HEADER VIRUS 02-JUL-24 9FX9 TITLE CRYOEM STRUCTURE OF RV-A89 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN VP2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: P1B,VIRION PROTEIN 2; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CAPSID PROTEIN VP3; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: P1C,VIRION PROTEIN 3; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 3 ORGANISM_TAXID: 650130; SOURCE 4 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 650130; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 8 ORGANISM_TAXID: 650130; SOURCE 9 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 650130; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 13 ORGANISM_TAXID: 650130; SOURCE 14 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 650130 KEYWDS RV-A89, RHINOVIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR J.WALD,N.GOESSWEINER-MOHR,D.BLAAS,T.C.MARLOVITS REVDAT 1 18-DEC-24 9FX9 0 JRNL AUTH J.WALD,N.GOESSWEINER-MOHR,A.REAL-HOHN,D.BLAAS,T.C.MARLOVITS JRNL TITL DMSO MIGHT IMPACT LIGAND BINDING, CAPSID STABILITY, AND RNA JRNL TITL 2 INTERACTION IN VIRAL PREPARATIONS. JRNL REF SCI REP V. 14 30408 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 39639094 JRNL DOI 10.1038/S41598-024-81789-X REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 ROSETTA, ISOLDE, RELION, RELION, RELION, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 1.960 REMARK 3 NUMBER OF PARTICLES : 27000 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139733. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN RHINOVIRUS 89 ATCC VR REMARK 245 -1199 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4860 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 180-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.17.1_B42449. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.308923 0.500178 -0.808942 206.48297 REMARK 350 BIOMT2 2 0.500178 -0.808867 -0.309121 334.07015 REMARK 350 BIOMT3 2 -0.808942 -0.309121 -0.500056 540.66272 REMARK 350 BIOMT1 3 0.809000 0.309166 0.499935 -127.63590 REMARK 350 BIOMT2 3 -0.308895 -0.500000 0.809064 206.47038 REMARK 350 BIOMT3 3 0.500103 -0.808960 -0.309000 334.08205 REMARK 350 BIOMT1 4 -0.500000 0.808988 0.309093 78.89478 REMARK 350 BIOMT2 4 -0.809017 -0.308971 -0.500028 540.63924 REMARK 350 BIOMT3 4 -0.309016 -0.500076 0.808971 206.53225 REMARK 350 BIOMT1 5 -0.309045 0.500028 0.808989 0.02907 REMARK 350 BIOMT2 5 -0.499982 -0.809017 0.309046 413.00110 REMARK 350 BIOMT3 5 0.809017 -0.308971 0.500028 -0.02977 REMARK 350 BIOMT1 6 -0.308989 0.500093 -0.808970 334.11769 REMARK 350 BIOMT2 6 -0.499897 -0.809017 -0.309184 540.64981 REMARK 350 BIOMT3 6 -0.809091 0.308867 0.499972 206.56960 REMARK 350 BIOMT1 7 1.000000 0.000243 0.000034 -0.05715 REMARK 350 BIOMT2 7 0.000243 -1.000000 0.000000 412.95168 REMARK 350 BIOMT3 7 0.000034 0.000000 -1.000000 412.99891 REMARK 350 BIOMT1 8 0.499804 0.809092 0.309138 -127.61551 REMARK 350 BIOMT2 8 0.809138 -0.308821 -0.499925 206.40550 REMARK 350 BIOMT3 8 -0.309018 0.500000 -0.809017 334.13543 REMARK 350 BIOMT1 9 -0.000138 1.000000 -0.000075 0.06324 REMARK 350 BIOMT2 9 -0.000063 0.000075 1.000000 -0.00444 REMARK 350 BIOMT3 9 1.000000 0.000138 0.000063 -0.05879 REMARK 350 BIOMT1 10 0.500011 0.809046 -0.308924 -0.01712 REMARK 350 BIOMT2 10 -0.808971 0.309017 -0.500074 413.02423 REMARK 350 BIOMT3 10 -0.309120 0.499953 0.809006 0.03956 REMARK 350 BIOMT1 11 -0.500000 0.809000 -0.309062 206.54329 REMARK 350 BIOMT2 11 -0.809063 -0.309063 0.499897 334.18036 REMARK 350 BIOMT3 11 0.308896 0.499999 0.809063 -127.61467 REMARK 350 BIOMT1 12 0.809034 0.309185 -0.499868 78.81560 REMARK 350 BIOMT2 12 -0.308821 -0.500000 -0.809092 540.60898 REMARK 350 BIOMT3 12 -0.500093 0.808953 -0.309034 206.54930 REMARK 350 BIOMT1 13 0.308868 0.500093 0.809016 -127.60131 REMARK 350 BIOMT2 13 0.500093 -0.808924 0.309109 206.43329 REMARK 350 BIOMT3 13 0.809016 0.309109 -0.499944 78.83333 REMARK 350 BIOMT1 14 -0.000138 -0.000063 1.000000 0.05880 REMARK 350 BIOMT2 14 1.000000 0.000075 0.000138 -0.06323 REMARK 350 BIOMT3 14 -0.000075 1.000000 0.000063 0.00445 REMARK 350 BIOMT1 15 -0.809017 0.308868 -0.500092 413.08747 REMARK 350 BIOMT2 15 -0.309213 0.499925 0.808989 0.06607 REMARK 350 BIOMT3 15 0.499879 0.809120 -0.308942 -0.01876 REMARK 350 BIOMT1 16 0.809092 -0.308970 -0.499908 206.46136 REMARK 350 BIOMT2 16 -0.308989 0.499925 -0.809074 334.15455 REMARK 350 BIOMT3 16 0.499896 0.809081 0.309017 -127.62453 REMARK 350 BIOMT1 17 0.000138 0.000029 -1.000000 412.98842 REMARK 350 BIOMT2 17 -1.000000 -0.000168 -0.000138 413.08420 REMARK 350 BIOMT3 17 -0.000168 1.000000 0.000029 0.03066 REMARK 350 BIOMT1 18 0.809000 -0.308895 0.500103 -0.04025 REMARK 350 BIOMT2 18 0.309166 -0.500000 -0.808960 412.95490 REMARK 350 BIOMT3 18 0.499935 0.809064 -0.309000 -0.00663 REMARK 350 BIOMT1 19 -0.809109 0.308943 0.499897 206.59020 REMARK 350 BIOMT2 19 0.308943 -0.500000 0.809045 78.87826 REMARK 350 BIOMT3 19 0.499897 0.809045 0.309109 -127.63638 REMARK 350 BIOMT1 20 -0.500000 -0.809063 0.308896 413.06433 REMARK 350 BIOMT2 20 0.809000 -0.309063 0.499999 -0.00327 REMARK 350 BIOMT3 20 -0.309062 0.499897 0.809063 0.02743 REMARK 350 BIOMT1 21 -0.499793 -0.809109 -0.309110 540.65134 REMARK 350 BIOMT2 21 -0.809109 0.308774 0.500001 206.58445 REMARK 350 BIOMT3 21 -0.309110 0.500001 -0.808981 334.14683 REMARK 350 BIOMT1 22 0.000104 -1.000000 0.000075 412.98398 REMARK 350 BIOMT2 22 -0.000029 -0.000075 -1.000000 413.02541 REMARK 350 BIOMT3 22 1.000000 0.000104 -0.000029 -0.03259 REMARK 350 BIOMT1 23 0.500196 -0.808913 -0.308972 334.06431 REMARK 350 BIOMT2 23 -0.808925 -0.309213 -0.500028 540.67020 REMARK 350 BIOMT3 23 0.308941 0.500047 -0.809017 206.50472 REMARK 350 BIOMT1 24 -0.309045 -0.499982 0.809017 206.52624 REMARK 350 BIOMT2 24 0.500028 -0.809017 -0.308971 334.10118 REMARK 350 BIOMT3 24 0.808989 0.309046 0.500028 -127.64492 REMARK 350 BIOMT1 25 -0.808925 -0.309045 -0.500132 540.67608 REMARK 350 BIOMT2 25 -0.309045 -0.500150 0.808913 206.56331 REMARK 350 BIOMT3 25 -0.500132 0.808913 0.309075 78.92391 REMARK 350 BIOMT1 26 -0.308989 -0.499897 -0.809091 540.64149 REMARK 350 BIOMT2 26 0.500093 -0.809017 0.308867 206.50252 REMARK 350 BIOMT3 26 -0.808970 -0.309184 0.499972 334.17262 REMARK 350 BIOMT1 27 0.500196 -0.808925 0.308941 206.46591 REMARK 350 BIOMT2 27 -0.808913 -0.309213 0.500047 334.14934 REMARK 350 BIOMT3 27 -0.308972 -0.500028 -0.809017 540.63248 REMARK 350 BIOMT1 28 -0.808959 -0.309064 0.500065 334.14349 REMARK 350 BIOMT2 28 -0.309064 -0.500000 -0.808999 540.63996 REMARK 350 BIOMT3 28 0.500065 -0.808999 0.308959 206.48767 REMARK 350 BIOMT1 29 0.309111 -0.499897 0.809045 78.84139 REMARK 350 BIOMT2 29 -0.499897 -0.809110 -0.308942 540.61884 REMARK 350 BIOMT3 29 0.809045 -0.308942 -0.500001 206.46737 REMARK 350 BIOMT1 30 -1.000000 0.000000 -0.000034 413.04722 REMARK 350 BIOMT2 30 0.000000 -1.000000 -0.000093 413.02097 REMARK 350 BIOMT3 30 -0.000034 -0.000093 1.000000 0.02621 REMARK 350 BIOMT1 31 0.309166 -0.499832 -0.809064 412.96099 REMARK 350 BIOMT2 31 -0.499832 -0.809167 0.308896 413.03203 REMARK 350 BIOMT3 31 -0.809064 0.308896 -0.499999 413.05489 REMARK 350 BIOMT1 32 0.499989 0.809034 0.308989 -127.61117 REMARK 350 BIOMT2 32 -0.809017 0.309017 0.500001 206.51522 REMARK 350 BIOMT3 32 0.309035 -0.499972 0.809028 78.85913 REMARK 350 BIOMT1 33 -0.000104 1.000000 0.000168 0.00609 REMARK 350 BIOMT2 33 0.000063 0.000168 -1.000000 412.95613 REMARK 350 BIOMT3 33 -1.000000 -0.000104 -0.000063 413.05770 REMARK 350 BIOMT1 34 0.499804 0.809138 -0.309018 0.02596 REMARK 350 BIOMT2 34 0.809092 -0.308821 0.500000 -0.07255 REMARK 350 BIOMT3 34 0.309138 -0.499925 -0.809017 412.95935 REMARK 350 BIOMT1 35 -0.500186 0.808942 -0.308914 206.56288 REMARK 350 BIOMT2 35 0.808942 0.309260 -0.499972 78.82145 REMARK 350 BIOMT3 35 -0.308914 -0.499972 -0.809074 540.62063 REMARK 350 BIOMT1 36 0.808942 0.309091 -0.500075 78.89668 REMARK 350 BIOMT2 36 0.309017 0.500075 0.808970 -127.63816 REMARK 350 BIOMT3 36 0.500121 -0.808942 0.309017 206.45230 REMARK 350 BIOMT1 37 0.309017 0.499907 0.809074 -127.60566 REMARK 350 BIOMT2 37 -0.500018 0.809046 -0.308913 206.48743 REMARK 350 BIOMT3 37 -0.809006 -0.309092 0.499971 334.16123 REMARK 350 BIOMT1 38 0.000104 -0.000029 1.000000 0.00164 REMARK 350 BIOMT2 38 -1.000000 -0.000075 0.000104 413.01492 REMARK 350 BIOMT3 38 0.000075 -1.000000 -0.000029 412.99447 REMARK 350 BIOMT1 39 -0.809075 0.309016 -0.499907 413.03032 REMARK 350 BIOMT2 39 0.309016 -0.499850 -0.809110 412.98586 REMARK 350 BIOMT3 39 -0.499907 -0.809110 0.308925 413.03175 REMARK 350 BIOMT1 40 0.809034 -0.308821 -0.500093 206.48095 REMARK 350 BIOMT2 40 0.309185 -0.500000 0.808953 78.84724 REMARK 350 BIOMT3 40 -0.499868 -0.809092 -0.309034 540.63048 REMARK 350 BIOMT1 41 -0.000104 0.000063 -1.000000 413.03150 REMARK 350 BIOMT2 41 1.000000 0.000168 -0.000104 -0.03229 REMARK 350 BIOMT3 41 0.000168 -1.000000 -0.000063 412.98233 REMARK 350 BIOMT1 42 0.809092 -0.308989 0.499896 0.00281 REMARK 350 BIOMT2 42 -0.308970 0.499925 0.809081 -0.00323 REMARK 350 BIOMT3 42 -0.499908 -0.809074 0.309017 413.00554 REMARK 350 BIOMT1 43 -0.809017 0.308849 0.500104 206.54785 REMARK 350 BIOMT2 43 -0.309139 0.500075 -0.808924 334.12355 REMARK 350 BIOMT3 43 -0.499925 -0.809035 -0.309092 540.64233 REMARK 350 BIOMT1 44 -0.499814 -0.809121 0.309045 413.00718 REMARK 350 BIOMT2 44 -0.809121 0.308867 -0.499924 413.05518 REMARK 350 BIOMT3 44 0.309045 -0.499924 -0.809053 412.98556 REMARK 350 BIOMT1 45 -0.500000 -0.809017 -0.309016 540.65570 REMARK 350 BIOMT2 45 0.808988 -0.308971 -0.500076 206.49843 REMARK 350 BIOMT3 45 0.309093 -0.500028 0.808971 78.87052 REMARK 350 BIOMT1 46 0.000138 -1.000000 -0.000168 413.02705 REMARK 350 BIOMT2 46 0.000029 -0.000168 1.000000 0.02650 REMARK 350 BIOMT3 46 -1.000000 -0.000138 0.000029 413.04558 REMARK 350 BIOMT1 47 0.500011 -0.808971 -0.309120 334.14540 REMARK 350 BIOMT2 47 0.809046 0.309017 0.499953 -127.63744 REMARK 350 BIOMT3 47 -0.308924 -0.500074 0.809006 206.50559 REMARK 350 BIOMT1 48 -0.308896 -0.500168 0.808960 206.54582 REMARK 350 BIOMT2 48 -0.500103 0.808896 0.309167 78.90063 REMARK 350 BIOMT3 48 -0.808999 -0.309063 -0.500000 540.65087 REMARK 350 BIOMT1 49 -0.809017 -0.309139 -0.499925 540.67174 REMARK 350 BIOMT2 49 0.308849 0.500075 -0.809035 206.51958 REMARK 350 BIOMT3 49 0.500104 -0.808924 -0.309092 334.09344 REMARK 350 BIOMT1 50 -0.308896 -0.500103 -0.808999 540.64583 REMARK 350 BIOMT2 50 -0.500168 0.808896 -0.309063 206.58036 REMARK 350 BIOMT3 50 0.808960 0.309167 -0.500000 78.84473 REMARK 350 BIOMT1 51 0.499989 -0.809017 0.309035 206.50828 REMARK 350 BIOMT2 51 0.809034 0.309017 -0.499972 78.85246 REMARK 350 BIOMT3 51 0.308989 0.500000 0.809028 -127.62653 REMARK 350 BIOMT1 52 -0.809017 -0.309213 0.499879 334.22458 REMARK 350 BIOMT2 52 0.308868 0.499925 0.809120 -127.60719 REMARK 350 BIOMT3 52 -0.500092 0.808989 -0.308942 206.52264 REMARK 350 BIOMT1 53 0.309017 -0.500103 0.808953 78.92248 REMARK 350 BIOMT2 53 0.499972 0.808988 0.309138 -127.64802 REMARK 350 BIOMT3 53 -0.809035 0.308925 0.500029 206.53423 REMARK 350 BIOMT1 54 -1.000000 -0.000243 0.000000 413.09028 REMARK 350 BIOMT2 54 -0.000243 1.000000 0.000093 0.03095 REMARK 350 BIOMT3 54 0.000000 0.000093 -1.000000 412.98679 REMARK 350 BIOMT1 55 0.309017 -0.500018 -0.809006 413.01815 REMARK 350 BIOMT2 55 0.499907 0.809046 -0.309092 0.01987 REMARK 350 BIOMT3 55 0.809074 -0.308913 0.499971 -0.04190 REMARK 350 BIOMT1 56 0.309017 0.499972 -0.809035 206.52532 REMARK 350 BIOMT2 56 -0.500103 0.808988 0.308925 78.93164 REMARK 350 BIOMT3 56 0.808953 0.309138 0.500029 -127.65677 REMARK 350 BIOMT1 57 0.808942 0.309017 0.500121 -127.63156 REMARK 350 BIOMT2 57 0.309091 0.500075 -0.808942 206.45033 REMARK 350 BIOMT3 57 -0.500075 0.808970 0.309017 78.91251 REMARK 350 BIOMT1 58 -0.500207 0.808896 0.308999 78.97587 REMARK 350 BIOMT2 58 0.808896 0.309167 0.500103 -127.66840 REMARK 350 BIOMT3 58 0.308999 0.500103 -0.808960 206.46935 REMARK 350 BIOMT1 59 -0.309138 0.499822 0.809081 0.07214 REMARK 350 BIOMT2 59 0.499907 0.809138 -0.308850 -0.04941 REMARK 350 BIOMT3 59 -0.809028 0.308988 -0.500000 413.02868 REMARK 350 BIOMT1 60 -0.309138 0.499907 -0.809028 334.19878 REMARK 350 BIOMT2 60 0.499822 0.809138 0.308988 -127.61704 REMARK 350 BIOMT3 60 0.809081 -0.308850 -0.500000 206.44071 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 91 REMARK 465 THR A 92 REMARK 465 GLU A 93 REMARK 465 HIS A 94 REMARK 465 ASP A 95 REMARK 465 LYS A 96 REMARK 465 ILE A 97 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 ASN A 141 REMARK 465 ASP A 142 REMARK 465 SER A 143 REMARK 465 GLN A 234 REMARK 465 LYS A 235 REMARK 465 HIS A 236 REMARK 465 ASP B 46 REMARK 465 ALA B 47 REMARK 465 THR B 48 REMARK 465 ALA B 49 REMARK 465 ILE B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 PRO B 158 REMARK 465 SER B 159 REMARK 465 ARG B 160 REMARK 465 THR B 161 REMARK 465 SER B 162 REMARK 465 SER B 163 REMARK 465 ASP B 164 REMARK 465 PRO C 180 REMARK 465 ASP C 181 REMARK 465 THR C 182 REMARK 465 TYR C 183 REMARK 465 SER C 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 152 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 62 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 114 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 99 -66.99 60.85 REMARK 500 PHE A 191 106.20 -59.31 REMARK 500 CYS A 255 82.12 57.01 REMARK 500 HIS A 268 -20.67 58.02 REMARK 500 TYR B 35 18.02 56.83 REMARK 500 ASP B 57 -145.40 54.69 REMARK 500 ASN B 61 49.70 -81.58 REMARK 500 PHE B 176 12.07 57.15 REMARK 500 THR C 7 151.72 70.13 REMARK 500 ASP C 18 44.34 -140.61 REMARK 500 TYR C 27 -31.49 66.88 REMARK 500 LEU C 127 145.94 -173.98 REMARK 500 LEU C 223 81.91 58.87 REMARK 500 ASN C 228 21.84 -72.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 152 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50844 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF RV-A89 DBREF 9FX9 A 64 274 UNP P07210 POLG_HRV8A 635 845 DBREF 9FX9 B 14 259 UNP P07210 POLG_HRV8A 83 328 DBREF 9FX9 C 3 231 UNP P07210 POLG_HRV8A 339 567 SEQRES 1 A 211 THR ARG ASP GLU THR SER ILE GLU SER PHE LEU GLY ARG SEQRES 2 A 211 SER GLY CYS ILE ALA MET ILE GLU PHE ASN THR SER SER SEQRES 3 A 211 ASP LYS THR GLU HIS ASP LYS ILE GLY LYS GLY PHE LYS SEQRES 4 A 211 THR TRP LYS VAL SER LEU GLN GLU MET ALA GLN ILE ARG SEQRES 5 A 211 ARG LYS TYR GLU LEU PHE THR TYR THR ARG PHE ASP SER SEQRES 6 A 211 GLU ILE THR ILE VAL THR ALA ALA ALA ALA GLN GLY ASN SEQRES 7 A 211 ASP SER GLY HIS ILE VAL LEU GLN PHE MET TYR VAL PRO SEQRES 8 A 211 PRO GLY ALA PRO VAL PRO GLU LYS ARG ASP ASP TYR THR SEQRES 9 A 211 TRP GLN SER GLY THR ASN ALA SER VAL PHE TRP GLN GLU SEQRES 10 A 211 GLY GLN PRO TYR PRO ARG PHE THR ILE PRO PHE MET SER SEQRES 11 A 211 ILE ALA SER ALA TYR TYR MET PHE TYR ASP GLY TYR ASP SEQRES 12 A 211 GLY ASP SER ALA ALA SER LYS TYR GLY SER VAL VAL THR SEQRES 13 A 211 ASN ASP MET GLY THR ILE CYS VAL ARG ILE VAL THR SER SEQRES 14 A 211 ASN GLN LYS HIS ASP SER ASN ILE VAL CYS ARG ILE TYR SEQRES 15 A 211 HIS LYS ALA LYS HIS ILE LYS ALA TRP CYS PRO ARG PRO SEQRES 16 A 211 PRO ARG ALA VAL ALA TYR GLN HIS THR HIS SER THR ASN SEQRES 17 A 211 TYR ILE PRO SEQRES 1 B 246 ILE GLN ILE THR ARG GLY ASP SER THR ILE THR SER GLN SEQRES 2 B 246 ASP THR ALA ASN ALA VAL VAL ALA TYR GLY VAL TRP PRO SEQRES 3 B 246 SER TYR LEU THR PRO ASP ASP ALA THR ALA ILE ASP LYS SEQRES 4 B 246 PRO THR GLN PRO ASP THR SER SER ASN ARG PHE TYR THR SEQRES 5 B 246 LEU ASP SER ARG SER TRP THR SER ALA SER SER GLY TRP SEQRES 6 B 246 TRP TRP LYS LEU PRO ASP ALA LEU LYS ASN MET GLY ILE SEQRES 7 B 246 PHE GLY GLU ASN MET PHE TYR HIS PHE LEU GLY ARG SER SEQRES 8 B 246 GLY TYR THR ILE HIS VAL GLN CYS ASN SER SER LYS PHE SEQRES 9 B 246 HIS GLN GLY LEU LEU ILE VAL ALA ALA ILE PRO GLU HIS SEQRES 10 B 246 GLN LEU ALA SER ALA THR SER GLY ASN VAL SER VAL GLY SEQRES 11 B 246 TYR ASN HIS THR HIS PRO GLY GLU GLN GLY ARG GLU VAL SEQRES 12 B 246 VAL PRO SER ARG THR SER SER ASP ASN LYS ARG PRO SER SEQRES 13 B 246 ASP ASP SER TRP LEU ASN PHE ASP GLY THR LEU LEU GLY SEQRES 14 B 246 ASN LEU PRO ILE TYR PRO HIS GLN TYR ILE ASN LEU ARG SEQRES 15 B 246 THR ASN ASN SER ALA THR LEU ILE LEU PRO TYR VAL ASN SEQRES 16 B 246 ALA VAL PRO MET ASP SER MET LEU ARG HIS ASN ASN TRP SEQRES 17 B 246 SER LEU VAL ILE ILE PRO ILE CYS PRO LEU GLN VAL GLN SEQRES 18 B 246 PRO GLY GLY THR GLN SER ILE PRO ILE THR VAL SER ILE SEQRES 19 B 246 SER PRO MET PHE SER GLU PHE SER GLY PRO ARG SER SEQRES 1 C 229 PRO VAL MET LEU THR PRO GLY SER GLY GLN PHE LEU THR SEQRES 2 C 229 THR ASP ASP THR GLN SER PRO SER ALA PHE PRO TYR PHE SEQRES 3 C 229 HIS PRO THR LYS GLU ILE PHE ILE PRO GLY GLN VAL ARG SEQRES 4 C 229 ASN LEU ILE GLU MET CYS GLN VAL ASP THR LEU ILE PRO SEQRES 5 C 229 VAL ASN ASN THR GLN GLU ASN VAL ARG SER VAL ASN MET SEQRES 6 C 229 TYR THR VAL ASP LEU ARG THR GLN VAL ASP LEU ALA LYS SEQRES 7 C 229 GLU VAL PHE SER ILE PRO VAL ASP ILE ALA SER GLN PRO SEQRES 8 C 229 LEU ALA THR THR LEU ILE GLY GLU LEU ALA SER TYR TYR SEQRES 9 C 229 THR HIS TRP THR GLY SER LEU ARG PHE SER PHE MET PHE SEQRES 10 C 229 CYS GLY SER ALA SER SER THR LEU LYS LEU LEU ILE ALA SEQRES 11 C 229 TYR THR PRO PRO GLY VAL GLY LYS PRO LYS SER ARG ARG SEQRES 12 C 229 GLU ALA MET LEU GLY THR HIS LEU VAL TRP ASP VAL GLY SEQRES 13 C 229 LEU GLN SER THR ALA SER LEU VAL VAL PRO TRP VAL SER SEQRES 14 C 229 ALA SER HIS PHE ARG PHE THR THR PRO ASP THR TYR SER SEQRES 15 C 229 SER ALA GLY TYR ILE THR CYS TRP TYR GLN THR ASN PHE SEQRES 16 C 229 VAL VAL PRO ASP SER THR PRO ASP ASN ALA LYS MET VAL SEQRES 17 C 229 CYS MET VAL SER ALA CYS LYS ASP PHE CYS LEU ARG LEU SEQRES 18 C 229 ALA ARG ASP THR ASN LEU HIS THR HELIX 1 AA1 ARG A 65 THR A 68 5 4 HELIX 2 AA2 SER A 69 GLY A 75 1 7 HELIX 3 AA3 MET A 111 GLU A 119 1 9 HELIX 4 AA4 ASP A 165 SER A 170 5 6 HELIX 5 AA5 ASP B 27 ALA B 31 5 5 HELIX 6 AA6 TYR B 35 VAL B 37 5 3 HELIX 7 AA7 PRO B 56 SER B 60 5 5 HELIX 8 AA8 PRO B 83 LYS B 87 5 5 HELIX 9 AA9 MET B 89 TYR B 98 1 10 HELIX 10 AB1 GLY B 143 HIS B 148 1 6 HELIX 11 AB2 PRO B 149 GLY B 153 5 5 HELIX 12 AB3 ASP B 171 ASN B 175 5 5 HELIX 13 AB4 LEU B 180 TYR B 187 5 8 HELIX 14 AB5 LEU C 43 GLN C 48 1 6 HELIX 15 AB6 SER C 64 MET C 67 5 4 HELIX 16 AB7 PRO C 93 THR C 96 5 4 HELIX 17 AB8 THR C 97 TYR C 105 1 9 HELIX 18 AB9 SER C 143 GLY C 150 1 8 SHEET 1 AA1 4 GLY A 78 THR A 87 0 SHEET 2 AA1 4 SER A 238 PRO A 256 -1 O CYS A 242 N ILE A 83 SHEET 3 AA1 4 PHE A 121 ALA A 137 -1 N ALA A 135 O VAL A 241 SHEET 4 AA1 4 TYR A 198 TYR A 199 -1 O TYR A 198 N THR A 124 SHEET 1 AA2 4 ARG A 186 ILE A 189 0 SHEET 2 AA2 4 PHE A 121 ALA A 137 -1 N ILE A 130 O PHE A 187 SHEET 3 AA2 4 SER A 238 PRO A 256 -1 O VAL A 241 N ALA A 135 SHEET 4 AA2 4 GLN C 39 VAL C 40 -1 O VAL C 40 N ALA A 253 SHEET 1 AA3 4 PHE A 101 LYS A 105 0 SHEET 2 AA3 4 THR A 224 ILE A 229 -1 O VAL A 227 N LYS A 102 SHEET 3 AA3 4 VAL A 147 VAL A 153 -1 N MET A 151 O CYS A 226 SHEET 4 AA3 4 ALA A 174 GLN A 179 -1 O ALA A 174 N TYR A 152 SHEET 1 AA4 2 GLN B 15 ARG B 18 0 SHEET 2 AA4 2 SER B 21 THR B 24 -1 O ILE B 23 N ILE B 16 SHEET 1 AA5 5 VAL B 32 VAL B 33 0 SHEET 2 AA5 5 SER B 199 LEU B 204 1 O ILE B 203 N VAL B 32 SHEET 3 AA5 5 HIS B 99 CYS B 112 -1 N TYR B 106 O LEU B 204 SHEET 4 AA5 5 ILE B 241 PRO B 257 -1 O THR B 244 N GLN B 111 SHEET 5 AA5 5 TYR B 64 THR B 65 -1 N TYR B 64 O ILE B 247 SHEET 1 AA6 5 VAL B 32 VAL B 33 0 SHEET 2 AA6 5 SER B 199 LEU B 204 1 O ILE B 203 N VAL B 32 SHEET 3 AA6 5 HIS B 99 CYS B 112 -1 N TYR B 106 O LEU B 204 SHEET 4 AA6 5 ILE B 241 PRO B 257 -1 O THR B 244 N GLN B 111 SHEET 5 AA6 5 ARG B 69 TRP B 71 -1 N TRP B 71 O ILE B 241 SHEET 1 AA7 5 ARG B 154 GLU B 155 0 SHEET 2 AA7 5 TRP B 78 LEU B 82 -1 N TRP B 79 O ARG B 154 SHEET 3 AA7 5 TRP B 221 GLN B 232 -1 O TRP B 221 N LEU B 82 SHEET 4 AA7 5 GLN B 119 PRO B 128 -1 N ALA B 125 O VAL B 224 SHEET 5 AA7 5 HIS B 189 ASN B 193 -1 O GLN B 190 N VAL B 124 SHEET 1 AA8 3 THR C 51 LEU C 52 0 SHEET 2 AA8 3 ASN C 206 ALA C 215 -1 O VAL C 213 N THR C 51 SHEET 3 AA8 3 THR C 69 ARG C 73 -1 N LEU C 72 O ALA C 207 SHEET 1 AA9 4 THR C 51 LEU C 52 0 SHEET 2 AA9 4 ASN C 206 ALA C 215 -1 O VAL C 213 N THR C 51 SHEET 3 AA9 4 LEU C 113 PHE C 119 -1 N ARG C 114 O SER C 214 SHEET 4 AA9 4 THR C 162 VAL C 167 -1 O LEU C 165 N PHE C 115 SHEET 1 AB1 4 PHE C 83 PRO C 86 0 SHEET 2 AB1 4 TYR C 188 TYR C 193 -1 O ILE C 189 N ILE C 85 SHEET 3 AB1 4 LYS C 128 THR C 134 -1 N ALA C 132 O THR C 190 SHEET 4 AB1 4 THR C 151 ASP C 156 -1 O TRP C 155 N LEU C 129 SHEET 1 AB2 3 ARG C 176 PHE C 177 0 SHEET 2 AB2 3 TYR C 106 THR C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB2 3 CYS C 220 ALA C 224 -1 O CYS C 220 N THR C 110 CISPEP 1 LEU B 82 PRO B 83 0 10.94 CISPEP 2 GLN C 92 PRO C 93 0 2.63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 3045 PRO A 274 TER 6574 SER B 259 TER 10039 THR C 231 MASTER 397 0 0 18 43 0 0 6 5091 3 0 54 END