HEADER HYDROLASE 03-JUL-24 9FYN TITLE LACTO-N-BIOSIDASE FROM TRUEPERELLA PYOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTO-N-BIOSIDASE GH20; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.140; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TRUNCATED PROTEIN 294-1043 + HISTAG, LINKER AND INTACT COMPND 7 THROMBIN CLEAVAGE SITE AT THE N-TERMINUS OF THE PROTEIN (FROM COMPND 8 VECTOR). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRUEPERELLA PYOGENES; SOURCE 3 ORGANISM_TAXID: 1661; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28B(+) KEYWDS LACTO-N-BIOSIDASE, GH20, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VUILLEMIN,S.SIEBENHAAR,B.ZEUNER,J.P.MORTH REVDAT 1 09-OCT-24 9FYN 0 JRNL AUTH M.VUILLEMIN,J.MUSCHIOL,Y.ZHANG,J.HOLCK,K.BARRETT,J.P.MORTH, JRNL AUTH 2 A.S.MEYER,B.ZEUNER JRNL TITL DISCOVERY OF LACTO-N-BIOSIDASES AND A NOVEL JRNL TITL 2 N-ACETYLLACTOSAMINIDASE ACTIVITY IN THE CAZY FAMILY GH20: JRNL TITL 3 FUNCTIONAL DIVERSITY AND STRUCTURAL INSIGHTS. JRNL REF CHEMBIOCHEM 00710 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 39239753 JRNL DOI 10.1002/CBIC.202400710 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 71639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.640 REMARK 3 FREE R VALUE TEST SET COUNT : 3778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8800 - 5.3700 1.00 5222 152 0.1649 0.2101 REMARK 3 2 5.3700 - 4.2600 1.00 5232 148 0.1419 0.1556 REMARK 3 3 4.2600 - 3.7200 1.00 5240 144 0.1639 0.1907 REMARK 3 4 3.7200 - 3.3800 1.00 5287 160 0.1916 0.1949 REMARK 3 5 3.3800 - 3.1400 1.00 5219 140 0.2046 0.2947 REMARK 3 6 3.1400 - 2.9600 1.00 5232 150 0.2168 0.3117 REMARK 3 7 2.9500 - 2.8100 1.00 5235 158 0.2215 0.3108 REMARK 3 8 2.8100 - 2.6800 1.00 5214 119 0.2381 0.2734 REMARK 3 9 2.6800 - 2.5800 1.00 5324 131 0.2328 0.2511 REMARK 3 10 2.5800 - 2.4900 1.00 5213 172 0.2248 0.2623 REMARK 3 11 2.4900 - 2.4100 1.00 5201 126 0.2340 0.2812 REMARK 3 12 2.4100 - 2.3500 1.00 5252 148 0.2321 0.2240 REMARK 3 13 2.3500 - 2.2800 1.00 5192 136 0.2381 0.3214 REMARK 3 14 2.2800 - 2.2300 1.00 5255 158 0.2514 0.3534 REMARK 3 15 2.2300 - 2.1800 1.00 5226 152 0.2673 0.3037 REMARK 3 16 2.1800 - 2.1300 1.00 5251 115 0.2879 0.3375 REMARK 3 17 2.1300 - 2.0900 1.00 5310 155 0.2887 0.3338 REMARK 3 18 2.0900 - 2.0500 1.00 5264 138 0.3029 0.3260 REMARK 3 19 2.0500 - 2.0100 1.00 5168 138 0.3081 0.3940 REMARK 3 20 2.0100 - 1.9800 1.00 5193 144 0.3244 0.3549 REMARK 3 21 1.9800 - 1.9500 1.00 5278 126 0.3492 0.4051 REMARK 3 22 1.9500 - 1.9200 1.00 5220 152 0.3659 0.4237 REMARK 3 23 1.9200 - 1.8900 0.99 5151 124 0.3845 0.4304 REMARK 3 24 1.8900 - 1.8600 0.97 5184 121 0.4114 0.4043 REMARK 3 25 1.8600 - 1.8400 0.95 4916 115 0.4192 0.4247 REMARK 3 26 1.8400 - 1.8100 0.88 4606 143 0.4407 0.4109 REMARK 3 27 1.8100 - 1.7900 0.84 4415 113 0.4433 0.4465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.352 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.389 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6012 REMARK 3 ANGLE : 0.641 8167 REMARK 3 CHIRALITY : 0.047 899 REMARK 3 PLANARITY : 0.009 1064 REMARK 3 DIHEDRAL : 5.562 815 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 624 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5412 -54.9238 1.2714 REMARK 3 T TENSOR REMARK 3 T11: 0.4051 T22: 0.4469 REMARK 3 T33: 0.3548 T12: -0.0749 REMARK 3 T13: 0.0091 T23: -0.1121 REMARK 3 L TENSOR REMARK 3 L11: 2.0888 L22: 1.2408 REMARK 3 L33: 2.0281 L12: -0.0468 REMARK 3 L13: -1.3514 L23: 0.2482 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.2202 S13: -0.2040 REMARK 3 S21: 0.0680 S22: -0.1630 S23: 0.4115 REMARK 3 S31: 0.1506 S32: -0.4950 S33: 0.1822 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 625 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4599 -36.6454 5.5705 REMARK 3 T TENSOR REMARK 3 T11: 0.4501 T22: 0.3965 REMARK 3 T33: 0.3537 T12: 0.0601 REMARK 3 T13: 0.0799 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 1.7659 L22: 1.7016 REMARK 3 L33: 1.8747 L12: -0.3281 REMARK 3 L13: -0.9205 L23: 0.4057 REMARK 3 S TENSOR REMARK 3 S11: 0.3245 S12: 0.1601 S13: 0.2750 REMARK 3 S21: -0.0703 S22: -0.2432 S23: 0.3644 REMARK 3 S31: -0.3162 S32: -0.3853 S33: -0.0583 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 932 THROUGH 1043 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9959 2.7833 1.8946 REMARK 3 T TENSOR REMARK 3 T11: 0.7459 T22: 1.4343 REMARK 3 T33: 0.6119 T12: 0.0060 REMARK 3 T13: 0.1504 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 1.0346 L22: 2.1170 REMARK 3 L33: 3.2523 L12: -0.2479 REMARK 3 L13: -0.6897 L23: -0.2001 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0221 S13: 0.0861 REMARK 3 S21: -0.1997 S22: 0.0887 S23: -0.3270 REMARK 3 S31: 0.1535 S32: 2.1460 S33: -0.1046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292137710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6888 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75789 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 41.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,01 M NICKEL II CHLORIDE HEXAHYDRATE, REMARK 280 0,1M TRIS PH8,5 AND 20% PEG 2000 MME, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.39400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.86450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.81400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.86450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.39400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.81400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 273 REMARK 465 GLY A 274 REMARK 465 SER A 275 REMARK 465 SER A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 SER A 283 REMARK 465 SER A 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1465 O HOH A 1499 2.01 REMARK 500 O HOH A 1390 O HOH A 1475 2.05 REMARK 500 O HOH A 1311 O HOH A 1498 2.08 REMARK 500 O GLY A 290 O HOH A 1201 2.09 REMARK 500 O HOH A 1419 O HOH A 1493 2.16 REMARK 500 O HOH A 1427 O HOH A 1442 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1256 O HOH A 1430 3555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 340 13.58 -141.04 REMARK 500 GLN A 426 -59.33 66.82 REMARK 500 ASN A 464 42.48 -81.22 REMARK 500 ASN A 518 115.24 -165.28 REMARK 500 ALA A 519 -9.38 -58.81 REMARK 500 ALA A 560 -159.35 -84.22 REMARK 500 ARG A 616 -71.20 -132.61 REMARK 500 ASP A 623 42.47 -99.88 REMARK 500 ASP A 708 -40.24 67.50 REMARK 500 ARG A 752 -60.44 -125.85 REMARK 500 ASN A 796 79.86 58.66 REMARK 500 HIS A 807 36.02 77.84 REMARK 500 THR A 903 -36.88 -130.65 REMARK 500 LYS A 972 78.99 -107.27 REMARK 500 GLU A1015 -93.00 -106.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 418 GLY A 419 -146.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 758 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 497 NE2 REMARK 620 2 HOH A1465 O 92.3 REMARK 620 3 HOH A1484 O 99.3 165.2 REMARK 620 4 HOH A1489 O 107.7 101.9 66.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1102 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 807 NE2 REMARK 620 2 HOH A1311 O 81.4 REMARK 620 3 HOH A1470 O 91.3 78.0 REMARK 620 4 HOH A1501 O 153.9 100.9 64.2 REMARK 620 N 1 2 3 DBREF 9FYN A 273 1043 PDB 9FYN 9FYN 273 1043 SEQRES 1 A 771 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 771 LEU VAL PRO ARG GLY SER HIS MET ILE PRO ALA LEU THR SEQRES 3 A 771 SER ASN PHE LYS ALA ALA GLU GLY SER TRP THR ALA THR SEQRES 4 A 771 GLN GLY ILE THR VAL VAL ARG PRO GLU LYS PHE ALA ALA SEQRES 5 A 771 SER ALA GLN LEU LEU VAL ASP GLU LEU ASN ALA TYR THR SEQRES 6 A 771 LYS GLY THR ALA ILE LYS GLY ALA THR ALA GLY THR GLY SEQRES 7 A 771 ILE GLU ILE VAL LEU ASP GLU ASN GLN LYS ALA ASP LEU SEQRES 8 A 771 GLY ALA GLU GLY TYR THR LEU THR ILE ALA GLU SER GLY SEQRES 9 A 771 VAL LYS ILE THR ALA ALA ALA GLN ARG GLY ALA PHE TRP SEQRES 10 A 771 GLY THR ARG THR LEU SER GLN MET LEU ARG GLN ASN LEU SEQRES 11 A 771 THR LEU PRO ALA GLY SER VAL THR ASP LYS PRO ALA TYR SEQRES 12 A 771 ALA GLU ARG GLY VAL THR LEU CYS ALA CYS GLN ILE ASN SEQRES 13 A 771 PHE SER THR GLU TRP ILE ASP ARG PHE LEU ASN GLU MET SEQRES 14 A 771 ALA ASP LEU LYS LEU ASN SER VAL LEU MET GLU MET LYS SEQRES 15 A 771 LEU LYS SER ASP LYS PHE PRO VAL ALA ASN THR PHE SER SEQRES 16 A 771 TYR TYR SER ARG ASP ASP VAL LYS LYS PHE VAL LYS LYS SEQRES 17 A 771 ALA GLU ALA TYR GLY ILE ASP VAL ILE PRO GLU ILE ASN SEQRES 18 A 771 SER PRO GLY HIS MET ASN ILE TRP LEU GLU ASN LEU PRO SEQRES 19 A 771 ASP PHE GLN LEU LYS ASP GLN SER GLY LYS GLY ASN ALA SEQRES 20 A 771 ASP ARG LEU ASP ILE THR ASN PRO GLU ALA ILE LYS PHE SEQRES 21 A 771 TYR LYS THR LEU ILE ASP GLU TYR ASP GLY VAL PHE SER SEQRES 22 A 771 THR LYS TYR TRP HIS MET GLY ALA ASP GLU TYR MET MET SEQRES 23 A 771 GLY ALA SER TYR TYR SER TYR PRO GLN LEU ALA LYS TYR SEQRES 24 A 771 ALA GLN GLN VAL THR GLY LYS ALA ASN ALA THR GLY ALA SEQRES 25 A 771 ASP ALA PHE THR TYR PHE ILE ASN ASP ILE ASN ASN TYR SEQRES 26 A 771 VAL LYS ALA LYS GLY LYS THR LEU ARG ILE TRP ASN ASP SEQRES 27 A 771 GLY ILE VAL SER THR ARG ALA VAL THR LEU ASP LYS ASP SEQRES 28 A 771 ILE VAL VAL GLU HIS TRP LEU GLY SER GLY ARG SER PRO SEQRES 29 A 771 ASN GLU LEU ALA ASN ASP GLY TYR LYS LEU VAL ASN ALA SEQRES 30 A 771 ASN LEU ASN LEU TYR PHE ALA ARG LEU SER PRO TYR PRO SEQRES 31 A 771 ILE GLN LYS ASN GLY PRO ALA PHE LEU TYR ASN ASP PRO SEQRES 32 A 771 SER PHE GLY VAL ASP VAL PHE GLN GLY PRO TYR SER ARG SEQRES 33 A 771 SER ILE LYS VAL LYS LYS ALA GLU ASN ILE LEU GLY ALA SEQRES 34 A 771 LYS LEU SER ILE TRP PRO ASP ASN GLY VAL LYS GLN THR SEQRES 35 A 771 GLU ASN GLU VAL GLU ALA ASP VAL TYR GLU ALA MET ARG SEQRES 36 A 771 TYR VAL ALA GLN ILE THR TRP GLY GLY GLY ASN PRO ALA SEQRES 37 A 771 ASP ASN PRO THR TYR ALA ASP PHE LYS GLU LYS ARG VAL SEQRES 38 A 771 ASP LYS VAL LYS ARG SER PRO MET TRP ASN ASN ILE ASN SEQRES 39 A 771 ARG LYS PRO LEU GLU ASP GLY VAL TYR THR ILE ALA GLN SEQRES 40 A 771 PRO ASP GLY LYS ASP LEU GLN LEU SER GLY ASN ALA SER SEQRES 41 A 771 LEU GLY GLY ASN ASP GLU TRP THR LEU THR SER THR PRO SEQRES 42 A 771 ASP HIS TYR TYR GLN LEU LYS ASN MET THR SER ASN GLU SEQRES 43 A 771 CYS LEU SER VAL VAL SER GLY TYR LYS HIS LEU SER THR SEQRES 44 A 771 VAL THR GLN VAL GLY ALA ARG PRO GLU ALA ARG PRO CYS SEQRES 45 A 771 VAL ASP VAL SER GLN THR PHE THR GLY ASN GLN THR GLY SEQRES 46 A 771 ASN VAL GLY TYR GLU GLU ARG ASN PRO GLN LYS TRP MET SEQRES 47 A 771 LEU LEU ASP ALA GLY ASP GLY LYS PHE LYS VAL VAL ASN SEQRES 48 A 771 ALA VAL THR LEU GLN ARG LEU ALA VAL ALA LYS GLY THR SEQRES 49 A 771 GLU GLU HIS ILE ASP PHE THR THR PHE ASN GLY VAL ALA SEQRES 50 A 771 LYS ASP THR LYS PRO ALA ALA GLY GLU ILE VAL GLN PHE SEQRES 51 A 771 PRO ASP ASP MET THR ASP ASP VAL TRP THR ILE LYS PRO SEQRES 52 A 771 SER THR ARG SER ILE SER ALA ILE ALA GLU ALA THR PRO SEQRES 53 A 771 LYS GLN ALA TYR ALA SER LYS ASP GLY SER GLY ALA SER SEQRES 54 A 771 THR ILE ASP VAL THR VAL ALA ASN ASN SER LYS GLU LYS SEQRES 55 A 771 VAL SER ASN VAL VAL VAL THR PRO PRO VAL LYS ARG GLY SEQRES 56 A 771 TRP HIS ILE ASP LYS GLU PRO LYS THR ILE ALA HIS ILE SEQRES 57 A 771 ALA PRO GLY GLU SER ALA LYS VAL SER PHE GLN VAL SER SEQRES 58 A 771 PRO GLU TRP TYR ARG GLY ASP ALA GLN PHE GLU PHE ILE SEQRES 59 A 771 VAL THR ALA GLY ASP GLU VAL THR LYS ALA SER ALA LYS SEQRES 60 A 771 VAL LYS ALA ILE HET NI A1101 1 HET NI A1102 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI 2(NI 2+) FORMUL 4 HOH *304(H2 O) HELIX 1 AA1 PRO A 319 LYS A 321 5 3 HELIX 2 AA2 PHE A 322 LYS A 338 1 17 HELIX 3 AA3 GLN A 359 GLY A 364 1 6 HELIX 4 AA4 ALA A 383 ASN A 401 1 19 HELIX 5 AA5 SER A 430 LEU A 444 1 15 HELIX 6 AA6 PHE A 460 ASN A 464 5 5 HELIX 7 AA7 SER A 470 GLY A 485 1 16 HELIX 8 AA8 MET A 498 GLU A 503 1 6 HELIX 9 AA9 LEU A 505 GLN A 509 5 5 HELIX 10 AB1 ASN A 526 GLY A 542 1 17 HELIX 11 AB2 SER A 561 SER A 564 5 4 HELIX 12 AB3 TYR A 565 GLY A 577 1 13 HELIX 13 AB4 THR A 582 ALA A 600 1 19 HELIX 14 AB5 ASP A 610 ILE A 612 5 3 HELIX 15 AB6 SER A 635 ASP A 642 1 8 HELIX 16 AB7 ASN A 650 ASN A 652 5 3 HELIX 17 AB8 TYR A 661 GLY A 667 1 7 HELIX 18 AB9 PRO A 668 ASN A 673 1 6 HELIX 19 AC1 PRO A 685 SER A 687 5 3 HELIX 20 AC2 LYS A 694 GLU A 696 5 3 HELIX 21 AC3 THR A 714 VAL A 722 1 9 HELIX 22 AC4 VAL A 722 GLY A 736 1 15 HELIX 23 AC5 THR A 744 ARG A 752 1 9 HELIX 24 AC6 GLY A 860 ASN A 865 1 6 HELIX 25 AC7 HIS A 899 PHE A 902 5 4 HELIX 26 AC8 PRO A 923 THR A 927 5 5 SHEET 1 AA1 7 LYS A 302 THR A 309 0 SHEET 2 AA1 7 THR A 403 ASP A 411 -1 O LEU A 404 N TRP A 308 SHEET 3 AA1 7 TYR A 368 ALA A 373 -1 N ILE A 372 O GLY A 407 SHEET 4 AA1 7 GLY A 376 ALA A 381 -1 O LYS A 378 N THR A 371 SHEET 5 AA1 7 GLY A 350 LEU A 355 1 N GLU A 352 O VAL A 377 SHEET 6 AA1 7 THR A 315 VAL A 317 1 N VAL A 317 O ILE A 351 SHEET 7 AA1 7 GLY A 344 ALA A 345 1 O ALA A 345 N VAL A 316 SHEET 1 AA210 TYR A 654 ALA A 656 0 SHEET 2 AA210 ILE A 698 TRP A 706 1 O TRP A 706 N PHE A 655 SHEET 3 AA210 LEU A 646 ASN A 648 1 N LEU A 646 O LEU A 699 SHEET 4 AA210 VAL A 625 HIS A 628 1 N HIS A 628 O VAL A 647 SHEET 5 AA210 THR A 604 TRP A 608 1 N ILE A 607 O GLU A 627 SHEET 6 AA210 TYR A 548 GLY A 552 1 N GLY A 552 O TRP A 608 SHEET 7 AA210 ASP A 487 SER A 494 1 N SER A 494 O MET A 551 SHEET 8 AA210 SER A 448 MET A 453 1 N MET A 451 O ILE A 489 SHEET 9 AA210 GLU A 417 ALA A 424 1 N LEU A 422 O LEU A 450 SHEET 10 AA210 ILE A 698 TRP A 706 1 O LEU A 699 N GLU A 417 SHEET 1 AA3 2 VAL A 681 GLN A 683 0 SHEET 2 AA3 2 SER A 689 LYS A 691 -1 O ILE A 690 N PHE A 682 SHEET 1 AA4 7 GLY A 773 ALA A 778 0 SHEET 2 AA4 7 TRP A 799 SER A 803 -1 O LEU A 801 N GLY A 773 SHEET 3 AA4 7 TYR A 809 ASN A 813 -1 O GLN A 810 N THR A 802 SHEET 4 AA4 7 LYS A 868 ASP A 873 -1 O TRP A 869 N TYR A 809 SHEET 5 AA4 7 LYS A 878 ASN A 883 -1 O VAL A 882 N MET A 870 SHEET 6 AA4 7 TRP A 931 PRO A 935 -1 O TRP A 931 N PHE A 879 SHEET 7 AA4 7 GLY A 773 ALA A 778 -1 N THR A 776 O LYS A 934 SHEET 1 AA5 2 LEU A 785 LEU A 787 0 SHEET 2 AA5 2 ALA A 791 LEU A 793 -1 O SER A 792 N GLN A 786 SHEET 1 AA6 2 CYS A 819 SER A 821 0 SHEET 2 AA6 2 GLU A 840 ARG A 842 -1 O ARG A 842 N CYS A 819 SHEET 1 AA7 2 LYS A 827 HIS A 828 0 SHEET 2 AA7 2 THR A 831 VAL A 832 -1 O THR A 831 N HIS A 828 SHEET 1 AA8 2 ARG A 889 VAL A 892 0 SHEET 2 AA8 2 ILE A 919 PHE A 922 -1 O PHE A 922 N ARG A 889 SHEET 1 AA9 2 THR A 904 PHE A 905 0 SHEET 2 AA9 2 VAL A 908 ALA A 909 -1 O VAL A 908 N PHE A 905 SHEET 1 AB1 4 ILE A 940 THR A 947 0 SHEET 2 AB1 4 SER A 961 ASN A 969 -1 O THR A 966 N ILE A 943 SHEET 3 AB1 4 SER A1005 PRO A1014 -1 O VAL A1008 N VAL A 965 SHEET 4 AB1 4 TRP A 988 ILE A 990 -1 N HIS A 989 O SER A1013 SHEET 1 AB2 5 GLN A 950 TYR A 952 0 SHEET 2 AB2 5 GLU A1032 ILE A1043 1 O LYS A1041 N ALA A 951 SHEET 3 AB2 5 GLY A1019 ALA A1029 -1 N GLY A1019 O ALA A1042 SHEET 4 AB2 5 VAL A 975 THR A 981 -1 N THR A 981 O ILE A1026 SHEET 5 AB2 5 LYS A 995 ILE A1000 -1 O LYS A 995 N VAL A 980 SSBOND 1 CYS A 423 CYS A 425 1555 1555 2.04 SSBOND 2 CYS A 819 CYS A 844 1555 1555 2.03 LINK NE2 HIS A 497 NI NI A1101 1555 1555 2.00 LINK NE2 HIS A 807 NI NI A1102 1555 1555 2.04 LINK NI NI A1101 O HOH A1465 1555 1555 2.29 LINK NI NI A1101 O HOH A1484 1555 1555 2.37 LINK NI NI A1101 O HOH A1489 1555 1555 2.47 LINK NI NI A1102 O HOH A1311 1555 1555 2.14 LINK NI NI A1102 O HOH A1470 1555 1555 2.36 LINK NI NI A1102 O HOH A1501 1555 1555 2.20 CISPEP 1 VAL A 287 PRO A 288 0 -11.26 CISPEP 2 ILE A 294 PRO A 295 0 -2.96 CISPEP 3 PHE A 466 SER A 467 0 4.29 CISPEP 4 SER A 494 PRO A 495 0 -4.17 CISPEP 5 THR A 947 PRO A 948 0 -2.97 CRYST1 90.788 93.628 93.729 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010669 0.00000