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue 'Choroid plexus' _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.46 _em_helical_entity.axial_rise_per_subunit 4.88 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 30.0 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 685561 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4.1 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? RELION 4.1 'MODEL REFINEMENT' ? 13 ? 1 ? Servalcat ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UP_A025-1013 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_U105184291 2 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' P30-AG010133 3 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' P30-AG072976 4 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01-NS110437 5 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7QVC _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9FNB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #