HEADER HYDROLASE 03-JUL-24 9FYO TITLE LACTO-N-BIOSIDASE FROM TRUEPERELLA PYOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRPYGH20; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.140; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TRUNCATED PROTEIN 294-1043 ADDITIONAL AA FROM VECTOR COMPND 7 AT THE N-TERMINUS OF THE PROTEIN (LINKER, HISTAG AND INTACT THROMBIN COMPND 8 CLEAVAGE SITE) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRUEPERELLA PYOGENES; SOURCE 3 ORGANISM_TAXID: 1661; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28B(+) KEYWDS LACTO-N-BIOSIDASE, GH20, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VUILLEMIN,S.SIEBENHAAR,B.ZEUNER,J.P.MORTH REVDAT 1 09-OCT-24 9FYO 0 JRNL AUTH M.VUILLEMIN,J.MUSCHIOL,Y.ZHANG,J.HOLCK,K.BARRETT,J.P.MORTH, JRNL AUTH 2 A.S.MEYER,B.ZEUNER JRNL TITL DISCOVERY OF LACTO-N-BIOSIDASES AND A NOVEL JRNL TITL 2 N-ACETYLLACTOSAMINIDASE ACTIVITY IN THE CAZY FAMILY GH20: JRNL TITL 3 FUNCTIONAL DIVERSITY AND STRUCTURAL INSIGHTS. JRNL REF CHEMBIOCHEM 00710 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 39239753 JRNL DOI 10.1002/CBIC.202400710 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 20733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.3000 - 5.5300 1.00 2675 100 0.1808 0.2379 REMARK 3 2 5.5300 - 4.3900 1.00 2535 140 0.1886 0.2005 REMARK 3 3 4.3900 - 3.8400 0.94 2332 147 0.2154 0.2779 REMARK 3 4 3.8400 - 3.4900 0.94 2278 173 0.2544 0.2661 REMARK 3 5 3.4900 - 3.2400 1.00 2471 133 0.3058 0.3487 REMARK 3 6 3.2400 - 3.0500 1.00 2432 141 0.3070 0.3166 REMARK 3 7 3.0500 - 2.8900 1.00 2473 131 0.3370 0.3733 REMARK 3 8 2.8900 - 2.7700 1.00 2454 118 0.4013 0.4195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.379 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.925 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6038 REMARK 3 ANGLE : 1.628 8203 REMARK 3 CHIRALITY : 0.086 909 REMARK 3 PLANARITY : 0.012 1065 REMARK 3 DIHEDRAL : 7.788 831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4745 23.3525 -30.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.6987 T22: 0.7227 REMARK 3 T33: 0.7215 T12: 0.0315 REMARK 3 T13: -0.0806 T23: 0.1132 REMARK 3 L TENSOR REMARK 3 L11: 1.2372 L22: 1.8488 REMARK 3 L33: 1.9004 L12: 1.0711 REMARK 3 L13: -0.1915 L23: -0.3598 REMARK 3 S TENSOR REMARK 3 S11: -0.1112 S12: 0.2452 S13: 0.2102 REMARK 3 S21: -0.2383 S22: 0.1833 S23: 0.4286 REMARK 3 S31: 0.0816 S32: -0.4725 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9355 17.1045 -15.3662 REMARK 3 T TENSOR REMARK 3 T11: 0.7117 T22: 0.7201 REMARK 3 T33: 0.6808 T12: -0.0231 REMARK 3 T13: 0.0147 T23: 0.1132 REMARK 3 L TENSOR REMARK 3 L11: 1.5684 L22: 1.6739 REMARK 3 L33: 1.8682 L12: 0.6661 REMARK 3 L13: -0.2789 L23: -0.1017 REMARK 3 S TENSOR REMARK 3 S11: 0.1663 S12: -0.1415 S13: 0.0368 REMARK 3 S21: 0.1557 S22: 0.0673 S23: 0.3561 REMARK 3 S31: 0.0319 S32: -0.4464 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 932 THROUGH 1043 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6740 21.1854 26.7294 REMARK 3 T TENSOR REMARK 3 T11: 1.0101 T22: 0.9779 REMARK 3 T33: 1.5401 T12: -0.0924 REMARK 3 T13: 0.0275 T23: -0.2036 REMARK 3 L TENSOR REMARK 3 L11: 0.2795 L22: 0.3614 REMARK 3 L33: 0.7342 L12: 0.1341 REMARK 3 L13: -0.1442 L23: 0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.1958 S12: -0.2551 S13: 0.3421 REMARK 3 S21: -0.3667 S22: 0.1783 S23: -1.7910 REMARK 3 S31: -0.1105 S32: 0.0623 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292137713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6888 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 65.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,01 M NICKEL II CHLORIDE HEXAHYDRATE, REMARK 280 0,1M TRIS PH8,5 AND 20% PEG 2000 MME, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.37950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.01850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.84300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.01850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.37950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.84300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 273 REMARK 465 GLY A 274 REMARK 465 SER A 275 REMARK 465 SER A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 SER A 283 REMARK 465 SER A 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 369 O HOH A 1201 1.46 REMARK 500 OD1 ASP A 585 H ALA A 617 1.56 REMARK 500 NI NI A 1102 O HOH A 1209 1.56 REMARK 500 O THR A 380 O HOH A 1201 1.93 REMARK 500 O THR A 369 O HOH A 1201 1.98 REMARK 500 N THR A 369 O HOH A 1201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 887 CG LEU A 887 CD1 0.253 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 435 CB - CG - OD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 LEU A 450 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 LYS A 480 CB - CG - CD ANGL. DEV. = -17.1 DEGREES REMARK 500 ASP A 541 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 541 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 LEU A 620 CB - CG - CD1 ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU A 620 CB - CG - CD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU A 658 CB - CG - CD1 ANGL. DEV. = 13.3 DEGREES REMARK 500 ILE A 690 CG1 - CB - CG2 ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU A 829 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU A 887 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 LEU A 887 CB - CG - CD1 ANGL. DEV. = -11.5 DEGREES REMARK 500 LEU A 887 CB - CG - CD2 ANGL. DEV. = 24.8 DEGREES REMARK 500 ILE A 919 CG1 - CB - CG2 ANGL. DEV. = -15.7 DEGREES REMARK 500 GLN A1011 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 VAL A1012 CG1 - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 340 14.00 -140.22 REMARK 500 GLN A 426 -60.21 66.73 REMARK 500 ASN A 464 43.21 -82.19 REMARK 500 ASN A 518 114.47 -165.66 REMARK 500 ALA A 519 -7.62 -58.31 REMARK 500 ALA A 560 -158.41 -84.11 REMARK 500 ARG A 616 -71.34 -131.95 REMARK 500 ASP A 623 41.53 -98.85 REMARK 500 ASP A 708 -40.14 67.76 REMARK 500 ARG A 752 -60.98 -126.09 REMARK 500 ASN A 796 78.21 58.04 REMARK 500 HIS A 807 35.18 77.27 REMARK 500 LYS A 972 78.19 -108.26 REMARK 500 GLU A 973 128.16 -170.18 REMARK 500 GLU A1015 -91.98 -105.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 418 GLY A 419 -147.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 758 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 474 -12.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1103 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 292 NE2 REMARK 620 2 HOH A1203 O 67.1 REMARK 620 3 HOH A1214 O 86.7 88.3 REMARK 620 4 HOH A1223 O 118.9 118.0 148.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1102 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 807 NE2 REMARK 620 2 HOH A1217 O 96.0 REMARK 620 3 HOH A1221 O 104.3 88.5 REMARK 620 N 1 2 DBREF 9FYO A 273 1043 PDB 9FYO 9FYO 273 1043 SEQRES 1 A 771 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 771 LEU VAL PRO ARG GLY SER HIS MET ILE PRO ALA LEU THR SEQRES 3 A 771 SER ASN PHE LYS ALA ALA GLU GLY SER TRP THR ALA THR SEQRES 4 A 771 GLN GLY ILE THR VAL VAL ARG PRO GLU LYS PHE ALA ALA SEQRES 5 A 771 SER ALA GLN LEU LEU VAL ASP GLU LEU ASN ALA TYR THR SEQRES 6 A 771 LYS GLY THR ALA ILE LYS GLY ALA THR ALA GLY THR GLY SEQRES 7 A 771 ILE GLU ILE VAL LEU ASP GLU ASN GLN LYS ALA ASP LEU SEQRES 8 A 771 GLY ALA GLU GLY TYR THR LEU THR ILE ALA GLU SER GLY SEQRES 9 A 771 VAL LYS ILE THR ALA ALA ALA GLN ARG GLY ALA PHE TRP SEQRES 10 A 771 GLY THR ARG THR LEU SER GLN MET LEU ARG GLN ASN LEU SEQRES 11 A 771 THR LEU PRO ALA GLY SER VAL THR ASP LYS PRO ALA TYR SEQRES 12 A 771 ALA GLU ARG GLY VAL THR LEU CYS ALA CYS GLN ILE ASN SEQRES 13 A 771 PHE SER THR GLU TRP ILE ASP ARG PHE LEU ASN GLU MET SEQRES 14 A 771 ALA ASP LEU LYS LEU ASN SER VAL LEU MET GLU MET LYS SEQRES 15 A 771 LEU LYS SER ASP LYS PHE PRO VAL ALA ASN THR PHE SER SEQRES 16 A 771 TYR TYR SER ARG ASP ASP VAL LYS LYS PHE VAL LYS LYS SEQRES 17 A 771 ALA GLU ALA TYR GLY ILE ASP VAL ILE PRO GLU ILE ASN SEQRES 18 A 771 SER PRO GLY HIS MET ASN ILE TRP LEU GLU ASN LEU PRO SEQRES 19 A 771 ASP PHE GLN LEU LYS ASP GLN SER GLY LYS GLY ASN ALA SEQRES 20 A 771 ASP ARG LEU ASP ILE THR ASN PRO GLU ALA ILE LYS PHE SEQRES 21 A 771 TYR LYS THR LEU ILE ASP GLU TYR ASP GLY VAL PHE SER SEQRES 22 A 771 THR LYS TYR TRP HIS MET GLY ALA ASP GLU TYR MET MET SEQRES 23 A 771 GLY ALA SER TYR TYR SER TYR PRO GLN LEU ALA LYS TYR SEQRES 24 A 771 ALA GLN GLN VAL THR GLY LYS ALA ASN ALA THR GLY ALA SEQRES 25 A 771 ASP ALA PHE THR TYR PHE ILE ASN ASP ILE ASN ASN TYR SEQRES 26 A 771 VAL LYS ALA LYS GLY LYS THR LEU ARG ILE TRP ASN ASP SEQRES 27 A 771 GLY ILE VAL SER THR ARG ALA VAL THR LEU ASP LYS ASP SEQRES 28 A 771 ILE VAL VAL GLU HIS TRP LEU GLY SER GLY ARG SER PRO SEQRES 29 A 771 ASN GLU LEU ALA ASN ASP GLY TYR LYS LEU VAL ASN ALA SEQRES 30 A 771 ASN LEU ASN LEU TYR PHE ALA ARG LEU SER PRO TYR PRO SEQRES 31 A 771 ILE GLN LYS ASN GLY PRO ALA PHE LEU TYR ASN ASP PRO SEQRES 32 A 771 SER PHE GLY VAL ASP VAL PHE GLN GLY PRO TYR SER ARG SEQRES 33 A 771 SER ILE LYS VAL LYS LYS ALA GLU ASN ILE LEU GLY ALA SEQRES 34 A 771 LYS LEU SER ILE TRP PRO ASP ASN GLY VAL LYS GLN THR SEQRES 35 A 771 GLU ASN GLU VAL GLU ALA ASP VAL TYR GLU ALA MET ARG SEQRES 36 A 771 TYR VAL ALA GLN ILE THR TRP GLY GLY GLY ASN PRO ALA SEQRES 37 A 771 ASP ASN PRO THR TYR ALA ASP PHE LYS GLU LYS ARG VAL SEQRES 38 A 771 ASP LYS VAL LYS ARG SER PRO MET TRP ASN ASN ILE ASN SEQRES 39 A 771 ARG LYS PRO LEU GLU ASP GLY VAL TYR THR ILE ALA GLN SEQRES 40 A 771 PRO ASP GLY LYS ASP LEU GLN LEU SER GLY ASN ALA SER SEQRES 41 A 771 LEU GLY GLY ASN ASP GLU TRP THR LEU THR SER THR PRO SEQRES 42 A 771 ASP HIS TYR TYR GLN LEU LYS ASN MET THR SER ASN GLU SEQRES 43 A 771 CYS LEU SER VAL VAL SER GLY TYR LYS HIS LEU SER THR SEQRES 44 A 771 VAL THR GLN VAL GLY ALA ARG PRO GLU ALA ARG PRO CYS SEQRES 45 A 771 VAL ASP VAL SER GLN THR PHE THR GLY ASN GLN THR GLY SEQRES 46 A 771 ASN VAL GLY TYR GLU GLU ARG ASN PRO GLN LYS TRP MET SEQRES 47 A 771 LEU LEU ASP ALA GLY ASP GLY LYS PHE LYS VAL VAL ASN SEQRES 48 A 771 ALA VAL THR LEU GLN ARG LEU ALA VAL ALA LYS GLY THR SEQRES 49 A 771 GLU GLU HIS ILE ASP PHE THR THR PHE ASN GLY VAL ALA SEQRES 50 A 771 LYS ASP THR LYS PRO ALA ALA GLY GLU ILE VAL GLN PHE SEQRES 51 A 771 PRO ASP ASP MET THR ASP ASP VAL TRP THR ILE LYS PRO SEQRES 52 A 771 SER THR ARG SER ILE SER ALA ILE ALA GLU ALA THR PRO SEQRES 53 A 771 LYS GLN ALA TYR ALA SER LYS ASP GLY SER GLY ALA SER SEQRES 54 A 771 THR ILE ASP VAL THR VAL ALA ASN ASN SER LYS GLU LYS SEQRES 55 A 771 VAL SER ASN VAL VAL VAL THR PRO PRO VAL LYS ARG GLY SEQRES 56 A 771 TRP HIS ILE ASP LYS GLU PRO LYS THR ILE ALA HIS ILE SEQRES 57 A 771 ALA PRO GLY GLU SER ALA LYS VAL SER PHE GLN VAL SER SEQRES 58 A 771 PRO GLU TRP TYR ARG GLY ASP ALA GLN PHE GLU PHE ILE SEQRES 59 A 771 VAL THR ALA GLY ASP GLU VAL THR LYS ALA SER ALA LYS SEQRES 60 A 771 VAL LYS ALA ILE HET NAG C 1 26 HET GAL C 2 21 HET NI A1101 1 HET NI A1102 1 HET NI A1103 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 NI 3(NI 2+) FORMUL 6 HOH *23(H2 O) HELIX 1 AA1 PRO A 319 LYS A 321 5 3 HELIX 2 AA2 PHE A 322 LYS A 338 1 17 HELIX 3 AA3 GLN A 359 GLY A 364 1 6 HELIX 4 AA4 ALA A 383 ARG A 399 1 17 HELIX 5 AA5 SER A 430 LEU A 444 1 15 HELIX 6 AA6 PHE A 460 ASN A 464 5 5 HELIX 7 AA7 SER A 470 GLY A 485 1 16 HELIX 8 AA8 MET A 498 GLU A 503 1 6 HELIX 9 AA9 LEU A 505 GLN A 509 5 5 HELIX 10 AB1 ASN A 526 GLY A 542 1 17 HELIX 11 AB2 SER A 561 SER A 564 5 4 HELIX 12 AB3 TYR A 565 GLY A 577 1 13 HELIX 13 AB4 THR A 582 ALA A 600 1 19 HELIX 14 AB5 ASP A 610 ILE A 612 5 3 HELIX 15 AB6 SER A 635 ASP A 642 1 8 HELIX 16 AB7 ASN A 650 ASN A 652 5 3 HELIX 17 AB8 TYR A 661 GLY A 667 1 7 HELIX 18 AB9 PRO A 668 ASN A 673 1 6 HELIX 19 AC1 PRO A 685 SER A 687 5 3 HELIX 20 AC2 LYS A 694 GLU A 696 5 3 HELIX 21 AC3 THR A 714 VAL A 722 1 9 HELIX 22 AC4 VAL A 722 GLY A 736 1 15 HELIX 23 AC5 THR A 744 ARG A 752 1 9 HELIX 24 AC6 GLY A 860 ASN A 865 1 6 HELIX 25 AC7 HIS A 899 PHE A 902 5 4 HELIX 26 AC8 PRO A 923 THR A 927 5 5 SHEET 1 AA1 7 LYS A 302 THR A 309 0 SHEET 2 AA1 7 THR A 403 ASP A 411 -1 O LEU A 404 N TRP A 308 SHEET 3 AA1 7 TYR A 368 ALA A 373 -1 N ILE A 372 O GLY A 407 SHEET 4 AA1 7 GLY A 376 ALA A 381 -1 O LYS A 378 N THR A 371 SHEET 5 AA1 7 GLY A 350 LEU A 355 1 N GLU A 352 O VAL A 377 SHEET 6 AA1 7 THR A 315 VAL A 317 1 N VAL A 317 O ILE A 351 SHEET 7 AA1 7 GLY A 344 ALA A 345 1 O ALA A 345 N VAL A 316 SHEET 1 AA210 TYR A 654 ALA A 656 0 SHEET 2 AA210 ILE A 698 TRP A 706 1 O TRP A 706 N PHE A 655 SHEET 3 AA210 LEU A 646 ASN A 648 1 N ASN A 648 O GLY A 700 SHEET 4 AA210 ILE A 624 HIS A 628 1 N HIS A 628 O VAL A 647 SHEET 5 AA210 THR A 604 TRP A 608 1 N ILE A 607 O GLU A 627 SHEET 6 AA210 TYR A 548 GLY A 552 1 N GLY A 552 O TRP A 608 SHEET 7 AA210 ASP A 487 SER A 494 1 N SER A 494 O MET A 551 SHEET 8 AA210 SER A 448 MET A 453 1 N VAL A 449 O ASP A 487 SHEET 9 AA210 GLU A 417 ALA A 424 1 N LEU A 422 O LEU A 450 SHEET 10 AA210 ILE A 698 TRP A 706 1 O LEU A 699 N GLU A 417 SHEET 1 AA3 2 VAL A 681 GLN A 683 0 SHEET 2 AA3 2 SER A 689 LYS A 691 -1 O ILE A 690 N PHE A 682 SHEET 1 AA4 7 GLY A 773 ALA A 778 0 SHEET 2 AA4 7 GLU A 798 SER A 803 -1 O TRP A 799 N TYR A 775 SHEET 3 AA4 7 TYR A 809 ASN A 813 -1 O GLN A 810 N THR A 802 SHEET 4 AA4 7 LYS A 868 ASP A 873 -1 O TRP A 869 N TYR A 809 SHEET 5 AA4 7 LYS A 878 ASN A 883 -1 O VAL A 882 N MET A 870 SHEET 6 AA4 7 TRP A 931 PRO A 935 -1 O TRP A 931 N PHE A 879 SHEET 7 AA4 7 GLY A 773 ALA A 778 -1 N THR A 776 O LYS A 934 SHEET 1 AA5 2 LEU A 785 LEU A 787 0 SHEET 2 AA5 2 ALA A 791 LEU A 793 -1 O SER A 792 N GLN A 786 SHEET 1 AA6 2 GLU A 818 SER A 821 0 SHEET 2 AA6 2 GLU A 840 PRO A 843 -1 O ARG A 842 N CYS A 819 SHEET 1 AA7 2 LYS A 827 HIS A 828 0 SHEET 2 AA7 2 THR A 831 VAL A 832 -1 O THR A 831 N HIS A 828 SHEET 1 AA8 2 ARG A 889 VAL A 892 0 SHEET 2 AA8 2 ILE A 919 PHE A 922 -1 O VAL A 920 N ALA A 891 SHEET 1 AA9 2 THR A 904 PHE A 905 0 SHEET 2 AA9 2 VAL A 908 ALA A 909 -1 O VAL A 908 N PHE A 905 SHEET 1 AB1 4 ILE A 940 THR A 947 0 SHEET 2 AB1 4 SER A 961 ASN A 969 -1 O ALA A 968 N SER A 941 SHEET 3 AB1 4 SER A1005 PRO A1014 -1 O VAL A1008 N VAL A 965 SHEET 4 AB1 4 TRP A 988 ILE A 990 -1 N HIS A 989 O SER A1013 SHEET 1 AB2 5 GLN A 950 TYR A 952 0 SHEET 2 AB2 5 GLU A1032 ILE A1043 1 O LYS A1041 N ALA A 951 SHEET 3 AB2 5 GLY A1019 ALA A1029 -1 N VAL A1027 O THR A1034 SHEET 4 AB2 5 VAL A 975 THR A 981 -1 N THR A 981 O ILE A1026 SHEET 5 AB2 5 LYS A 995 ILE A1000 -1 O LYS A 995 N VAL A 980 SSBOND 1 CYS A 423 CYS A 425 1555 1555 2.03 SSBOND 2 CYS A 819 CYS A 844 1555 1555 2.02 LINK O3 NAG C 1 C1 GAL C 2 1555 1555 1.44 LINK NE2 HIS A 292 NI NI A1103 1555 1555 2.02 LINK NE2 HIS A 497 NI NI A1101 1555 1555 2.04 LINK NE2 HIS A 807 NI NI A1102 1555 1555 2.02 LINK NI NI A1102 O HOH A1217 1555 1555 2.20 LINK NI NI A1102 O HOH A1221 1555 1555 2.45 LINK NI NI A1103 O HOH A1203 1555 1555 2.33 LINK NI NI A1103 O HOH A1214 1555 1555 2.37 LINK NI NI A1103 O HOH A1223 1555 1555 2.44 CISPEP 1 VAL A 287 PRO A 288 0 -13.63 CISPEP 2 ILE A 294 PRO A 295 0 -2.93 CISPEP 3 PHE A 466 SER A 467 0 3.81 CISPEP 4 SER A 494 PRO A 495 0 -4.33 CISPEP 5 THR A 947 PRO A 948 0 -3.02 CRYST1 90.759 93.686 94.037 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010634 0.00000