HEADER IMMUNE SYSTEM 01-JUL-24 9FWW TITLE HUMAN NKP30 IN COMPLEX WITH A VHH VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NATURAL CYTOTOXICITY TRIGGERING RECEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIVATING NATURAL KILLER RECEPTOR P30,NATURAL KILLER CELL COMPND 5 P30-RELATED PROTEIN,NK-P30,NKP30; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VHH; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCR3, 1C7, LY117; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS NATURAL KILLER CELLS, NKP30, VHHS, HUMANIZATION, MOLECULAR DYNAMICS, KEYWDS 2 HALLMARK, FRAMEWORK RESIDUES, ANTIGEN RECOGNITION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.MUSIL,F.FREIRE REVDAT 1 30-OCT-24 9FWW 0 JRNL AUTH M.L.FERNANDEZ-QUINTERO,E.GUARNERA,D.MUSIL,L.PEKAR, JRNL AUTH 2 C.SELLMANN,F.FREIRE,R.L.SOUSA,S.P.SANTOS,M.C.FREITAS, JRNL AUTH 3 T.M.BANDEIRAS,M.M.S.SILVA,J.R.LOEFFLER,A.B.WARD,J.HARWARDT, JRNL AUTH 4 S.ZIELONKA,A.EVERS JRNL TITL ON THE HUMANIZATION OF VHHS: PROSPECTIVE CASE STUDIES, JRNL TITL 2 EXPERIMENTAL AND COMPUTATIONAL CHARACTERIZATION OF JRNL TITL 3 STRUCTURAL DETERMINANTS FOR FUNCTIONALITY. JRNL REF PROTEIN SCI. V. 33 E5176 2024 JRNL REFN ESSN 1469-896X JRNL PMID 39422475 JRNL DOI 10.1002/PRO.5176 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (23-JAN-2024) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.7 REMARK 3 NUMBER OF REFLECTIONS : 29007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.70 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 554 REMARK 3 BIN R VALUE (WORKING SET) : 0.2629 REMARK 3 BIN FREE R VALUE : 0.2966 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51440 REMARK 3 B22 (A**2) : 2.51440 REMARK 3 B33 (A**2) : -5.02880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.147 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.139 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1962 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2677 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 702 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 353 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1962 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 254 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1704 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -45.4911 -23.0750 -8.1894 REMARK 3 T TENSOR REMARK 3 T11: -0.0062 T22: 0.0244 REMARK 3 T33: -0.1361 T12: 0.1748 REMARK 3 T13: 0.0085 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 2.5049 L22: 2.0486 REMARK 3 L33: 3.5029 L12: -1.2730 REMARK 3 L13: 1.1695 L23: 0.0120 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.0737 S13: 0.0722 REMARK 3 S21: -0.0704 S22: 0.0381 S23: -0.0855 REMARK 3 S31: 0.3035 S32: 0.4050 S33: -0.0679 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -58.7162 -9.4802 9.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: 0.0069 REMARK 3 T33: -0.0787 T12: 0.0196 REMARK 3 T13: 0.0142 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.5596 L22: 1.2521 REMARK 3 L33: 3.1397 L12: -0.5139 REMARK 3 L13: -0.6582 L23: 0.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: -0.0585 S13: -0.0157 REMARK 3 S21: 0.0496 S22: -0.0252 S23: 0.0644 REMARK 3 S31: -0.0479 S32: 0.1730 S33: -0.0362 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.844 REMARK 200 RESOLUTION RANGE LOW (A) : 77.594 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) PEG 4000, 20% (V/V) REMARK 280 ISOPROPANOL, 0.1 M SODIUM CITRATE PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 78.22850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.67850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 78.22850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 44.67850 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 78.22850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 44.67850 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 78.22850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.67850 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.22850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.67850 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 78.22850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.67850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 78.22850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 44.67850 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 78.22850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 78.22850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.67850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 325 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -55.52 71.64 REMARK 500 ALA A 91 36.90 -147.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 9FWW A 19 130 UNP O14931 NCTR3_HUMAN 19 130 DBREF 9FWW B 1 131 PDB 9FWW 9FWW 1 131 SEQRES 1 A 112 LEU TRP VAL SER GLN PRO PRO GLU ILE ARG THR LEU GLU SEQRES 2 A 112 GLY SER SER ALA PHE LEU PRO CYS SER PHE ASN ALA SER SEQRES 3 A 112 GLN GLY ARG LEU ALA ILE GLY SER VAL THR TRP PHE ARG SEQRES 4 A 112 ASP GLU VAL VAL PRO GLY LYS GLU VAL ARG ASN GLY THR SEQRES 5 A 112 PRO GLU PHE ARG GLY ARG LEU ALA PRO LEU ALA SER SER SEQRES 6 A 112 ARG PHE LEU HIS ASP HIS GLN ALA GLU LEU HIS ILE ARG SEQRES 7 A 112 ASP VAL ARG GLY HIS ASP ALA SER ILE TYR VAL CYS ARG SEQRES 8 A 112 VAL GLU VAL LEU GLY LEU GLY VAL GLY THR GLY ASN GLY SEQRES 9 A 112 THR ARG LEU VAL VAL GLU LYS GLU SEQRES 1 B 131 ASP VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 131 ALA GLY GLY SER LEU ARG LEU SER CYS ALA VAL SER GLY SEQRES 3 B 131 GLN THR TRP THR ASN TYR HIS ILE GLY TRP PHE ARG GLN SEQRES 4 B 131 ALA PRO GLY LYS ALA ARG GLU SER VAL ALA SER ILE GLU SEQRES 5 B 131 TRP GLY GLY ARG GLY THR TYR ALA THR ASP SER VAL LYS SEQRES 6 B 131 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 131 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 131 ALA VAL TYR TYR CYS ALA ALA GLN SER SER SER ARG SER SEQRES 9 B 131 PRO LEU GLU SER ASN TYR ASP TYR TRP GLY GLN GLY THR SEQRES 10 B 131 GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS HIS SEQRES 11 B 131 HIS HET NAG C 1 14 HET FUC C 2 10 HET NAG A 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 HOH *208(H2 O) HELIX 1 AA1 ALA A 81 HIS A 87 1 7 HELIX 2 AA2 ARG A 99 ALA A 103 5 5 HELIX 3 AA3 GLY B 26 THR B 28 5 3 HELIX 4 AA4 THR B 61 ARG B 67 1 7 HELIX 5 AA5 LYS B 87 THR B 91 5 5 SHEET 1 AA1 2 VAL A 21 SER A 22 0 SHEET 2 AA1 2 SER A 40 PHE A 41 -1 O SER A 40 N SER A 22 SHEET 1 AA2 4 GLU A 26 LEU A 30 0 SHEET 2 AA2 4 THR A 123 GLU A 128 1 O VAL A 126 N ILE A 27 SHEET 3 AA2 4 SER A 104 VAL A 112 -1 N SER A 104 O LEU A 125 SHEET 4 AA2 4 GLY A 51 ARG A 57 -1 N PHE A 56 O VAL A 107 SHEET 1 AA3 4 GLU A 26 LEU A 30 0 SHEET 2 AA3 4 THR A 123 GLU A 128 1 O VAL A 126 N ILE A 27 SHEET 3 AA3 4 SER A 104 VAL A 112 -1 N SER A 104 O LEU A 125 SHEET 4 AA3 4 GLY A 116 THR A 119 -1 O GLY A 118 N VAL A 110 SHEET 1 AA4 2 ALA A 35 LEU A 37 0 SHEET 2 AA4 2 LEU A 93 ILE A 95 -1 O LEU A 93 N LEU A 37 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 AA5 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA5 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA6 6 GLY B 10 GLN B 13 0 SHEET 2 AA6 6 THR B 117 SER B 122 1 O THR B 120 N GLY B 10 SHEET 3 AA6 6 ALA B 92 SER B 100 -1 N TYR B 94 O THR B 117 SHEET 4 AA6 6 THR B 30 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA6 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 AA6 6 THR B 58 TYR B 59 -1 O THR B 58 N SER B 50 SHEET 1 AA7 4 GLY B 10 GLN B 13 0 SHEET 2 AA7 4 THR B 117 SER B 122 1 O THR B 120 N GLY B 10 SHEET 3 AA7 4 ALA B 92 SER B 100 -1 N TYR B 94 O THR B 117 SHEET 4 AA7 4 TYR B 112 TRP B 113 -1 O TYR B 112 N ALA B 98 SSBOND 1 CYS A 39 CYS A 108 1555 1555 2.02 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.02 LINK ND2 ASN A 42 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 68 C1 NAG A 201 1555 1555 1.43 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.41 CRYST1 156.457 156.457 89.357 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006392 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011191 0.00000