HEADER CYTOSOLIC PROTEIN 26-JUN-24 9FU8 TITLE STRUCTURE OF THE ASH1 DOMAIN OF DROSOPHILA MELANOGASTER SPD-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCDNA.LD24702; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPINDLE DEFECTIVE 2; COMPND 5 EC: 3.6.1.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SPD-2, ANON-73BA, BCDNA.LD24702, BCDNA:LD24702, CEP192, SOURCE 6 CEP192, CG17286-PA, D-SPD2, D-SPD2, DMEL\CG17286, DSPD-2, DSPD-2, SOURCE 7 DSPD-2, DSPD2, DSPD2, DSPD2, SPD-2, SPD-2, SPD2, SPD2, SPD2, SOURCE 8 CG17286, DMEL_CG17286; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENTROSOME, PERICENTRIOLAR MATERIAL, DROSOPHILA, CYTOSOLIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.SHEPPARD,Z.FENG,S.M.LEA,S.JOHNSON,J.W.RAFF REVDAT 1 02-APR-25 9FU8 0 JRNL AUTH L.HU,A.WAINMAN,A.ANDREEVA,M.APIZI,I.ALVAREZ-RODRIGO, JRNL AUTH 2 S.S.WONG,S.SAURYA,D.SHEPPARD,M.COTTEE,S.JOHNSON,S.M.LEA, JRNL AUTH 3 J.W.RAFF,M.VAN BREUGEL,Z.FENG JRNL TITL THE CONSERVED SPD-2/CEP192 DOMAIN ADOPTS A UNIQUE PROTEIN JRNL TITL 2 FOLD TO PROMOTE CENTROSOME SCAFFOLD ASSEMBLY. JRNL REF SCI ADV V. 11 R5744 2025 JRNL REFN ESSN 2375-2548 JRNL PMID 40106572 JRNL DOI 10.1126/SCIADV.ADR5744 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRFAM-SPARKY REMARK 3 AUTHORS : SHIN J, LEE W, LEE W. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139543. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 20 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.196 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MM NA2HPO4, 137 MM NACL, 27 REMARK 210 MM KCL, 18 MM KH2PO4, 1 UM ZNCL2, REMARK 210 1 MM DTT, 0.5 MM [U-13C; U-15N] REMARK 210 SPD-2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D CBCANH; 3D REMARK 210 HNCO; 3D HNHA; 3D HCCH-TOCSY; 3D REMARK 210 HCCCONH; 3D CCCONH; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRFAM-SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 696 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 747 -169.30 167.29 REMARK 500 1 THR A 751 33.61 -96.16 REMARK 500 1 SER A 754 -41.53 -138.02 REMARK 500 1 ILE A 756 -173.99 -58.10 REMARK 500 1 GLU A 762 -165.48 -60.77 REMARK 500 1 CYS A 771 62.30 -158.30 REMARK 500 1 CYS A 775 109.54 -50.13 REMARK 500 1 ALA A 777 75.20 -116.28 REMARK 500 1 ALA A 781 147.40 -177.63 REMARK 500 1 ASN A 792 105.38 -55.93 REMARK 500 1 GLN A 795 66.41 38.43 REMARK 500 1 PRO A 796 -171.64 -69.82 REMARK 500 2 PRO A 744 84.99 -69.79 REMARK 500 2 GLN A 747 -167.97 76.11 REMARK 500 2 LEU A 748 86.53 -66.54 REMARK 500 2 SER A 753 84.53 -69.92 REMARK 500 2 ILE A 756 -177.48 -59.69 REMARK 500 2 GLU A 762 -170.50 -59.27 REMARK 500 2 CYS A 771 65.12 -154.96 REMARK 500 2 CYS A 775 108.03 -50.01 REMARK 500 2 ALA A 790 122.00 -177.44 REMARK 500 2 HIS A 791 126.51 -175.17 REMARK 500 2 SER A 793 120.57 -173.84 REMARK 500 2 GLN A 795 67.45 -173.56 REMARK 500 2 PRO A 796 -172.73 -69.78 REMARK 500 3 LEU A 701 70.79 -115.95 REMARK 500 3 GLN A 747 -174.37 67.52 REMARK 500 3 LEU A 748 100.64 -53.69 REMARK 500 3 ASP A 752 48.03 -169.36 REMARK 500 3 ILE A 756 176.33 -57.54 REMARK 500 3 GLU A 762 178.49 -56.83 REMARK 500 3 CYS A 775 107.51 -49.14 REMARK 500 3 GLN A 795 72.89 61.90 REMARK 500 3 PRO A 796 -170.11 -69.77 REMARK 500 4 LEU A 701 73.94 -115.54 REMARK 500 4 ASN A 729 120.59 -171.05 REMARK 500 4 PRO A 744 55.88 -69.76 REMARK 500 4 GLN A 747 -159.69 179.14 REMARK 500 4 LEU A 748 77.57 -67.49 REMARK 500 4 ASP A 752 57.05 -90.90 REMARK 500 4 SER A 753 99.50 -55.40 REMARK 500 4 SER A 754 -41.79 -146.55 REMARK 500 4 THR A 757 102.50 -50.58 REMARK 500 4 GLU A 762 -167.47 -61.50 REMARK 500 4 CYS A 771 63.32 -152.75 REMARK 500 4 ALA A 777 74.41 -116.69 REMARK 500 4 GLN A 795 70.43 59.20 REMARK 500 4 PRO A 796 -170.90 -69.77 REMARK 500 5 ASN A 729 93.20 -160.65 REMARK 500 5 THR A 730 109.27 -59.50 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34925 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE ASH1 DOMAIN OF DROSOPHILA MELANOGASTER SPD-2 DBREF 9FU8 A 700 808 UNP Q9VV79 Q9VV79_DROME 697 805 SEQADV 9FU8 GLY A 696 UNP Q9VV79 EXPRESSION TAG SEQADV 9FU8 PRO A 697 UNP Q9VV79 EXPRESSION TAG SEQADV 9FU8 MET A 698 UNP Q9VV79 EXPRESSION TAG SEQADV 9FU8 GLY A 699 UNP Q9VV79 EXPRESSION TAG SEQRES 1 A 113 GLY PRO MET GLY LEU LEU PRO LEU LYS VAL THR HIS THR SEQRES 2 A 113 THR LEU CYS TRP GLY SER THR LYS LEU ARG THR ASP VAL SEQRES 3 A 113 ARG LYS SER MET GLN VAL LYS ASN THR ALA ASP LYS ARG SEQRES 4 A 113 LEU VAL ILE ARG LEU GLY ILE GLN GLY PRO GLY PHE GLN SEQRES 5 A 113 LEU VAL GLY THR ASP SER SER THR ILE THR LEU GLN ALA SEQRES 6 A 113 MET GLU CYS ARG SER VAL VAL ILE ASN PHE CYS PRO THR SEQRES 7 A 113 VAL CYS GLY ALA ALA ILE GLY ALA LEU SER PHE TYR ALA SEQRES 8 A 113 PRO PRO GLY ALA HIS ASN SER ASN GLN PRO GLY LEU GLU SEQRES 9 A 113 ILE PRO LEU TYR GLY TYR GLY GLY SER SHEET 1 AA1 2 VAL A 721 LYS A 728 0 SHEET 2 AA1 2 CYS A 763 PHE A 770 -1 O ILE A 768 N LYS A 723 SHEET 1 AA2 3 LEU A 739 ILE A 741 0 SHEET 2 AA2 3 GLY A 780 PHE A 784 -1 O SER A 783 N GLY A 740 SHEET 3 AA2 3 GLU A 799 LEU A 802 -1 O ILE A 800 N LEU A 782 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1681 SER A 808 ENDMDL MODEL 2 TER 1681 SER A 808 ENDMDL MODEL 3 TER 1681 SER A 808 ENDMDL MODEL 4 TER 1681 SER A 808 ENDMDL MODEL 5 TER 1681 SER A 808 ENDMDL MODEL 6 TER 1681 SER A 808 ENDMDL MODEL 7 TER 1681 SER A 808 ENDMDL MODEL 8 TER 1681 SER A 808 ENDMDL MODEL 9 TER 1681 SER A 808 ENDMDL MODEL 10 TER 1681 SER A 808 ENDMDL MASTER 155 0 0 0 5 0 0 6 831 1 0 9 END