HEADER IMMUNE SYSTEM 01-JUL-24 9FX3 TITLE STRUCTURE OF ACTIVE HUMAN CD109 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD109 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 150 KDA TGF-BETA-1-BINDING PROTEIN,C3 AND PZP-LIKE ALPHA-2- COMPND 5 MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 7,PLATELET-SPECIFIC GOV COMPND 6 ANTIGEN,P180,R150; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD109, CPAMD7; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PROTEASE INHIBITOR, PROTEASE CLEAVED, ACTIVE CONFORMATION, ALFA- KEYWDS 2 MACROGLOBULIN, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR A.V.ALMEIDA,G.R.ANDERSEN REVDAT 2 17-SEP-25 9FX3 1 JRNL REVDAT 1 19-MAR-25 9FX3 0 JRNL AUTH A.V.ALMEIDA,K.T.JENSEN,S.L.HARWOOD,M.H.JORGENSEN, JRNL AUTH 2 N.S.NIELSEN,I.B.THOGERSEN,J.J.ENGHILD,G.R.ANDERSEN JRNL TITL THREE CRYO-EM STRUCTURES OF CD109 REVEAL ITS MECHANISM OF JRNL TITL 2 PROTEASE INHIBITION. JRNL REF CELL REP V. 44 15787 2025 JRNL REFN ESSN 2211-1247 JRNL PMID 40482031 JRNL DOI 10.1016/J.CELREP.2025.115787 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, REMARK 3 PHENIX, CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 121082 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292136832. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MONOMERIC ACTIVE NON-GPI REMARK 245 BOUNDED CD109 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : C-TERMINAL GPI MOTIF (RESIDUES REMARK 245 1421-1445) WAS REMOVED REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 7306 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1700.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5990.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 307 REMARK 465 GLY A 308 REMARK 465 LEU A 309 REMARK 465 SER A 310 REMARK 465 GLU A 311 REMARK 465 TYR A 312 REMARK 465 LEU A 313 REMARK 465 ASP A 314 REMARK 465 LEU A 315 REMARK 465 THR A 399 REMARK 465 GLU A 400 REMARK 465 TYR A 401 REMARK 465 TRP A 402 REMARK 465 SER A 403 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 ASN A 406 REMARK 465 SER A 407 REMARK 465 GLY A 408 REMARK 465 ASN A 409 REMARK 465 GLN A 410 REMARK 465 LYS A 648 REMARK 465 ASP A 649 REMARK 465 TYR A 650 REMARK 465 ILE A 651 REMARK 465 ASP A 652 REMARK 465 GLY A 653 REMARK 465 VAL A 654 REMARK 465 TYR A 655 REMARK 465 ASP A 656 REMARK 465 ASN A 657 REMARK 465 ALA A 658 REMARK 465 GLU A 659 REMARK 465 TYR A 660 REMARK 465 ALA A 661 REMARK 465 GLU A 662 REMARK 465 ARG A 663 REMARK 465 GLU A 664 REMARK 465 ASN A 665 REMARK 465 LEU A 666 REMARK 465 TYR A 667 REMARK 465 PHE A 668 REMARK 465 GLN A 669 REMARK 465 GLY A 670 REMARK 465 HIS A 671 REMARK 465 ILE A 672 REMARK 465 VAL A 673 REMARK 465 ASP A 674 REMARK 465 ILE A 675 REMARK 465 HIS A 676 REMARK 465 ASP A 677 REMARK 465 PHE A 678 REMARK 465 SER A 679 REMARK 465 LEU A 680 REMARK 465 SER A 1129 REMARK 465 LYS A 1130 REMARK 465 LEU A 1131 REMARK 465 SER A 1132 REMARK 465 ASP A 1133 REMARK 465 SER A 1134 REMARK 465 TRP A 1135 REMARK 465 GLN A 1136 REMARK 465 PRO A 1137 REMARK 465 ARG A 1138 REMARK 465 ALA A 1265 REMARK 465 SER A 1266 REMARK 465 GLY A 1267 REMARK 465 SER A 1268 REMARK 465 SER A 1269 REMARK 465 ARG A 1270 REMARK 465 ARG A 1271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 280 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU A 380 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP A 545 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 872 CG - CD - NE ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 49 -169.34 -103.27 REMARK 500 PRO A 53 -176.51 -68.94 REMARK 500 GLN A 209 78.25 -100.49 REMARK 500 ASN A 211 -105.86 57.65 REMARK 500 LYS A 277 39.21 -98.65 REMARK 500 ALA A 644 59.72 -94.94 REMARK 500 ASN A 645 11.13 -145.08 REMARK 500 TYR A 967 34.44 -99.74 REMARK 500 ASN A1042 80.88 61.94 REMARK 500 LYS A1043 3.84 -61.83 REMARK 500 SER A1180 -152.53 58.04 REMARK 500 ASN A1204 45.38 -142.19 REMARK 500 ASP A1223 -169.54 -119.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 1085 ASN A 1086 -141.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50842 RELATED DB: EMDB REMARK 900 STRUCTURE OF ACTIVE HUMAN CD109 DBREF 9FX3 A 22 1271 UNP Q6YHK3 CD109_HUMAN 22 1271 SEQADV 9FX3 SER A 19 UNP Q6YHK3 EXPRESSION TAG SEQADV 9FX3 GLY A 20 UNP Q6YHK3 EXPRESSION TAG SEQADV 9FX3 SER A 21 UNP Q6YHK3 EXPRESSION TAG SEQADV 9FX3 GLU A 664 UNP Q6YHK3 PHE 664 CONFLICT SEQADV 9FX3 ASN A 665 UNP Q6YHK3 MET 665 CONFLICT SEQADV 9FX3 LEU A 666 UNP Q6YHK3 GLU 666 CONFLICT SEQADV 9FX3 TYR A 667 UNP Q6YHK3 GLU 667 CONFLICT SEQADV 9FX3 PHE A 668 UNP Q6YHK3 ASN 668 CONFLICT SEQADV 9FX3 GLN A 669 UNP Q6YHK3 GLU 669 CONFLICT SEQRES 1 A 1253 SER GLY SER VAL ALA PRO GLY PRO ARG PHE LEU VAL THR SEQRES 2 A 1253 ALA PRO GLY ILE ILE ARG PRO GLY GLY ASN VAL THR ILE SEQRES 3 A 1253 GLY VAL GLU LEU LEU GLU HIS CYS PRO SER GLN VAL THR SEQRES 4 A 1253 VAL LYS ALA GLU LEU LEU LYS THR ALA SER ASN LEU THR SEQRES 5 A 1253 VAL SER VAL LEU GLU ALA GLU GLY VAL PHE GLU LYS GLY SEQRES 6 A 1253 SER PHE LYS THR LEU THR LEU PRO SER LEU PRO LEU ASN SEQRES 7 A 1253 SER ALA ASP GLU ILE TYR GLU LEU ARG VAL THR GLY ARG SEQRES 8 A 1253 THR GLN ASP GLU ILE LEU PHE SER ASN SER THR ARG LEU SEQRES 9 A 1253 SER PHE GLU THR LYS ARG ILE SER VAL PHE ILE GLN THR SEQRES 10 A 1253 ASP LYS ALA LEU TYR LYS PRO LYS GLN GLU VAL LYS PHE SEQRES 11 A 1253 ARG ILE VAL THR LEU PHE SER ASP PHE LYS PRO TYR LYS SEQRES 12 A 1253 THR SER LEU ASN ILE LEU ILE LYS ASP PRO LYS SER ASN SEQRES 13 A 1253 LEU ILE GLN GLN TRP LEU SER GLN GLN SER ASP LEU GLY SEQRES 14 A 1253 VAL ILE SER LYS THR PHE GLN LEU SER SER HIS PRO ILE SEQRES 15 A 1253 LEU GLY ASP TRP SER ILE GLN VAL GLN VAL ASN ASP GLN SEQRES 16 A 1253 THR TYR TYR GLN SER PHE GLN VAL SER GLU TYR VAL LEU SEQRES 17 A 1253 PRO LYS PHE GLU VAL THR LEU GLN THR PRO LEU TYR CYS SEQRES 18 A 1253 SER MET ASN SER LYS HIS LEU ASN GLY THR ILE THR ALA SEQRES 19 A 1253 LYS TYR THR TYR GLY LYS PRO VAL LYS GLY ASP VAL THR SEQRES 20 A 1253 LEU THR PHE LEU PRO LEU SER PHE TRP GLY LYS LYS LYS SEQRES 21 A 1253 ASN ILE THR LYS THR PHE LYS ILE ASN GLY SER ALA ASN SEQRES 22 A 1253 PHE SER PHE ASN ASP GLU GLU MET LYS ASN VAL MET ASP SEQRES 23 A 1253 SER SER ASN GLY LEU SER GLU TYR LEU ASP LEU SER SER SEQRES 24 A 1253 PRO GLY PRO VAL GLU ILE LEU THR THR VAL THR GLU SER SEQRES 25 A 1253 VAL THR GLY ILE SER ARG ASN VAL SER THR ASN VAL PHE SEQRES 26 A 1253 PHE LYS GLN HIS ASP TYR ILE ILE GLU PHE PHE ASP TYR SEQRES 27 A 1253 THR THR VAL LEU LYS PRO SER LEU ASN PHE THR ALA THR SEQRES 28 A 1253 VAL LYS VAL THR ARG ALA ASP GLY ASN GLN LEU THR LEU SEQRES 29 A 1253 GLU GLU ARG ARG ASN ASN VAL VAL ILE THR VAL THR GLN SEQRES 30 A 1253 ARG ASN TYR THR GLU TYR TRP SER GLY SER ASN SER GLY SEQRES 31 A 1253 ASN GLN LYS MET GLU ALA VAL GLN LYS ILE ASN TYR THR SEQRES 32 A 1253 VAL PRO GLN SER GLY THR PHE LYS ILE GLU PHE PRO ILE SEQRES 33 A 1253 LEU GLU ASP SER SER GLU LEU GLN LEU LYS ALA TYR PHE SEQRES 34 A 1253 LEU GLY SER LYS SER SER MET ALA VAL HIS SER LEU PHE SEQRES 35 A 1253 LYS SER PRO SER LYS THR TYR ILE GLN LEU LYS THR ARG SEQRES 36 A 1253 ASP GLU ASN ILE LYS VAL GLY SER PRO PHE GLU LEU VAL SEQRES 37 A 1253 VAL SER GLY ASN LYS ARG LEU LYS GLU LEU SER TYR MET SEQRES 38 A 1253 VAL VAL SER ARG GLY GLN LEU VAL ALA VAL GLY LYS GLN SEQRES 39 A 1253 ASN SER THR MET PHE SER LEU THR PRO GLU ASN SER TRP SEQRES 40 A 1253 THR PRO LYS ALA CYS VAL ILE VAL TYR TYR ILE GLU ASP SEQRES 41 A 1253 ASP GLY GLU ILE ILE SER ASP VAL LEU LYS ILE PRO VAL SEQRES 42 A 1253 GLN LEU VAL PHE LYS ASN LYS ILE LYS LEU TYR TRP SER SEQRES 43 A 1253 LYS VAL LYS ALA GLU PRO SER GLU LYS VAL SER LEU ARG SEQRES 44 A 1253 ILE SER VAL THR GLN PRO ASP SER ILE VAL GLY ILE VAL SEQRES 45 A 1253 ALA VAL ASP LYS SER VAL ASN LEU MET ASN ALA SER ASN SEQRES 46 A 1253 ASP ILE THR MET GLU ASN VAL VAL HIS GLU LEU GLU LEU SEQRES 47 A 1253 TYR ASN THR GLY TYR TYR LEU GLY MET PHE MET ASN SER SEQRES 48 A 1253 PHE ALA VAL PHE GLN GLU CYS GLY LEU TRP VAL LEU THR SEQRES 49 A 1253 ASP ALA ASN LEU THR LYS ASP TYR ILE ASP GLY VAL TYR SEQRES 50 A 1253 ASP ASN ALA GLU TYR ALA GLU ARG GLU ASN LEU TYR PHE SEQRES 51 A 1253 GLN GLY HIS ILE VAL ASP ILE HIS ASP PHE SER LEU GLY SEQRES 52 A 1253 SER SER PRO HIS VAL ARG LYS HIS PHE PRO GLU THR TRP SEQRES 53 A 1253 ILE TRP LEU ASP THR ASN MET GLY TYR ARG ILE TYR GLN SEQRES 54 A 1253 GLU PHE GLU VAL THR VAL PRO ASP SER ILE THR SER TRP SEQRES 55 A 1253 VAL ALA THR GLY PHE VAL ILE SER GLU ASP LEU GLY LEU SEQRES 56 A 1253 GLY LEU THR THR THR PRO VAL GLU LEU GLN ALA PHE GLN SEQRES 57 A 1253 PRO PHE PHE ILE PHE LEU ASN LEU PRO TYR SER VAL ILE SEQRES 58 A 1253 ARG GLY GLU GLU PHE ALA LEU GLU ILE THR ILE PHE ASN SEQRES 59 A 1253 TYR LEU LYS ASP ALA THR GLU VAL LYS VAL ILE ILE GLU SEQRES 60 A 1253 LYS SER ASP LYS PHE ASP ILE LEU MET THR SER ASN GLU SEQRES 61 A 1253 ILE ASN ALA THR GLY HIS GLN GLN THR LEU LEU VAL PRO SEQRES 62 A 1253 SER GLU ASP GLY ALA THR VAL LEU PHE PRO ILE ARG PRO SEQRES 63 A 1253 THR HIS LEU GLY GLU ILE PRO ILE THR VAL THR ALA LEU SEQRES 64 A 1253 SER PRO THR ALA SER ASP ALA VAL THR GLN MET ILE LEU SEQRES 65 A 1253 VAL LYS ALA GLU GLY ILE GLU LYS SER TYR SER GLN SER SEQRES 66 A 1253 ILE LEU LEU ASP LEU THR ASP ASN ARG LEU GLN SER THR SEQRES 67 A 1253 LEU LYS THR LEU SER PHE SER PHE PRO PRO ASN THR VAL SEQRES 68 A 1253 THR GLY SER GLU ARG VAL GLN ILE THR ALA ILE GLY ASP SEQRES 69 A 1253 VAL LEU GLY PRO SER ILE ASN GLY LEU ALA SER LEU ILE SEQRES 70 A 1253 ARG MET PRO TYR GLY CYS GLY GLU GLN ASN MET ILE ASN SEQRES 71 A 1253 PHE ALA PRO ASN ILE TYR ILE LEU ASP TYR LEU THR LYS SEQRES 72 A 1253 LYS LYS GLN LEU THR ASP ASN LEU LYS GLU LYS ALA LEU SEQRES 73 A 1253 SER PHE MET ARG GLN GLY TYR GLN ARG GLU LEU LEU TYR SEQRES 74 A 1253 GLN ARG GLU ASP GLY SER PHE SER ALA PHE GLY ASN TYR SEQRES 75 A 1253 ASP PRO SER GLY SER THR TRP LEU SER ALA PHE VAL LEU SEQRES 76 A 1253 ARG CYS PHE LEU GLU ALA ASP PRO TYR ILE ASP ILE ASP SEQRES 77 A 1253 GLN ASN VAL LEU HIS ARG THR TYR THR TRP LEU LYS GLY SEQRES 78 A 1253 HIS GLN LYS SER ASN GLY GLU PHE TRP ASP PRO GLY ARG SEQRES 79 A 1253 VAL ILE HIS SER GLU LEU GLN GLY GLY ASN LYS SER PRO SEQRES 80 A 1253 VAL THR LEU THR ALA TYR ILE VAL THR SER LEU LEU GLY SEQRES 81 A 1253 TYR ARG LYS TYR GLN PRO ASN ILE ASP VAL GLN GLU SER SEQRES 82 A 1253 ILE HIS PHE LEU GLU SER GLU PHE SER ARG GLY ILE SER SEQRES 83 A 1253 ASP ASN TYR THR LEU ALA LEU ILE THR TYR ALA LEU SER SEQRES 84 A 1253 SER VAL GLY SER PRO LYS ALA LYS GLU ALA LEU ASN MET SEQRES 85 A 1253 LEU THR TRP ARG ALA GLU GLN GLU GLY GLY MET GLN PHE SEQRES 86 A 1253 TRP VAL SER SER GLU SER LYS LEU SER ASP SER TRP GLN SEQRES 87 A 1253 PRO ARG SER LEU ASP ILE GLU VAL ALA ALA TYR ALA LEU SEQRES 88 A 1253 LEU SER HIS PHE LEU GLN PHE GLN THR SER GLU GLY ILE SEQRES 89 A 1253 PRO ILE MET ARG TRP LEU SER ARG GLN ARG ASN SER LEU SEQRES 90 A 1253 GLY GLY PHE ALA SER THR GLN ASP THR THR VAL ALA LEU SEQRES 91 A 1253 LYS ALA LEU SER GLU PHE ALA ALA LEU MET ASN THR GLU SEQRES 92 A 1253 ARG THR ASN ILE GLN VAL THR VAL THR GLY PRO SER SER SEQRES 93 A 1253 PRO SER PRO VAL LYS PHE LEU ILE ASP THR HIS ASN ARG SEQRES 94 A 1253 LEU LEU LEU GLN THR ALA GLU LEU ALA VAL VAL GLN PRO SEQRES 95 A 1253 THR ALA VAL ASN ILE SER ALA ASN GLY PHE GLY PHE ALA SEQRES 96 A 1253 ILE CYS GLN LEU ASN VAL VAL TYR ASN VAL LYS ALA SER SEQRES 97 A 1253 GLY SER SER ARG ARG HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG A1301 14 HET NAG A1302 14 HET NAG A1303 14 HET NAG A1304 14 HET NAG A1305 14 HET NAG A1306 14 HET NAG A1307 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 15(C8 H15 N O6) HELIX 1 AA1 ASN A 301 SER A 306 1 6 HELIX 2 AA2 GLU A 383 ASN A 387 5 5 HELIX 3 AA3 GLU A 522 THR A 526 5 5 HELIX 4 AA4 LYS A 594 LEU A 598 1 5 HELIX 5 AA5 THR A 606 ASN A 618 1 13 HELIX 6 AA6 SER A 629 GLU A 635 1 7 HELIX 7 AA7 SER A 907 ALA A 912 1 6 HELIX 8 AA8 SER A 913 ILE A 915 5 3 HELIX 9 AA9 CYS A 921 ASN A 928 1 8 HELIX 10 AB1 PHE A 929 LYS A 943 1 15 HELIX 11 AB2 THR A 946 LEU A 966 1 21 HELIX 12 AB3 SER A 985 ASP A 1000 1 16 HELIX 13 AB4 ASP A 1006 GLY A 1019 1 14 HELIX 14 AB5 HIS A 1035 GLY A 1040 1 6 HELIX 15 AB6 SER A 1044 LEU A 1057 1 14 HELIX 16 AB7 GLY A 1058 TYR A 1062 5 5 HELIX 17 AB8 VAL A 1068 GLY A 1082 1 15 HELIX 18 AB9 ASN A 1086 GLY A 1100 1 15 HELIX 19 AC1 LYS A 1103 ARG A 1114 1 12 HELIX 20 AC2 LEU A 1140 GLN A 1155 1 16 HELIX 21 AC3 GLY A 1161 GLN A 1171 1 11 HELIX 22 AC4 THR A 1181 MET A 1198 1 18 SHEET 1 AA1 4 PHE A 85 THR A 89 0 SHEET 2 AA1 4 THR A 43 LEU A 48 -1 N ILE A 44 O LEU A 88 SHEET 3 AA1 4 PHE A 28 PRO A 33 -1 N THR A 31 O GLY A 45 SHEET 4 AA1 4 LEU A 638 THR A 642 -1 O LEU A 641 N VAL A 30 SHEET 1 AA2 5 ILE A 35 ILE A 36 0 SHEET 2 AA2 5 ILE A 114 PHE A 124 1 O SER A 123 N ILE A 36 SHEET 3 AA2 5 ILE A 101 ARG A 109 -1 N GLY A 108 O LEU A 115 SHEET 4 AA2 5 GLN A 55 ALA A 66 -1 N LYS A 59 O THR A 107 SHEET 5 AA2 5 LEU A 69 GLU A 81 -1 O LEU A 74 N LEU A 62 SHEET 1 AA3 3 SER A 130 THR A 135 0 SHEET 2 AA3 3 GLU A 145 LEU A 153 -1 O LEU A 153 N SER A 130 SHEET 3 AA3 3 VAL A 188 GLN A 194 -1 O PHE A 193 N VAL A 146 SHEET 1 AA4 5 LEU A 139 TYR A 140 0 SHEET 2 AA4 5 GLN A 213 VAL A 221 1 O GLN A 220 N TYR A 140 SHEET 3 AA4 5 GLY A 202 VAL A 210 -1 N VAL A 210 O GLN A 213 SHEET 4 AA4 5 SER A 163 LYS A 169 -1 N LEU A 167 O GLN A 207 SHEET 5 AA4 5 LEU A 175 GLN A 183 -1 O GLN A 177 N ILE A 168 SHEET 1 AA5 3 PHE A 229 GLN A 234 0 SHEET 2 AA5 3 HIS A 245 TYR A 254 -1 O LYS A 253 N GLU A 230 SHEET 3 AA5 3 SER A 289 ASN A 295 -1 O ALA A 290 N ILE A 250 SHEET 1 AA6 5 TYR A 238 SER A 240 0 SHEET 2 AA6 5 SER A 335 LYS A 345 1 O LYS A 345 N CYS A 239 SHEET 3 AA6 5 VAL A 321 GLU A 329 -1 N VAL A 327 O ARG A 336 SHEET 4 AA6 5 LYS A 261 PRO A 270 -1 N LEU A 269 O GLU A 322 SHEET 5 AA6 5 ILE A 280 ASN A 287 -1 O ILE A 280 N PHE A 268 SHEET 1 AA7 3 TYR A 349 PHE A 354 0 SHEET 2 AA7 3 PHE A 366 ARG A 374 -1 O LYS A 371 N GLU A 352 SHEET 3 AA7 3 THR A 427 PHE A 432 -1 O PHE A 428 N VAL A 370 SHEET 1 AA8 2 VAL A 359 LEU A 360 0 SHEET 2 AA8 2 SER A 458 LEU A 459 1 O SER A 458 N LEU A 360 SHEET 1 AA9 4 GLU A 413 TYR A 420 0 SHEET 2 AA9 4 VAL A 389 ARG A 396 -1 N ILE A 391 O ILE A 418 SHEET 3 AA9 4 GLU A 440 PHE A 447 -1 O LYS A 444 N THR A 392 SHEET 4 AA9 4 SER A 450 VAL A 456 -1 O MET A 454 N LEU A 443 SHEET 1 AB1 3 ILE A 468 THR A 472 0 SHEET 2 AB1 3 PHE A 483 GLY A 489 -1 O SER A 488 N GLN A 469 SHEET 3 AB1 3 MET A 516 LEU A 519 -1 O PHE A 517 N LEU A 485 SHEET 1 AB2 4 GLN A 505 GLN A 512 0 SHEET 2 AB2 4 LEU A 496 SER A 502 -1 N SER A 502 O GLN A 505 SHEET 3 AB2 4 LYS A 528 ILE A 536 -1 O ILE A 532 N MET A 499 SHEET 4 AB2 4 ILE A 542 PRO A 550 -1 O ILE A 543 N TYR A 535 SHEET 1 AB3 3 ILE A 559 TRP A 563 0 SHEET 2 AB3 3 LYS A 573 VAL A 580 -1 O ARG A 577 N TYR A 562 SHEET 3 AB3 3 TYR A 706 THR A 712 -1 O PHE A 709 N LEU A 576 SHEET 1 AB4 5 LYS A 567 ALA A 568 0 SHEET 2 AB4 5 VAL A 740 ALA A 744 1 O GLN A 743 N ALA A 568 SHEET 3 AB4 5 THR A 718 SER A 728 -1 N TRP A 720 O LEU A 742 SHEET 4 AB4 5 ILE A 586 ASP A 593 -1 N ILE A 586 O ILE A 727 SHEET 5 AB4 5 THR A 693 ASN A 700 -1 O LEU A 697 N ILE A 589 SHEET 1 AB5 4 LYS A 567 ALA A 568 0 SHEET 2 AB5 4 VAL A 740 ALA A 744 1 O GLN A 743 N ALA A 568 SHEET 3 AB5 4 THR A 718 SER A 728 -1 N TRP A 720 O LEU A 742 SHEET 4 AB5 4 GLY A 732 LEU A 735 -1 O GLY A 734 N VAL A 726 SHEET 1 AB6 3 VAL A 686 ARG A 687 0 SHEET 2 AB6 3 SER A 842 LYS A 852 1 O THR A 846 N ARG A 687 SHEET 3 AB6 3 SER A 757 ILE A 759 1 N VAL A 758 O LYS A 852 SHEET 1 AB7 5 VAL A 686 ARG A 687 0 SHEET 2 AB7 5 SER A 842 LYS A 852 1 O THR A 846 N ARG A 687 SHEET 3 AB7 5 GLY A 828 LEU A 837 -1 N GLY A 828 O VAL A 851 SHEET 4 AB7 5 THR A 778 ILE A 784 -1 N ILE A 783 O THR A 835 SHEET 5 AB7 5 GLN A 805 VAL A 810 -1 O VAL A 810 N THR A 778 SHEET 1 AB8 4 PHE A 748 ASN A 753 0 SHEET 2 AB8 4 PHE A 764 ASN A 772 -1 O THR A 769 N PHE A 751 SHEET 3 AB8 4 ASP A 814 PRO A 824 -1 O ILE A 822 N PHE A 764 SHEET 4 AB8 4 PHE A 790 ILE A 792 -1 N ASP A 791 O ARG A 823 SHEET 1 AB9 4 ILE A 856 LEU A 868 0 SHEET 2 AB9 4 GLY A1251 VAL A1263 -1 O TYR A1261 N LYS A 858 SHEET 3 AB9 4 ARG A 894 ILE A 900 -1 N GLN A 896 O ASN A1258 SHEET 4 AB9 4 GLN A1231 LEU A1235 -1 O ALA A1233 N ILE A 897 SHEET 1 AC1 4 SER A 875 PHE A 882 0 SHEET 2 AC1 4 THR A1241 ASN A1248 -1 O VAL A1243 N LEU A 880 SHEET 3 AC1 4 ASN A1204 THR A1210 -1 N GLN A1206 O ASN A1248 SHEET 4 AC1 4 VAL A1218 ASP A1223 -1 O ILE A1222 N ILE A1205 SHEET 1 AC2 2 GLU A1116 GLN A1117 0 SHEET 2 AC2 2 GLN A1122 PHE A1123 -1 O PHE A1123 N GLU A1116 SSBOND 1 CYS A 530 CYS A 636 1555 1555 2.03 LINK ND2 ASN A 41 C1 NAG A1301 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG A1302 1555 1555 1.44 LINK ND2 ASN A 247 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 279 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 291 C1 NAG A1303 1555 1555 1.44 LINK ND2 ASN A 337 C1 NAG A1304 1555 1555 1.44 LINK ND2 ASN A 365 C1 NAG A1305 1555 1555 1.44 LINK ND2 ASN A 419 C1 NAG A1306 1555 1555 1.44 LINK ND2 ASN A 513 C1 NAG A1307 1555 1555 1.44 LINK ND2 ASN A1086 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A1244 C1 NAG E 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 CISPEP 1 THR A 526 PRO A 527 0 -2.89 CISPEP 2 GLN A 1239 PRO A 1240 0 -7.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 133 9415 CONECT 722 9429 CONECT 1787 9303 CONECT 2039 9359 CONECT 2129 9443 CONECT 2407 9457 CONECT 2646 9471 CONECT 2985 9485 CONECT 3724 9499 CONECT 3855 4700 CONECT 4700 3855 CONECT 8010 9331 CONECT 9150 9387 CONECT 9303 1787 9304 9314 CONECT 9304 9303 9305 9311 CONECT 9305 9304 9306 9312 CONECT 9306 9305 9307 9313 CONECT 9307 9306 9308 9314 CONECT 9308 9307 9315 CONECT 9309 9310 9311 9316 CONECT 9310 9309 CONECT 9311 9304 9309 CONECT 9312 9305 CONECT 9313 9306 9317 CONECT 9314 9303 9307 CONECT 9315 9308 CONECT 9316 9309 CONECT 9317 9313 9318 9328 CONECT 9318 9317 9319 9325 CONECT 9319 9318 9320 9326 CONECT 9320 9319 9321 9327 CONECT 9321 9320 9322 9328 CONECT 9322 9321 9329 CONECT 9323 9324 9325 9330 CONECT 9324 9323 CONECT 9325 9318 9323 CONECT 9326 9319 CONECT 9327 9320 CONECT 9328 9317 9321 CONECT 9329 9322 CONECT 9330 9323 CONECT 9331 8010 9332 9342 CONECT 9332 9331 9333 9339 CONECT 9333 9332 9334 9340 CONECT 9334 9333 9335 9341 CONECT 9335 9334 9336 9342 CONECT 9336 9335 9343 CONECT 9337 9338 9339 9344 CONECT 9338 9337 CONECT 9339 9332 9337 CONECT 9340 9333 CONECT 9341 9334 9345 CONECT 9342 9331 9335 CONECT 9343 9336 CONECT 9344 9337 CONECT 9345 9341 9346 9356 CONECT 9346 9345 9347 9353 CONECT 9347 9346 9348 9354 CONECT 9348 9347 9349 9355 CONECT 9349 9348 9350 9356 CONECT 9350 9349 9357 CONECT 9351 9352 9353 9358 CONECT 9352 9351 CONECT 9353 9346 9351 CONECT 9354 9347 CONECT 9355 9348 CONECT 9356 9345 9349 CONECT 9357 9350 CONECT 9358 9351 CONECT 9359 2039 9360 9370 CONECT 9360 9359 9361 9367 CONECT 9361 9360 9362 9368 CONECT 9362 9361 9363 9369 CONECT 9363 9362 9364 9370 CONECT 9364 9363 9371 CONECT 9365 9366 9367 9372 CONECT 9366 9365 CONECT 9367 9360 9365 CONECT 9368 9361 CONECT 9369 9362 9373 CONECT 9370 9359 9363 CONECT 9371 9364 CONECT 9372 9365 CONECT 9373 9369 9374 9384 CONECT 9374 9373 9375 9381 CONECT 9375 9374 9376 9382 CONECT 9376 9375 9377 9383 CONECT 9377 9376 9378 9384 CONECT 9378 9377 9385 CONECT 9379 9380 9381 9386 CONECT 9380 9379 CONECT 9381 9374 9379 CONECT 9382 9375 CONECT 9383 9376 CONECT 9384 9373 9377 CONECT 9385 9378 CONECT 9386 9379 CONECT 9387 9150 9388 9398 CONECT 9388 9387 9389 9395 CONECT 9389 9388 9390 9396 CONECT 9390 9389 9391 9397 CONECT 9391 9390 9392 9398 CONECT 9392 9391 9399 CONECT 9393 9394 9395 9400 CONECT 9394 9393 CONECT 9395 9388 9393 CONECT 9396 9389 CONECT 9397 9390 9401 CONECT 9398 9387 9391 CONECT 9399 9392 CONECT 9400 9393 CONECT 9401 9397 9402 9412 CONECT 9402 9401 9403 9409 CONECT 9403 9402 9404 9410 CONECT 9404 9403 9405 9411 CONECT 9405 9404 9406 9412 CONECT 9406 9405 9413 CONECT 9407 9408 9409 9414 CONECT 9408 9407 CONECT 9409 9402 9407 CONECT 9410 9403 CONECT 9411 9404 CONECT 9412 9401 9405 CONECT 9413 9406 CONECT 9414 9407 CONECT 9415 133 9416 9426 CONECT 9416 9415 9417 9423 CONECT 9417 9416 9418 9424 CONECT 9418 9417 9419 9425 CONECT 9419 9418 9420 9426 CONECT 9420 9419 9427 CONECT 9421 9422 9423 9428 CONECT 9422 9421 CONECT 9423 9416 9421 CONECT 9424 9417 CONECT 9425 9418 CONECT 9426 9415 9419 CONECT 9427 9420 CONECT 9428 9421 CONECT 9429 722 9430 9440 CONECT 9430 9429 9431 9437 CONECT 9431 9430 9432 9438 CONECT 9432 9431 9433 9439 CONECT 9433 9432 9434 9440 CONECT 9434 9433 9441 CONECT 9435 9436 9437 9442 CONECT 9436 9435 CONECT 9437 9430 9435 CONECT 9438 9431 CONECT 9439 9432 CONECT 9440 9429 9433 CONECT 9441 9434 CONECT 9442 9435 CONECT 9443 2129 9444 9454 CONECT 9444 9443 9445 9451 CONECT 9445 9444 9446 9452 CONECT 9446 9445 9447 9453 CONECT 9447 9446 9448 9454 CONECT 9448 9447 9455 CONECT 9449 9450 9451 9456 CONECT 9450 9449 CONECT 9451 9444 9449 CONECT 9452 9445 CONECT 9453 9446 CONECT 9454 9443 9447 CONECT 9455 9448 CONECT 9456 9449 CONECT 9457 2407 9458 9468 CONECT 9458 9457 9459 9465 CONECT 9459 9458 9460 9466 CONECT 9460 9459 9461 9467 CONECT 9461 9460 9462 9468 CONECT 9462 9461 9469 CONECT 9463 9464 9465 9470 CONECT 9464 9463 CONECT 9465 9458 9463 CONECT 9466 9459 CONECT 9467 9460 CONECT 9468 9457 9461 CONECT 9469 9462 CONECT 9470 9463 CONECT 9471 2646 9472 9482 CONECT 9472 9471 9473 9479 CONECT 9473 9472 9474 9480 CONECT 9474 9473 9475 9481 CONECT 9475 9474 9476 9482 CONECT 9476 9475 9483 CONECT 9477 9478 9479 9484 CONECT 9478 9477 CONECT 9479 9472 9477 CONECT 9480 9473 CONECT 9481 9474 CONECT 9482 9471 9475 CONECT 9483 9476 CONECT 9484 9477 CONECT 9485 2985 9486 9496 CONECT 9486 9485 9487 9493 CONECT 9487 9486 9488 9494 CONECT 9488 9487 9489 9495 CONECT 9489 9488 9490 9496 CONECT 9490 9489 9497 CONECT 9491 9492 9493 9498 CONECT 9492 9491 CONECT 9493 9486 9491 CONECT 9494 9487 CONECT 9495 9488 CONECT 9496 9485 9489 CONECT 9497 9490 CONECT 9498 9491 CONECT 9499 3724 9500 9510 CONECT 9500 9499 9501 9507 CONECT 9501 9500 9502 9508 CONECT 9502 9501 9503 9509 CONECT 9503 9502 9504 9510 CONECT 9504 9503 9511 CONECT 9505 9506 9507 9512 CONECT 9506 9505 CONECT 9507 9500 9505 CONECT 9508 9501 CONECT 9509 9502 CONECT 9510 9499 9503 CONECT 9511 9504 CONECT 9512 9505 MASTER 250 0 15 22 75 0 0 6 9511 1 223 97 END