HEADER HYDROLASE 03-JUL-24 9FYM TITLE LACTO-N-BIOSIDASE FROM TREPONEMA DENTICOLA ATCC 35405 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 20 CATALYTIC DOMAIN-CONTAINING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SIGNAL PEPTIDE HAS BEEN REMOVED, ADDITIONAL GS (FROM COMPND 7 THROMBIN CLEAVAGE). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA DENTICOLA ATCC 35405; SOURCE 3 ORGANISM_TAXID: 243275; SOURCE 4 ATCC: 35405; SOURCE 5 GENE: TDE_1723; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B(+) KEYWDS LACTO-N-BIOSIDASE, GH20, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VUILLEMIN,S.SIEBENHAAR,B.ZEUNER,J.P.MORTH REVDAT 1 09-OCT-24 9FYM 0 JRNL AUTH M.VUILLEMIN,J.MUSCHIOL,Y.ZHANG,J.HOLCK,K.BARRETT,J.P.MORTH, JRNL AUTH 2 A.S.MEYER,B.ZEUNER JRNL TITL DISCOVERY OF LACTO-N-BIOSIDASES AND A NOVEL JRNL TITL 2 N-ACETYLLACTOSAMINIDASE ACTIVITY IN THE CAZY FAMILY GH20: JRNL TITL 3 FUNCTIONAL DIVERSITY AND STRUCTURAL INSIGHTS. JRNL REF CHEMBIOCHEM 00710 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 39239753 JRNL DOI 10.1002/CBIC.202400710 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 73688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 7353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1500 - 4.1700 0.99 4660 246 0.1542 0.1959 REMARK 3 2 4.1700 - 3.3100 1.00 4703 242 0.1339 0.1640 REMARK 3 3 3.3100 - 2.8900 1.00 4678 243 0.1469 0.1785 REMARK 3 4 2.8900 - 2.6300 1.00 4650 270 0.1531 0.1833 REMARK 3 5 2.6300 - 2.4400 1.00 4702 238 0.1446 0.1520 REMARK 3 6 2.4400 - 2.3000 1.00 4668 240 0.1454 0.1657 REMARK 3 7 2.3000 - 2.1800 1.00 4674 267 0.1426 0.1694 REMARK 3 8 2.1800 - 2.0900 1.00 4690 218 0.1499 0.1681 REMARK 3 9 2.0900 - 2.0100 1.00 4723 213 0.1515 0.1710 REMARK 3 10 2.0100 - 1.9400 1.00 4692 246 0.1580 0.1994 REMARK 3 11 1.9400 - 1.8800 1.00 4709 247 0.1658 0.2157 REMARK 3 12 1.8800 - 1.8200 1.00 4653 249 0.1734 0.2112 REMARK 3 13 1.8200 - 1.7700 1.00 4728 237 0.1797 0.2068 REMARK 3 14 1.7700 - 1.7300 1.00 4685 237 0.1926 0.2347 REMARK 3 15 1.7300 - 1.6900 1.00 4606 250 0.1923 0.2427 REMARK 3 16 1.6900 - 1.6600 1.00 4779 209 0.2056 0.2381 REMARK 3 17 1.6600 - 1.6200 1.00 4665 253 0.2056 0.2285 REMARK 3 18 1.6200 - 1.5900 1.00 4658 241 0.2103 0.2348 REMARK 3 19 1.5900 - 1.5600 1.00 4603 312 0.2228 0.2404 REMARK 3 20 1.5600 - 1.5400 1.00 4650 273 0.2307 0.2329 REMARK 3 21 1.5400 - 1.5100 1.00 4627 273 0.2425 0.2567 REMARK 3 22 1.5100 - 1.4900 1.00 4724 212 0.2551 0.2625 REMARK 3 23 1.4900 - 1.4700 1.00 4703 223 0.2711 0.2693 REMARK 3 24 1.4700 - 1.4500 0.99 4716 223 0.2885 0.2775 REMARK 3 25 1.4500 - 1.4300 1.00 4609 265 0.3008 0.3261 REMARK 3 26 1.4300 - 1.4100 0.99 4715 221 0.3170 0.3113 REMARK 3 27 1.4100 - 1.3900 0.99 4672 244 0.3321 0.3515 REMARK 3 28 1.3900 - 1.3700 0.99 4544 225 0.3362 0.3186 REMARK 3 29 1.3700 - 1.3600 0.98 4712 266 0.3567 0.3800 REMARK 3 30 1.3600 - 1.3400 0.96 4426 270 0.3741 0.3929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2778 REMARK 3 ANGLE : 1.270 3772 REMARK 3 CHIRALITY : 0.091 403 REMARK 3 PLANARITY : 0.013 488 REMARK 3 DIHEDRAL : 6.031 380 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292137423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77556 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 48.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08324 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8000, 9% ETHYLENE GLYCOL, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.97700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.82800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.35050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.82800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.97700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.35050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 GLN A 29 REMARK 465 THR A 30 REMARK 465 ASN A 31 REMARK 465 GLY A 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 SER A 252 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 106 O HOH A 504 1.49 REMARK 500 O HOH A 564 O HOH A 745 1.81 REMARK 500 O HOH A 711 O HOH A 727 1.84 REMARK 500 OE2 GLU A 242 O HOH A 501 1.92 REMARK 500 O HOH A 850 O HOH A 852 1.94 REMARK 500 O HOH A 665 O HOH A 679 2.01 REMARK 500 O HOH A 505 O HOH A 798 2.02 REMARK 500 O HOH A 612 O HOH A 771 2.02 REMARK 500 O HOH A 614 O HOH A 724 2.09 REMARK 500 O HOH A 785 O HOH A 833 2.10 REMARK 500 O HOH A 532 O HOH A 537 2.13 REMARK 500 OE1 GLU A 74 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 613 O HOH A 760 3654 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 139 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 119 -44.30 -153.61 REMARK 500 GLU A 125 -131.29 51.39 REMARK 500 SER A 253 -172.99 96.43 REMARK 500 PHE A 299 -106.25 -143.36 REMARK 500 TRP A 329 -71.13 -44.06 REMARK 500 TRP A 329 -71.13 -42.63 REMARK 500 TRP A 329 -71.13 -41.66 REMARK 500 ASN A 334 -0.39 75.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 47 O REMARK 620 2 GLU A 74 O 70.9 REMARK 620 3 GLU A 74 OE1 129.2 59.8 REMARK 620 4 HOH A 786 O 114.0 124.8 86.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 121 ND1 REMARK 620 2 CYS A 153 SG 116.6 REMARK 620 3 GLU A 189 OE1 121.8 111.0 REMARK 620 4 IMD A 401 N3 115.8 101.6 83.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 140 OE1 REMARK 620 2 CYS A 157 SG 109.5 REMARK 620 3 CYS A 198 SG 108.6 107.4 REMARK 620 4 CYS A 201 SG 111.4 104.7 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 177 O REMARK 620 2 SER A 179 OG 113.8 REMARK 620 3 HOH A 655 O 124.4 115.1 REMARK 620 N 1 2 DBREF 9FYM A 29 354 UNP Q73LY9 Q73LY9_TREDE 29 354 SEQADV 9FYM GLY A 25 UNP Q73LY9 EXPRESSION TAG SEQADV 9FYM SER A 26 UNP Q73LY9 EXPRESSION TAG SEQADV 9FYM HIS A 27 UNP Q73LY9 EXPRESSION TAG SEQADV 9FYM MET A 28 UNP Q73LY9 EXPRESSION TAG SEQRES 1 A 330 GLY SER HIS MET GLN THR ASN GLY THR MET PRO LYS ARG SEQRES 2 A 330 LYS PHE VAL ILE ALA PHE HIS ALA SER VAL ASN THR ASP SEQRES 3 A 330 LYS THR GLY LYS ASN LEU ILE LYS GLU LEU PRO ASP LEU SEQRES 4 A 330 GLN LYS ARG GLY ILE ASN THR LEU PHE LEU GLU ILE GLY SEQRES 5 A 330 TYR ASN TYR GLN TRP LYS SER ASP PRO LYS LEU TYR ASN SEQRES 6 A 330 LYS TYR VAL LEU SER GLU THR VAL ALA ARG GLU ILE ALA SEQRES 7 A 330 ALA GLU CYS ARG ARG LEU SER ILE ASP LEU ILE PRO GLU SEQRES 8 A 330 ILE ASN CYS LEU GLY HIS GLN SER TRP GLU ASN GLU THR SEQRES 9 A 330 PHE ALA LEU LEU LYS ALA TYR PRO GLU LEU ASP GLU THR SEQRES 10 A 330 PRO GLY LEU TYR PRO SER ASN LYS ASP ILE TYR CYS ARG SEQRES 11 A 330 SER LEU CYS SER SER ASN GLU LYS VAL TYR THR ILE LEU SEQRES 12 A 330 PHE GLY LEU ILE ASP GLU ILE THR GLU VAL PHE SER VAL SEQRES 13 A 330 LYS LYS ILE HIS VAL GLY LEU ASP GLU VAL PHE LEU ILE SEQRES 14 A 330 GLY GLU ASP ALA CYS PRO LEU CYS ARG GLY LYS ASP LYS SEQRES 15 A 330 ALA GLU LEU PHE ALA GLY ALA VAL ASN ARG LEU TYR ASP SEQRES 16 A 330 HIS CYS VAL LYS LYS ARG GLY PHE THR MET TYR MET TRP SEQRES 17 A 330 GLY ASP ARG LEU ILE ASP SER GLU ASP GLU ASP SER GLY SEQRES 18 A 330 TYR LYS GLY GLU TYR GLU SER SER CYS ASN GLY THR TYR SEQRES 19 A 330 PRO ALA VAL ASP LEU ILE PRO LYS ASP ILE ILE ILE CYS SEQRES 20 A 330 ASP TRP HIS TYR ASP GLU LEU GLU ARG TYR GLY SER ILE SEQRES 21 A 330 PRO TYR PHE LEU ASN LYS GLY PHE ARG VAL LEU PRO THR SEQRES 22 A 330 SER PHE LYS GLY ILE LYS ALA VAL ASN ALA LEU ILE ASP SEQRES 23 A 330 TYR SER LEU LEU TYR LYS ASP ASN PRO ALA MET LEU GLY SEQRES 24 A 330 HIS MET TYR THR ALA TRP ASP ASN PHE THR ASN LYS ASN SEQRES 25 A 330 LEU SER ARG TYR LYS PRO MET VAL LYS THR ILE ASP LYS SEQRES 26 A 330 LEU LYS ALA GLY ASN HET IMD A 401 7 HET NA A 402 1 HET NA A 403 1 HET ZN A 404 1 HET ZN A 405 1 HETNAM IMD IMIDAZOLE HETNAM NA SODIUM ION HETNAM ZN ZINC ION FORMUL 2 IMD C3 H5 N2 1+ FORMUL 3 NA 2(NA 1+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *352(H2 O) HELIX 1 AA1 THR A 49 GLY A 67 1 19 HELIX 2 AA2 ASP A 84 TYR A 88 5 5 HELIX 3 AA3 SER A 94 SER A 109 1 16 HELIX 4 AA4 PHE A 129 TYR A 135 1 7 HELIX 5 AA5 PRO A 136 ASP A 139 5 4 HELIX 6 AA6 TYR A 145 LYS A 149 5 5 HELIX 7 AA7 ASN A 160 SER A 179 1 20 HELIX 8 AA8 ASP A 205 VAL A 222 1 18 HELIX 9 AA9 ASP A 234 ILE A 237 5 4 HELIX 10 AB1 THR A 257 LEU A 263 5 7 HELIX 11 AB2 GLY A 282 LYS A 290 1 9 HELIX 12 AB3 GLY A 301 LEU A 314 1 14 HELIX 13 AB4 ASN A 336 ARG A 339 5 4 HELIX 14 AB5 TYR A 340 LYS A 345 1 6 HELIX 15 AB6 ILE A 347 ALA A 352 1 6 SHEET 1 AA1 4 ASP A 111 GLU A 115 0 SHEET 2 AA1 4 THR A 70 GLU A 74 1 N LEU A 71 O ASP A 111 SHEET 3 AA1 4 VAL A 40 SER A 46 1 N ALA A 45 O GLU A 74 SHEET 4 AA1 4 GLY A 323 THR A 327 1 O HIS A 324 N ALA A 42 SHEET 1 AA2 2 SER A 123 TRP A 124 0 SHEET 2 AA2 2 GLU A 127 THR A 128 -1 O GLU A 127 N TRP A 124 SHEET 1 AA3 4 LYS A 182 HIS A 184 0 SHEET 2 AA3 4 THR A 228 TRP A 232 1 O TYR A 230 N ILE A 183 SHEET 3 AA3 4 ILE A 269 TRP A 273 1 O CYS A 271 N MET A 231 SHEET 4 AA3 4 ARG A 293 THR A 297 1 O LEU A 295 N ILE A 270 LINK O VAL A 47 NA NA A 403 1555 1555 3.03 LINK O BGLU A 74 NA NA A 403 1555 1555 2.84 LINK OE1BGLU A 74 NA NA A 403 1555 1555 2.75 LINK ND1 HIS A 121 ZN ZN A 405 1555 1555 2.30 LINK OE1 GLU A 140 ZN ZN A 404 1555 1555 1.98 LINK SG CYS A 153 ZN ZN A 405 1555 1555 2.39 LINK SG CYS A 157 ZN ZN A 404 1555 1555 2.34 LINK O VAL A 177 NA NA A 402 1555 1555 2.58 LINK OG SER A 179 NA NA A 402 1555 1555 2.66 LINK OE1 GLU A 189 ZN ZN A 405 1555 1555 2.13 LINK SG CYS A 198 ZN ZN A 404 1555 1555 2.34 LINK SG CYS A 201 ZN ZN A 404 1555 1555 2.33 LINK N3 IMD A 401 ZN ZN A 405 1555 1555 2.54 LINK NA NA A 402 O HOH A 655 1555 1555 2.79 LINK NA NA A 403 O HOH A 786 1555 1555 2.82 CRYST1 43.954 50.701 153.656 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006508 0.00000