HEADER OXIDOREDUCTASE 13-JUN-24 9FPL TITLE NI,FE-CODH : EU(II)-REDUCED PH 8.0 + CO2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.7.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS Z-2901; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: COOS2, COOSII, CHY_0085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS C-CLUSTER, 4FE-4S, IRON, IRON-SULFUR, METAL-BINDING, NICKEL, NICKEL KEYWDS 2 REDOX, OXIDOREDUCTASE, CARBON DIOXIDE, CARBON MONOXIDE, CODH EXPDTA X-RAY DIFFRACTION AUTHOR Y.BASAK,J.-H.JEOUNG,H.DOBBEK REVDAT 1 30-JUL-25 9FPL 0 JRNL AUTH Y.BASAK,J.-H.JEOUNG,H.DOBBEK JRNL TITL NI,FE-CODH : TI(III)-REDUCED PH 8.0 JRNL REF NATURE CATALYSIS 2025 JRNL DOI 10.1038/S41929-025-01388-5 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 127561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1900 - 3.1500 0.99 9422 149 0.1238 0.1422 REMARK 3 2 3.1500 - 2.5000 0.98 9250 147 0.1238 0.1383 REMARK 3 3 2.5000 - 2.1900 0.98 9176 147 0.1137 0.1373 REMARK 3 4 2.1900 - 1.9900 0.97 9109 144 0.1202 0.1545 REMARK 3 5 1.9900 - 1.8400 0.97 9033 145 0.1235 0.1429 REMARK 3 6 1.8400 - 1.7400 0.96 8984 143 0.1358 0.1568 REMARK 3 7 1.7400 - 1.6500 0.96 8975 143 0.1527 0.1809 REMARK 3 8 1.6500 - 1.5800 0.96 8919 141 0.1687 0.1822 REMARK 3 9 1.5800 - 1.5200 0.95 8876 142 0.1909 0.2069 REMARK 3 10 1.5200 - 1.4600 0.95 8881 142 0.2120 0.2287 REMARK 3 11 1.4600 - 1.4200 0.95 8810 140 0.2464 0.2528 REMARK 3 12 1.4200 - 1.3800 0.94 8783 139 0.2666 0.2698 REMARK 3 13 1.3800 - 1.3400 0.94 8698 139 0.2881 0.2950 REMARK 3 14 1.3400 - 1.3100 0.93 8646 138 0.3108 0.3466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5147 REMARK 3 ANGLE : 1.243 7066 REMARK 3 CHIRALITY : 1.454 836 REMARK 3 PLANARITY : 0.011 925 REMARK 3 DIHEDRAL : 13.155 1938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 66.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, PEG 2000MME 14-18%, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.59900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.59900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.28667 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.30329 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X1420 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X 3 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS X 526 CB CYS X 526 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 55.48 -93.48 REMARK 500 ASP X 63 -158.78 -104.53 REMARK 500 ALA X 112 79.82 -154.78 REMARK 500 LYS X 157 -167.56 -162.05 REMARK 500 PRO X 160 -174.78 -69.05 REMARK 500 CYS X 201 -124.43 -116.41 REMARK 500 ALA X 203 44.00 -148.47 REMARK 500 THR X 242 -153.87 -153.23 REMARK 500 ASN X 245 171.99 96.53 REMARK 500 HIS X 261 -39.32 -138.69 REMARK 500 HIS X 261 -37.36 -130.64 REMARK 500 CYS X 294 -153.75 61.85 REMARK 500 CYS X 294 -145.56 59.57 REMARK 500 SER X 312 -120.38 46.83 REMARK 500 ASP X 330 -101.90 -101.96 REMARK 500 ASP X 330 -70.29 -116.04 REMARK 500 GLN X 332 128.53 82.31 REMARK 500 ASP X 454 -7.50 82.05 REMARK 500 MET X 560 -56.36 -134.92 REMARK 500 SER X 598 -66.92 -141.88 REMARK 500 SER X 598 -65.97 -141.88 REMARK 500 TYR X 607 149.84 -174.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X1859 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH X1860 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH X1861 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH X1862 DISTANCE = 7.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X1002 S1 107.0 REMARK 620 3 FES X1002 S2 117.5 104.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X1002 S1 118.6 REMARK 620 3 FES X1002 S2 113.5 104.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X1001 S1 117.7 REMARK 620 3 SF4 X1001 S2 110.5 103.7 REMARK 620 4 SF4 X1001 S4 112.0 104.7 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X1001 S1 121.3 REMARK 620 3 SF4 X1001 S3 102.2 104.1 REMARK 620 4 SF4 X1001 S4 121.6 101.8 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X1001 S2 109.3 REMARK 620 3 SF4 X1001 S3 117.6 103.7 REMARK 620 4 SF4 X1001 S4 114.0 105.6 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X1001 S1 118.5 REMARK 620 3 SF4 X1001 S2 116.8 101.6 REMARK 620 4 SF4 X1001 S3 110.9 104.3 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 103.5 REMARK 620 3 F3S X1003 S2 94.7 103.5 REMARK 620 4 CO2 X1006 O1 82.8 113.2 142.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 99.8 REMARK 620 3 F3S X1003 S2 65.4 99.0 REMARK 620 4 CO2 X1006 O1 45.8 123.4 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S X1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 F3S X1003 S2 117.7 REMARK 620 3 F3S X1003 S3 114.9 99.6 REMARK 620 4 F3S X1003 S4 97.2 120.4 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S X1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 F3S X1003 S1 125.5 REMARK 620 3 F3S X1003 S3 107.1 104.3 REMARK 620 4 F3S X1003 S4 106.7 101.1 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S X1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 F3S X1003 S1 110.1 REMARK 620 3 F3S X1003 S2 110.7 110.4 REMARK 620 4 F3S X1003 S3 118.3 105.8 101.0 REMARK 620 5 CYS X 476 SG 20.4 100.8 130.9 105.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI X1005 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 526 SG REMARK 620 2 F3S X1003 S1 90.6 REMARK 620 3 F3S X1003 S4 168.0 101.3 REMARK 620 4 CO2 X1006 O2 86.8 160.7 82.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI X1005 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 F3S X1003 S1 REMARK 620 2 F3S X1003 S4 92.7 REMARK 620 3 CO2 X1006 O2 161.9 77.1 REMARK 620 4 HOH X1253 O 132.0 90.7 63.9 REMARK 620 N 1 2 3 DBREF 9FPL X 1 636 UNP Q9F8A8 COOS2_CARHZ 1 636 SEQADV 9FPL ARG X 3 UNP Q9F8A8 LYS 3 CONFLICT SEQRES 1 X 636 MET ALA ARG GLN ASN LEU LYS SER THR ASP ARG ALA VAL SEQRES 2 X 636 GLN GLN MET LEU ASP LYS ALA LYS ARG GLU GLY ILE GLN SEQRES 3 X 636 THR VAL TRP ASP ARG TYR GLU ALA MET LYS PRO GLN CYS SEQRES 4 X 636 GLY PHE GLY GLU THR GLY LEU CYS CYS ARG HIS CYS LEU SEQRES 5 X 636 GLN GLY PRO CYS ARG ILE ASN PRO PHE GLY ASP GLU PRO SEQRES 6 X 636 LYS VAL GLY ILE CYS GLY ALA THR ALA GLU VAL ILE VAL SEQRES 7 X 636 ALA ARG GLY LEU ASP ARG SER ILE ALA ALA GLY ALA ALA SEQRES 8 X 636 GLY HIS SER GLY HIS ALA LYS HIS LEU ALA HIS THR LEU SEQRES 9 X 636 LYS LYS ALA VAL GLN GLY LYS ALA ALA SER TYR MET ILE SEQRES 10 X 636 LYS ASP ARG THR LYS LEU HIS SER ILE ALA LYS ARG LEU SEQRES 11 X 636 GLY ILE PRO THR GLU GLY GLN LYS ASP GLU ASP ILE ALA SEQRES 12 X 636 LEU GLU VAL ALA LYS ALA ALA LEU ALA ASP PHE HIS GLU SEQRES 13 X 636 LYS ASP THR PRO VAL LEU TRP VAL THR THR VAL LEU PRO SEQRES 14 X 636 PRO SER ARG VAL LYS VAL LEU SER ALA HIS GLY LEU ILE SEQRES 15 X 636 PRO ALA GLY ILE ASP HIS GLU ILE ALA GLU ILE MET HIS SEQRES 16 X 636 ARG THR SER MET GLY CYS ASP ALA ASP ALA GLN ASN LEU SEQRES 17 X 636 LEU LEU GLY GLY LEU ARG CYS SER LEU ALA ASP LEU ALA SEQRES 18 X 636 GLY CYS TYR MET GLY THR ASP LEU ALA ASP ILE LEU PHE SEQRES 19 X 636 GLY THR PRO ALA PRO VAL VAL THR GLU SER ASN LEU GLY SEQRES 20 X 636 VAL LEU LYS ALA ASP ALA VAL ASN VAL ALA VAL HIS GLY SEQRES 21 X 636 HIS ASN PRO VAL LEU SER ASP ILE ILE VAL SER VAL SER SEQRES 22 X 636 LYS GLU MET GLU ASN GLU ALA ARG ALA ALA GLY ALA THR SEQRES 23 X 636 GLY ILE ASN VAL VAL GLY ILE CYS CYS THR GLY ASN GLU SEQRES 24 X 636 VAL LEU MET ARG HIS GLY ILE PRO ALA CYS THR HIS SER SEQRES 25 X 636 VAL SER GLN GLU MET ALA MET ILE THR GLY ALA LEU ASP SEQRES 26 X 636 ALA MET ILE LEU ASP TYR GLN CYS ILE GLN PRO SER VAL SEQRES 27 X 636 ALA THR ILE ALA GLU CYS THR GLY THR THR VAL ILE THR SEQRES 28 X 636 THR MET GLU MET SER LYS ILE THR GLY ALA THR HIS VAL SEQRES 29 X 636 ASN PHE ALA GLU GLU ALA ALA VAL GLU ASN ALA LYS GLN SEQRES 30 X 636 ILE LEU ARG LEU ALA ILE ASP THR PHE LYS ARG ARG LYS SEQRES 31 X 636 GLY LYS PRO VAL GLU ILE PRO ASN ILE LYS THR LYS VAL SEQRES 32 X 636 VAL ALA GLY PHE SER THR GLU ALA ILE ILE ASN ALA LEU SEQRES 33 X 636 SER LYS LEU ASN ALA ASN ASP PRO LEU LYS PRO LEU ILE SEQRES 34 X 636 ASP ASN VAL VAL ASN GLY ASN ILE ARG GLY VAL CYS LEU SEQRES 35 X 636 PHE ALA GLY CYS ASN ASN VAL LYS VAL PRO GLN ASP GLN SEQRES 36 X 636 ASN PHE THR THR ILE ALA ARG LYS LEU LEU LYS GLN ASN SEQRES 37 X 636 VAL LEU VAL VAL ALA THR GLY CYS GLY ALA GLY ALA LEU SEQRES 38 X 636 MET ARG HIS GLY PHE MET ASP PRO ALA ASN VAL ASP GLU SEQRES 39 X 636 LEU CYS GLY ASP GLY LEU LYS ALA VAL LEU THR ALA ILE SEQRES 40 X 636 GLY GLU ALA ASN GLY LEU GLY GLY PRO LEU PRO PRO VAL SEQRES 41 X 636 LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ALA VAL SEQRES 42 X 636 ALA LEU VAL ALA ALA LEU ALA ASN ARG LEU GLY VAL ASP SEQRES 43 X 636 LEU ASP ARG LEU PRO VAL VAL ALA SER ALA ALA GLU ALA SEQRES 44 X 636 MET HIS GLU LYS ALA VAL ALA ILE GLY THR TRP ALA VAL SEQRES 45 X 636 THR ILE GLY LEU PRO THR HIS ILE GLY VAL LEU PRO PRO SEQRES 46 X 636 ILE THR GLY SER LEU PRO VAL THR GLN ILE LEU THR SER SEQRES 47 X 636 SER VAL LYS ASP ILE THR GLY GLY TYR PHE ILE VAL GLU SEQRES 48 X 636 LEU ASP PRO GLU THR ALA ALA ASP LYS LEU LEU ALA ALA SEQRES 49 X 636 ILE ASN GLU ARG ARG ALA GLY LEU GLY LEU PRO TRP HET SF4 X1001 8 HET FES X1002 4 HET F3S X1003 7 HET FE X1004 2 HET NI X1005 2 HET CO2 X1006 3 HET CMO X1007 2 HET TRS X1008 20 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM FE FE (III) ION HETNAM NI NICKEL (II) ION HETNAM CO2 CARBON DIOXIDE HETNAM CMO CARBON MONOXIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 F3S FE3 S4 FORMUL 5 FE FE 3+ FORMUL 6 NI NI 2+ FORMUL 7 CO2 C O2 FORMUL 8 CMO C O FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 HOH *762(H2 O) HELIX 1 AA1 ARG X 3 LYS X 7 5 5 HELIX 2 AA2 ASP X 10 GLY X 24 1 15 HELIX 3 AA3 THR X 27 LYS X 36 1 10 HELIX 4 AA4 CYS X 39 GLY X 45 1 7 HELIX 5 AA5 THR X 73 GLN X 109 1 37 HELIX 6 AA6 ASP X 119 GLY X 131 1 13 HELIX 7 AA7 LYS X 138 ASP X 153 1 16 HELIX 8 AA8 VAL X 161 THR X 166 1 6 HELIX 9 AA9 PRO X 169 HIS X 179 1 11 HELIX 10 AB1 GLY X 185 THR X 197 1 13 HELIX 11 AB2 ASP X 204 GLY X 235 1 32 HELIX 12 AB3 ASN X 245 LEU X 249 5 5 HELIX 13 AB4 ASN X 262 MET X 276 1 15 HELIX 14 AB5 MET X 276 ALA X 283 1 8 HELIX 15 AB6 CYS X 294 GLY X 305 1 12 HELIX 16 AB7 HIS X 311 VAL X 313 5 3 HELIX 17 AB8 SER X 314 THR X 321 1 8 HELIX 18 AB9 SER X 337 GLY X 346 1 10 HELIX 19 AC1 ALA X 367 GLU X 369 5 3 HELIX 20 AC2 ALA X 370 ARG X 389 1 20 HELIX 21 AC3 SER X 408 LYS X 418 1 11 HELIX 22 AC4 PRO X 424 ASN X 434 1 11 HELIX 23 AC5 ASP X 454 GLN X 467 1 14 HELIX 24 AC6 GLY X 475 HIS X 484 1 10 HELIX 25 AC7 ASP X 488 ALA X 490 5 3 HELIX 26 AC8 ASN X 491 CYS X 496 1 6 HELIX 27 AC9 GLY X 497 ASN X 511 1 15 HELIX 28 AD1 ASP X 528 GLY X 544 1 17 HELIX 29 AD2 ASP X 546 LEU X 550 5 5 HELIX 30 AD3 HIS X 561 GLY X 575 1 15 HELIX 31 AD4 SER X 589 SER X 598 1 10 HELIX 32 AD5 VAL X 600 GLY X 605 1 6 HELIX 33 AD6 ASP X 613 LEU X 632 1 20 SHEET 1 AA1 2 CYS X 47 CYS X 48 0 SHEET 2 AA1 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 AA2 2 VAL X 240 SER X 244 0 SHEET 2 AA2 2 THR X 401 ALA X 405 -1 O VAL X 403 N THR X 242 SHEET 1 AA3 6 ALA X 308 THR X 310 0 SHEET 2 AA3 6 ILE X 288 ILE X 293 1 N GLY X 292 O CYS X 309 SHEET 3 AA3 6 VAL X 254 HIS X 259 1 N VAL X 254 O ASN X 289 SHEET 4 AA3 6 LEU X 324 LEU X 329 1 O ILE X 328 N ALA X 257 SHEET 5 AA3 6 THR X 348 THR X 351 1 O ILE X 350 N LEU X 329 SHEET 6 AA3 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 AA4 6 VAL X 520 GLY X 524 0 SHEET 2 AA4 6 LEU X 470 THR X 474 1 N ALA X 473 O MET X 523 SHEET 3 AA4 6 VAL X 440 PHE X 443 1 N PHE X 443 O VAL X 472 SHEET 4 AA4 6 VAL X 552 ALA X 556 1 O SER X 555 N LEU X 442 SHEET 5 AA4 6 PRO X 577 ILE X 580 1 O HIS X 579 N ALA X 554 SHEET 6 AA4 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK SG BCYS X 294 S2 F3S X1003 1555 1555 2.05 LINK SG CYS X 39 FE2 FES X1002 1555 1555 2.27 LINK SG CYS X 47 FE1 FES X1002 1555 1555 2.26 LINK SG CYS X 48 FE3 SF4 X1001 1555 1555 2.30 LINK SG CYS X 51 FE2 SF4 X1001 1555 1555 2.26 LINK SG CYS X 56 FE1 SF4 X1001 1555 1555 2.32 LINK SG CYS X 70 FE4 SF4 X1001 1555 1555 2.32 LINK NE2AHIS X 261 FE A FE X1004 1555 1555 2.21 LINK NE2BHIS X 261 FE B FE X1004 1555 1555 2.26 LINK SG ACYS X 295 FE A FE X1004 1555 1555 2.28 LINK SG BCYS X 295 FE B FE X1004 1555 1555 2.26 LINK SG CYS X 333 FE4 F3S X1003 1555 1555 2.20 LINK SG CYS X 446 FE3 F3S X1003 1555 1555 2.36 LINK SG ACYS X 476 FE1 F3S X1003 1555 1555 2.35 LINK SG BCYS X 476 FE1 F3S X1003 1555 1555 2.18 LINK SG ACYS X 526 NI A NI X1005 1555 1555 2.17 LINK S2 F3S X1003 FE A FE X1004 1555 1555 2.35 LINK S2 F3S X1003 FE B FE X1004 1555 1555 2.57 LINK S1 F3S X1003 NI A NI X1005 1555 1555 2.28 LINK S1 F3S X1003 NI B NI X1005 1555 1555 2.28 LINK S4 F3S X1003 NI A NI X1005 1555 1555 2.15 LINK S4 F3S X1003 NI B NI X1005 1555 1555 2.45 LINK FE A FE X1004 O1 CO2 X1006 1555 1555 1.97 LINK FE B FE X1004 O1 CO2 X1006 1555 1555 2.74 LINK NI A NI X1005 O2 CO2 X1006 1555 1555 2.65 LINK NI B NI X1005 O2 CO2 X1006 1555 1555 2.64 LINK NI B NI X1005 O BHOH X1253 1555 1555 2.46 CISPEP 1 LYS X 36 PRO X 37 0 -4.20 CISPEP 2 GLY X 54 PRO X 55 0 6.27 CISPEP 3 GLU X 64 PRO X 65 0 3.38 CISPEP 4 GLU X 64 PRO X 65 0 3.90 CRYST1 112.538 75.198 71.311 90.00 111.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008886 0.000000 0.003518 0.00000 SCALE2 0.000000 0.013298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015082 0.00000 CONECT 65110130 CONECT 75010129 CONECT 76010123 CONECT 81110122 CONECT 87810121 CONECT 111610124 CONECT 409410140 CONECT 409510141 CONECT 468810137 CONECT 470810140 CONECT 470910141 CONECT 532310135 CONECT 712110134 CONECT 762710133 CONECT 762810133 CONECT 836210142 CONECT10121 878101261012710128 CONECT10122 811101251012710128 CONECT10123 760101251012610128 CONECT10124 1116101251012610127 CONECT10125101221012310124 CONECT10126101211012310124 CONECT10127101211012210124 CONECT10128101211012210123 CONECT10129 7501013110132 CONECT10130 6511013110132 CONECT101311012910130 CONECT101321012910130 CONECT10133 7627 76281013610137 CONECT1013310138 CONECT10134 7121101361013810139 CONECT10135 5323101371013810139 CONECT1013610133101341014210143 CONECT10137 4688101331013510140 CONECT1013710141 CONECT10138101331013410135 CONECT1013910134101351014210143 CONECT10140 4094 47081013710145 CONECT10141 4095 47091013710145 CONECT10142 8362101361013910146 CONECT1014310136101391014610324 CONECT101441014510146 CONECT10145101401014110144 CONECT10146101421014310144 CONECT1014710148 CONECT1014810147 CONECT1014910150101511015210153 CONECT1015010149101541015710158 CONECT1015110149101551015910160 CONECT1015210149101561016110162 CONECT1015310149101631016410165 CONECT101541015010166 CONECT101551015110167 CONECT101561015210168 CONECT1015710150 CONECT1015810150 CONECT1015910151 CONECT1016010151 CONECT1016110152 CONECT1016210152 CONECT1016310153 CONECT1016410153 CONECT1016510153 CONECT1016610154 CONECT1016710155 CONECT1016810156 CONECT1032410143 MASTER 421 0 8 33 16 0 0 6 5455 1 67 49 END