HEADER STRUCTURAL PROTEIN 27-JUN-24 9FVL TITLE DIMERIC 14-3-3 ZETA IN COMPLEX WITH UNPHOSPHORYLATED MAP2C PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THREE RESIDUES ARE PRESENT AT THE N-TERMINAL AFTER TEV COMPND 7 CLEAVAGE FROM THE VECTOR. 1SER-2VAL-3ASP; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ISOFORM 3 OF MICROTUBULE-ASSOCIATED PROTEIN 2; COMPND 10 CHAIN: E, F; COMPND 11 SYNONYM: MAP-2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 14 ORGANISM_COMMON: NORWAY RAT; SOURCE 15 ORGANISM_TAXID: 10116 KEYWDS REGULATION, MICTORUBULE DYNAMICS, CYTOSKELETON, PHOSPHORYLATION, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.NARASIMHAN,S.JANSEN,L.ZIDEK REVDAT 2 30-APR-25 9FVL 1 JRNL REVDAT 1 12-FEB-25 9FVL 0 JRNL AUTH S.JANSEN,S.NARASIMHAN,P.CABRE FERNANDEZ,L.ILKOVICOVA, JRNL AUTH 2 A.KOZELEKOVA,K.KRALOVA,J.HRITZ,L.ZIDEK JRNL TITL CHARACTERIZATION OF MULTIPLE BINDING SITES ON MICROTUBULE JRNL TITL 2 ASSOCIATED PROTEIN 2C RECOGNIZED BY DIMERIC AND MONOMERIC JRNL TITL 3 14-3-3 ZETA. JRNL REF FEBS J. V. 292 1991 2025 JRNL REFN ISSN 1742-464X JRNL PMID 39877981 JRNL DOI 10.1111/FEBS.17405 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 43853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2446 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3235 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.074 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3787 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3663 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5086 ; 1.874 ; 1.859 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8452 ; 0.620 ; 1.792 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 6.416 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 24 ; 9.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 743 ;17.107 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4419 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 841 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1859 ; 3.407 ; 3.571 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1859 ; 3.406 ; 3.571 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2315 ; 4.656 ; 6.380 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2316 ; 4.655 ; 6.383 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 5.053 ; 4.140 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1929 ; 5.052 ; 4.142 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2772 ; 7.437 ; 7.393 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4536 ; 9.777 ;38.610 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4537 ; 9.776 ;38.620 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9FVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSGUI REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 48.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.97700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH(7.5), 400 MM SODIUM REMARK 280 ACETATE, 8MM CADMIUM SULFATE, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.55400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 465 MET A 4 REMARK 465 ASP A 234 REMARK 465 THR A 235 REMARK 465 GLN A 236 REMARK 465 GLY A 237 REMARK 465 ASP A 238 REMARK 465 GLU A 239 REMARK 465 ALA A 240 REMARK 465 GLU A 241 REMARK 465 ALA A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 244 REMARK 465 GLY A 245 REMARK 465 GLY A 246 REMARK 465 GLU A 247 REMARK 465 ASN A 248 REMARK 465 SER B 1 REMARK 465 VAL B 2 REMARK 465 ASP B 3 REMARK 465 SER B 210 REMARK 465 GLU B 211 REMARK 465 GLU B 212 REMARK 465 SER B 213 REMARK 465 TYR B 214 REMARK 465 ASP B 234 REMARK 465 THR B 235 REMARK 465 GLN B 236 REMARK 465 GLY B 237 REMARK 465 ASP B 238 REMARK 465 GLU B 239 REMARK 465 ALA B 240 REMARK 465 GLU B 241 REMARK 465 ALA B 242 REMARK 465 GLY B 243 REMARK 465 GLU B 244 REMARK 465 GLY B 245 REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 ASN B 248 REMARK 465 GLN E -20 REMARK 465 ILE E -19 REMARK 465 VAL E -18 REMARK 465 THR E -17 REMARK 465 LYS E -16 REMARK 465 LYS E -15 REMARK 465 ILE E -14 REMARK 465 ASP E -13 REMARK 465 LEU E -12 REMARK 465 SER E -11 REMARK 465 HIS E -10 REMARK 465 VAL E -9 REMARK 465 THR E -8 REMARK 465 LYS E -7 REMARK 465 CYS E -6 REMARK 465 GLY E -5 REMARK 465 SER E -4 REMARK 465 ARG E 3 REMARK 465 PRO E 4 REMARK 465 GLY E 5 REMARK 465 GLY E 6 REMARK 465 GLY E 7 REMARK 465 ARG E 8 REMARK 465 GLN F -12 REMARK 465 ILE F -11 REMARK 465 VAL F -10 REMARK 465 THR F -9 REMARK 465 LYS F -8 REMARK 465 LYS F -7 REMARK 465 ILE F -6 REMARK 465 ASP F -5 REMARK 465 LEU F -4 REMARK 465 SER F -3 REMARK 465 HIS F -2 REMARK 465 VAL F -1 REMARK 465 THR F 0 REMARK 465 LYS F 1 REMARK 465 CYS F 2 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 ARG F 11 REMARK 465 PRO F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 GLY F 15 REMARK 465 ARG F 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 4 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 76 CD CD A 301 1.63 REMARK 500 OE1 GLU B 76 CD CD B 302 1.67 REMARK 500 O HOH B 426 O HOH B 493 1.87 REMARK 500 OE1 GLU A 8 O HOH A 401 2.03 REMARK 500 OE2 GLU A 34 O HOH A 402 2.05 REMARK 500 OE2 GLU B 157 O HOH B 401 2.09 REMARK 500 OH TYR B 131 O ARG F 9 2.11 REMARK 500 OE2 GLU A 157 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 76 OE2 GLU B 105 2345 2.07 REMARK 500 OD2 ASP B 146 O HOH A 401 2355 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 76 CB - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 GLN B 11 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 LEU B 15 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU B 76 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS E -2 113.38 -168.90 REMARK 500 ARG E 1 125.88 -39.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 75 GLU B 76 -147.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 44 0.08 SIDE CHAIN REMARK 500 ARG A 83 0.09 SIDE CHAIN REMARK 500 ARG B 44 0.08 SIDE CHAIN REMARK 500 ARG B 94 0.09 SIDE CHAIN REMARK 500 ARG E 1 0.10 SIDE CHAIN REMARK 500 ARG F 9 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 515 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 518 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 519 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 521 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 522 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH A 523 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 524 DISTANCE = 8.80 ANGSTROMS REMARK 525 HOH A 525 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH B 509 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 510 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 511 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 512 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 513 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH B 514 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH B 515 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH B 516 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH B 517 DISTANCE = 9.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 GLU A 76 OE2 88.9 REMARK 620 3 GLN A 79 OE1 90.5 88.8 REMARK 620 4 GLU A 105 OE1 98.3 151.5 63.8 REMARK 620 5 GLU A 105 OE2 100.6 149.9 62.9 2.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE1 REMARK 620 2 GLU A 84 OE2 54.1 REMARK 620 3 GLU A 87 OE1 95.8 119.2 REMARK 620 4 GLU A 154 OE1 118.3 132.8 22.7 REMARK 620 5 GLU A 154 OE2 117.0 132.7 21.4 1.4 REMARK 620 6 HOH A 463 O 114.7 135.5 20.2 5.9 4.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 73 OE1 REMARK 620 2 GLU B 76 OE2 95.0 REMARK 620 3 GLN B 79 OE1 94.6 89.8 REMARK 620 4 GLU B 105 OE1 101.0 147.3 60.8 REMARK 620 5 GLU B 105 OE2 98.8 149.3 61.9 2.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 84 OE2 REMARK 620 2 GLU B 87 OE1 107.7 REMARK 620 3 GLU B 87 OE2 94.3 50.9 REMARK 620 4 GLU B 154 OE1 133.5 37.9 42.1 REMARK 620 5 GLU B 154 OE2 133.6 36.7 42.9 1.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9FUM RELATED DB: PDB DBREF 9FVL A 4 248 UNP P63104 1433Z_HUMAN 1 245 DBREF 9FVL B 4 248 UNP P63104 1433Z_HUMAN 1 245 DBREF 9FVL E -20 8 UNP P15146 MTAP2_RAT 333 362 DBREF 9FVL F -12 16 UNP P15146 MTAP2_RAT 333 362 SEQADV 9FVL SER A 1 UNP P63104 EXPRESSION TAG SEQADV 9FVL VAL A 2 UNP P63104 EXPRESSION TAG SEQADV 9FVL ASP A 3 UNP P63104 EXPRESSION TAG SEQADV 9FVL SER B 1 UNP P63104 EXPRESSION TAG SEQADV 9FVL VAL B 2 UNP P63104 EXPRESSION TAG SEQADV 9FVL ASP B 3 UNP P63104 EXPRESSION TAG SEQADV 9FVL E UNP P15146 SER 346 DELETION SEQADV 9FVL F UNP P15146 SER 346 DELETION SEQRES 1 A 248 SER VAL ASP MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 A 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 A 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 A 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 A 248 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL VAL SEQRES 6 A 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA GLU LYS LYS SEQRES 7 A 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 A 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 A 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 A 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 A 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 A 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 A 248 GLU ILE SER LYS LYS GLU MET GLN PRO THR HIS PRO ILE SEQRES 14 A 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 A 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 A 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 A 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 A 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 A 248 THR GLN GLY ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU SEQRES 20 A 248 ASN SEQRES 1 B 248 SER VAL ASP MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 B 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 B 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 B 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 B 248 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL VAL SEQRES 6 B 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA GLU LYS LYS SEQRES 7 B 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 B 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 B 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 B 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 B 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 B 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 B 248 GLU ILE SER LYS LYS GLU MET GLN PRO THR HIS PRO ILE SEQRES 14 B 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 B 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 B 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 B 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 B 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 B 248 THR GLN GLY ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU SEQRES 20 B 248 ASN SEQRES 1 E 29 GLN ILE VAL THR LYS LYS ILE ASP LEU SER HIS VAL THR SEQRES 2 E 29 LYS CYS GLY SER LEU LYS ASN ILE ARG HIS ARG PRO GLY SEQRES 3 E 29 GLY GLY ARG SEQRES 1 F 29 GLN ILE VAL THR LYS LYS ILE ASP LEU SER HIS VAL THR SEQRES 2 F 29 LYS CYS GLY SER LEU LYS ASN ILE ARG HIS ARG PRO GLY SEQRES 3 F 29 GLY GLY ARG HET CD A 301 1 HET CD A 302 1 HET CD A 303 1 HET CD B 301 1 HET CD B 302 1 HETNAM CD CADMIUM ION FORMUL 5 CD 5(CD 2+) FORMUL 10 HOH *245(H2 O) HELIX 1 AA1 ASP A 5 ALA A 19 1 15 HELIX 2 AA2 ARG A 21 GLN A 35 1 15 HELIX 3 AA3 SER A 40 THR A 72 1 33 HELIX 4 AA4 ALA A 75 PHE A 107 1 33 HELIX 5 AA5 PHE A 107 ALA A 112 1 6 HELIX 6 AA6 GLN A 114 VAL A 135 1 22 HELIX 7 AA7 ALA A 137 MET A 163 1 27 HELIX 8 AA8 HIS A 167 ILE A 184 1 18 HELIX 9 AA9 SER A 187 GLU A 205 1 19 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 SER A 213 THR A 232 1 20 HELIX 12 AB3 ASP B 5 ALA B 19 1 15 HELIX 13 AB4 ARG B 21 GLN B 35 1 15 HELIX 14 AB5 SER B 40 THR B 72 1 33 HELIX 15 AB6 ALA B 75 PHE B 107 1 33 HELIX 16 AB7 PHE B 107 ALA B 112 1 6 HELIX 17 AB8 GLN B 114 VAL B 135 1 22 HELIX 18 AB9 ALA B 137 MET B 163 1 27 HELIX 19 AC1 HIS B 167 ILE B 184 1 18 HELIX 20 AC2 SER B 187 ALA B 204 1 18 HELIX 21 AC3 ASP B 216 SER B 233 1 18 LINK OE1 GLU A 73 CD CD A 301 1555 1555 2.18 LINK OE2 GLU A 76 CD CD A 301 1555 1555 2.57 LINK OE1 GLN A 79 CD CD A 301 1555 1555 2.32 LINK OE1 GLU A 84 CD CD A 302 1555 2456 2.54 LINK OE2 GLU A 84 CD CD A 302 1555 2456 2.15 LINK OE1 GLU A 87 CD CD A 302 1555 2456 2.53 LINK OE1 GLU A 105 CD CD A 301 1555 2446 2.38 LINK OE2 GLU A 105 CD CD A 301 1555 2446 2.33 LINK OE1 GLU A 154 CD CD A 302 1555 1555 2.55 LINK OE2 GLU A 154 CD CD A 302 1555 1555 2.25 LINK CD CD A 302 O HOH A 463 1555 2446 2.57 LINK OE1 GLU B 73 CD CD B 302 1555 1555 2.04 LINK OE2 GLU B 76 CD CD B 302 1555 1555 2.57 LINK OE1 GLN B 79 CD CD B 302 1555 1555 2.35 LINK OE2 GLU B 84 CD CD B 301 1555 1555 1.91 LINK OE1 GLU B 87 CD CD B 301 1555 1555 2.38 LINK OE2 GLU B 87 CD CD B 301 1555 1555 2.65 LINK OE1 GLU B 105 CD CD B 302 1555 2355 2.31 LINK OE2 GLU B 105 CD CD B 302 1555 2355 2.30 LINK OE1 GLU B 154 CD CD B 301 1555 2355 2.52 LINK OE2 GLU B 154 CD CD B 301 1555 2355 1.96 CRYST1 74.310 69.108 82.619 90.00 112.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013457 0.000000 0.005461 0.00000 SCALE2 0.000000 0.014470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013062 0.00000 CONECT 542 3744 CONECT 561 3744 CONECT 587 3744 CONECT 1201 3745 CONECT 1202 3745 CONECT 2382 3748 CONECT 2401 3748 CONECT 2427 3748 CONECT 2470 3747 CONECT 2501 3747 CONECT 2502 3747 CONECT 3744 542 561 587 CONECT 3745 1201 1202 CONECT 3747 2470 2501 2502 CONECT 3748 2382 2401 2427 MASTER 525 0 5 21 0 0 0 6 3989 4 15 46 END