HEADER VIRUS 07-JUL-24 9G0B TITLE RHINOVIRUS A2 UNCOATING INTERMEDIATE REVEALING THE NATURAL POCKET TITLE 2 FACTOR (PH 5.8 AND 4 DEGREES CELSIUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAPSID PROTEIN VP2; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: P1B,VIRION PROTEIN 2; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CAPSID PROTEIN VP3; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: P1C,VIRION PROTEIN 3; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: CAPSID PROTEIN VP4; COMPND 15 CHAIN: D; COMPND 16 SYNONYM: P1A,VIRION PROTEIN 4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 3 ORGANISM_TAXID: 12130; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 6 ORGANISM_TAXID: 12130; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 9 ORGANISM_TAXID: 12130; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 12 ORGANISM_TAXID: 12130 KEYWDS UNCOATING INTERMEDIATE, POCKET FACTOR, LAURIC ACID, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR A.REAL-HOHN,D.BLAAS REVDAT 1 31-JUL-24 9G0B 0 JRNL AUTH A.REAL-HOHN,D.BLAAS JRNL TITL RHINOVIRUS A2 UNCOATING INTERMEDIATE REVEALING THE NATURAL JRNL TITL 2 POCKET FACTOR (PH 5.8 AND 4 DEGREES CELSIUS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 COOT, PHENIX, RELION, RELION, RELION, REMARK 3 RELION, COOT, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3VDD REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 9825 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9G0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139957. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RHINOVIRUS A2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 246 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 100000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309123 0.500018 -0.808965 224.51991 REMARK 350 BIOMT2 2 0.500018 -0.809019 -0.308983 363.28056 REMARK 350 BIOMT3 2 -0.808965 -0.308983 -0.500105 587.87561 REMARK 350 BIOMT1 3 0.000132 -0.000160 -1.000000 449.10656 REMARK 350 BIOMT2 3 -1.000000 0.000028 -0.000132 449.10718 REMARK 350 BIOMT3 3 0.000028 1.000000 -0.000160 0.04592 REMARK 350 BIOMT1 4 -0.309058 0.499927 -0.809047 363.37343 REMARK 350 BIOMT2 4 0.499982 0.809058 0.308939 -138.77169 REMARK 350 BIOMT3 4 0.809012 -0.309029 -0.500000 224.54034 REMARK 350 BIOMT1 5 -0.809017 0.308855 -0.500100 449.16906 REMARK 350 BIOMT2 5 -0.309109 0.500112 0.808913 0.01284 REMARK 350 BIOMT3 5 0.499943 0.809010 -0.309129 0.04955 REMARK 350 BIOMT1 6 0.499934 0.809074 -0.308974 0.00876 REMARK 350 BIOMT2 6 0.809026 -0.308951 0.500027 -0.04938 REMARK 350 BIOMT3 6 0.309101 -0.499948 -0.809017 449.05319 REMARK 350 BIOMT1 7 0.309205 -0.500038 -0.808922 449.03502 REMARK 350 BIOMT2 7 -0.500038 -0.809015 0.308960 449.08857 REMARK 350 BIOMT3 7 -0.808922 0.308960 -0.500189 449.13824 REMARK 350 BIOMT1 8 -0.308870 -0.500007 -0.809069 587.85184 REMARK 350 BIOMT2 8 0.499936 -0.809017 0.309120 224.50551 REMARK 350 BIOMT3 8 -0.809113 -0.309005 0.499852 363.37650 REMARK 350 BIOMT1 9 -0.500000 0.808943 -0.309212 224.63015 REMARK 350 BIOMT2 9 -0.809049 -0.308948 0.499991 363.30185 REMARK 350 BIOMT3 9 0.308934 0.500163 0.808948 -138.77381 REMARK 350 BIOMT1 10 0.808992 0.309069 -0.500009 85.77141 REMARK 350 BIOMT2 10 0.308990 0.500025 0.809012 -138.78606 REMARK 350 BIOMT3 10 0.500057 -0.808982 0.309017 224.50958 REMARK 350 BIOMT1 11 -0.000132 1.000000 -0.000110 0.07691 REMARK 350 BIOMT2 11 -0.000022 0.000110 1.000000 -0.03590 REMARK 350 BIOMT3 11 1.000000 0.000132 0.000022 -0.04111 REMARK 350 BIOMT1 12 0.809108 -0.308925 -0.499910 224.48178 REMARK 350 BIOMT2 12 0.308962 -0.500000 0.809038 85.75037 REMARK 350 BIOMT3 12 -0.499887 -0.809052 -0.309108 587.86440 REMARK 350 BIOMT1 13 -0.808901 -0.309137 -0.500113 587.90437 REMARK 350 BIOMT2 13 -0.309138 -0.499914 0.809024 224.53043 REMARK 350 BIOMT3 13 -0.500113 0.809024 0.308815 85.85481 REMARK 350 BIOMT1 14 -0.500000 -0.809049 0.308934 449.11602 REMARK 350 BIOMT2 14 0.808942 -0.308948 0.500164 -0.06209 REMARK 350 BIOMT3 14 -0.309212 0.499991 0.808948 0.07150 REMARK 350 BIOMT1 15 -0.309164 0.500104 0.808896 0.05328 REMARK 350 BIOMT2 15 -0.499951 -0.809017 0.309095 449.03908 REMARK 350 BIOMT3 15 0.808991 -0.308848 0.500147 -0.07522 REMARK 350 BIOMT1 16 0.809042 -0.308897 0.500034 -0.04418 REMARK 350 BIOMT2 16 -0.309113 0.499975 0.808996 0.02561 REMARK 350 BIOMT3 16 -0.499901 -0.809078 0.309017 449.07541 REMARK 350 BIOMT1 17 0.808926 0.309179 0.500047 -138.79781 REMARK 350 BIOMT2 17 -0.309002 -0.500000 0.809023 224.52002 REMARK 350 BIOMT3 17 0.500156 -0.808955 -0.308926 363.23872 REMARK 350 BIOMT1 18 0.000132 -1.000000 0.000028 449.04792 REMARK 350 BIOMT2 18 -0.000160 0.000028 1.000000 0.01337 REMARK 350 BIOMT3 18 -1.000000 -0.000132 -0.000160 449.16582 REMARK 350 BIOMT1 19 -0.809133 0.308965 0.499844 224.63623 REMARK 350 BIOMT2 19 0.308965 -0.499864 0.809121 85.70049 REMARK 350 BIOMT3 19 0.499844 0.809121 0.308997 -138.75138 REMARK 350 BIOMT1 20 -0.000132 -0.000022 1.000000 0.04104 REMARK 350 BIOMT2 20 1.000000 0.000110 0.000132 -0.07698 REMARK 350 BIOMT3 20 -0.000110 1.000000 0.000022 0.03584 REMARK 350 BIOMT1 21 0.308911 -0.499870 0.809138 85.73312 REMARK 350 BIOMT2 21 -0.499870 -0.809101 -0.309008 587.83267 REMARK 350 BIOMT3 21 0.809138 -0.309008 -0.499810 224.46493 REMARK 350 BIOMT1 22 -0.308976 -0.499962 0.809056 224.52048 REMARK 350 BIOMT2 22 -0.500129 0.808976 0.308914 85.83067 REMARK 350 BIOMT3 22 -0.808953 -0.309186 -0.500000 587.89490 REMARK 350 BIOMT1 23 0.500066 -0.808917 0.309172 224.46496 REMARK 350 BIOMT2 23 -0.809051 -0.309083 0.499905 363.35217 REMARK 350 BIOMT3 23 -0.308822 -0.500121 -0.809017 587.84851 REMARK 350 BIOMT1 24 -0.809017 -0.309109 0.499943 363.36470 REMARK 350 BIOMT2 24 0.308855 0.500112 0.809010 -138.77484 REMARK 350 BIOMT3 24 -0.500099 0.808913 -0.309129 224.63397 REMARK 350 BIOMT1 25 0.308829 0.500074 0.809043 -138.74511 REMARK 350 BIOMT2 25 0.500074 -0.808933 0.309117 224.45670 REMARK 350 BIOMT3 25 0.809043 0.309117 -0.499896 85.71747 REMARK 350 BIOMT1 26 0.499934 0.809026 0.309101 -138.76711 REMARK 350 BIOMT2 26 0.809074 -0.308951 -0.499948 224.48111 REMARK 350 BIOMT3 26 -0.308974 0.500026 -0.809017 363.31881 REMARK 350 BIOMT1 27 0.500066 -0.809050 -0.308822 363.26338 REMARK 350 BIOMT2 27 -0.808917 -0.309083 -0.500120 587.87487 REMARK 350 BIOMT3 27 0.309171 0.499905 -0.809017 224.53973 REMARK 350 BIOMT1 28 -1.000000 -0.000081 0.000000 449.12488 REMARK 350 BIOMT2 28 -0.000081 1.000000 -0.000138 0.04919 REMARK 350 BIOMT3 28 0.000000 -0.000138 -1.000000 449.12473 REMARK 350 BIOMT1 29 -0.499878 -0.809117 -0.308953 587.84830 REMARK 350 BIOMT2 29 -0.809117 0.309020 0.499836 224.59913 REMARK 350 BIOMT3 29 -0.308953 0.499836 -0.809142 363.38503 REMARK 350 BIOMT1 30 -0.500122 0.808960 0.308969 85.84320 REMARK 350 BIOMT2 30 0.808960 0.309152 0.500009 -138.81345 REMARK 350 BIOMT3 30 0.308969 0.500009 -0.809030 224.56477 REMARK 350 BIOMT1 31 1.000000 0.000081 0.000182 -0.05911 REMARK 350 BIOMT2 31 0.000081 -1.000000 0.000000 449.04298 REMARK 350 BIOMT3 31 0.000182 0.000000 -1.000000 449.05296 REMARK 350 BIOMT1 32 0.309017 0.499896 -0.809082 224.59740 REMARK 350 BIOMT2 32 -0.499992 0.809060 0.308917 85.78041 REMARK 350 BIOMT3 32 0.809022 0.309074 0.499957 -138.78207 REMARK 350 BIOMT1 33 0.000051 0.000022 -1.000000 449.08374 REMARK 350 BIOMT2 33 1.000000 -0.000028 0.000051 -0.02773 REMARK 350 BIOMT3 33 -0.000028 -1.000000 -0.000022 449.08886 REMARK 350 BIOMT1 34 -0.308870 0.499936 -0.809113 363.34368 REMARK 350 BIOMT2 34 -0.500007 -0.809017 -0.309005 587.84409 REMARK 350 BIOMT3 34 -0.809069 0.309120 0.499853 224.57880 REMARK 350 BIOMT1 35 -0.808951 0.309044 -0.500090 449.10973 REMARK 350 BIOMT2 35 0.309043 -0.500086 -0.808954 449.06634 REMARK 350 BIOMT3 35 -0.500090 -0.808953 0.309037 449.08500 REMARK 350 BIOMT1 36 0.500057 0.808958 -0.309081 0.03135 REMARK 350 BIOMT2 36 -0.808985 0.309017 -0.500052 449.09229 REMARK 350 BIOMT3 36 -0.309009 0.500096 0.808961 -0.00026 REMARK 350 BIOMT1 37 0.309017 -0.500048 -0.808987 449.09430 REMARK 350 BIOMT2 37 0.500064 0.808974 -0.309026 -0.00907 REMARK 350 BIOMT3 37 0.808978 -0.309051 0.500043 -0.00343 REMARK 350 BIOMT1 38 -0.308976 -0.500129 -0.808953 587.87684 REMARK 350 BIOMT2 38 -0.499961 0.808976 -0.309186 224.58544 REMARK 350 BIOMT3 38 0.809056 0.308914 -0.500000 85.78347 REMARK 350 BIOMT1 39 -0.500010 0.809008 -0.309024 224.57542 REMARK 350 BIOMT2 39 0.809008 0.309014 -0.500016 85.75906 REMARK 350 BIOMT3 39 -0.309024 -0.500016 -0.809004 587.86755 REMARK 350 BIOMT1 40 0.809108 0.308963 -0.499887 85.74189 REMARK 350 BIOMT2 40 -0.308925 -0.500000 -0.809052 587.83625 REMARK 350 BIOMT3 40 -0.499910 0.809038 -0.309108 224.55878 REMARK 350 BIOMT1 41 0.000051 1.000000 -0.000028 0.01765 REMARK 350 BIOMT2 41 0.000022 -0.000028 -1.000000 449.07879 REMARK 350 BIOMT3 41 -1.000000 0.000051 -0.000022 449.09382 REMARK 350 BIOMT1 42 0.809042 -0.309112 -0.499900 224.53653 REMARK 350 BIOMT2 42 -0.308897 0.499975 -0.809079 363.31087 REMARK 350 BIOMT3 42 0.500034 0.808996 0.309017 -138.77064 REMARK 350 BIOMT1 43 -0.809017 -0.309031 -0.499991 587.87920 REMARK 350 BIOMT2 43 0.309072 0.499888 -0.809065 224.56025 REMARK 350 BIOMT3 43 0.499966 -0.809081 -0.308905 363.30515 REMARK 350 BIOMT1 44 -0.499990 -0.808983 0.309121 449.05700 REMARK 350 BIOMT2 44 -0.808983 0.308882 -0.500138 449.14133 REMARK 350 BIOMT3 44 0.309121 -0.500138 -0.808892 449.06329 REMARK 350 BIOMT1 45 -0.309058 0.499982 0.809012 0.03078 REMARK 350 BIOMT2 45 0.499926 0.809058 -0.309029 0.00358 REMARK 350 BIOMT3 45 -0.809047 0.308939 -0.500000 449.12816 REMARK 350 BIOMT1 46 0.808926 -0.309003 0.500156 -0.02168 REMARK 350 BIOMT2 46 0.309178 -0.500000 -0.808955 449.01715 REMARK 350 BIOMT3 46 0.500047 0.809022 -0.308926 -0.02223 REMARK 350 BIOMT1 47 0.808992 0.308990 0.500057 -138.77262 REMARK 350 BIOMT2 47 0.309069 0.500025 -0.808981 224.51145 REMARK 350 BIOMT3 47 -0.500009 0.809012 0.309017 85.78883 REMARK 350 BIOMT1 48 -0.000051 -1.000000 0.000110 449.07066 REMARK 350 BIOMT2 48 0.000160 -0.000110 -1.000000 449.06613 REMARK 350 BIOMT3 48 1.000000 -0.000051 0.000160 -0.03124 REMARK 350 BIOMT1 49 -0.809017 0.309072 0.499966 224.55882 REMARK 350 BIOMT2 49 -0.309031 0.499888 -0.809081 363.36086 REMARK 350 BIOMT3 49 -0.499991 -0.809065 -0.308905 587.84535 REMARK 350 BIOMT1 50 -0.000051 0.000160 1.000000 -0.01820 REMARK 350 BIOMT2 50 -1.000000 -0.000110 -0.000051 449.11969 REMARK 350 BIOMT3 50 0.000110 -1.000000 0.000160 449.01688 REMARK 350 BIOMT1 51 0.309017 -0.499993 0.809022 85.76290 REMARK 350 BIOMT2 51 0.499896 0.809060 0.309074 -138.78314 REMARK 350 BIOMT3 51 -0.809082 0.308917 0.499957 224.60366 REMARK 350 BIOMT1 52 -0.309164 -0.499952 0.808991 224.57535 REMARK 350 BIOMT2 52 0.500104 -0.809017 -0.308848 363.23053 REMARK 350 BIOMT3 52 0.808896 0.309095 0.500147 -138.80137 REMARK 350 BIOMT1 53 0.499943 -0.809033 0.309066 224.54238 REMARK 350 BIOMT2 53 0.809092 0.309016 -0.499879 85.70908 REMARK 350 BIOMT3 53 0.308913 0.499974 0.809073 -138.75474 REMARK 350 BIOMT1 54 -0.809083 -0.308922 0.499952 363.33515 REMARK 350 BIOMT2 54 -0.308921 -0.500136 -0.808969 587.84728 REMARK 350 BIOMT3 54 0.499953 -0.808969 0.309219 224.48496 REMARK 350 BIOMT1 55 0.309017 0.500064 0.808978 -138.77065 REMARK 350 BIOMT2 55 -0.500048 0.808974 -0.309051 224.57520 REMARK 350 BIOMT3 55 -0.808987 -0.309026 0.500043 363.31030 REMARK 350 BIOMT1 56 0.499944 0.809092 0.308913 -138.74190 REMARK 350 BIOMT2 56 -0.809034 0.309017 0.499973 224.55055 REMARK 350 BIOMT3 56 0.309065 -0.499879 0.809073 85.70851 REMARK 350 BIOMT1 57 0.500056 -0.808985 -0.309009 363.29309 REMARK 350 BIOMT2 57 0.808958 0.309017 0.500096 -138.80214 REMARK 350 BIOMT3 57 -0.309081 -0.500052 0.808961 224.57945 REMARK 350 BIOMT1 58 -1.000000 0.000000 -0.000182 449.14737 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000138 449.03022 REMARK 350 BIOMT3 58 -0.000182 0.000138 1.000000 0.00982 REMARK 350 BIOMT1 59 -0.500000 -0.809001 -0.309060 587.87385 REMARK 350 BIOMT2 59 0.809076 -0.309086 -0.499861 224.49159 REMARK 350 BIOMT3 59 0.308862 -0.499984 0.809086 85.77471 REMARK 350 BIOMT1 60 -0.500000 0.809076 0.308862 85.81348 REMARK 350 BIOMT2 60 -0.809001 -0.309086 -0.499984 587.86355 REMARK 350 BIOMT3 60 -0.309060 -0.499862 0.809086 224.50379 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -2 REMARK 465 PRO A -1 REMARK 465 VAL A 0 REMARK 465 SER B -9 REMARK 465 PRO B -8 REMARK 465 THR B -7 REMARK 465 VAL B -6 REMARK 465 GLU B -5 REMARK 465 ALA B -4 REMARK 465 CYS B -3 REMARK 465 GLY B -2 REMARK 465 TYR B -1 REMARK 465 SER B 0 REMARK 465 GLY D -22 REMARK 465 ALA D -21 REMARK 465 GLN D -20 REMARK 465 VAL D -19 REMARK 465 SER D -18 REMARK 465 ARG D -17 REMARK 465 GLN D -16 REMARK 465 ASN D -15 REMARK 465 VAL D -14 REMARK 465 GLY D -13 REMARK 465 THR D -12 REMARK 465 HIS D -11 REMARK 465 SER D -10 REMARK 465 THR D -9 REMARK 465 GLN D -8 REMARK 465 ASN D -7 REMARK 465 SER D -6 REMARK 465 VAL D -5 REMARK 465 SER D -4 REMARK 465 ASN D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 ASP D 35 REMARK 465 VAL D 36 REMARK 465 LEU D 37 REMARK 465 GLU D 38 REMARK 465 LYS D 39 REMARK 465 GLY D 40 REMARK 465 ILE D 41 REMARK 465 PRO D 42 REMARK 465 THR D 43 REMARK 465 LEU D 44 REMARK 465 GLN D 45 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU D 1 CG CD1 CD2 REMARK 470 ASN D 2 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 90 44.00 72.44 REMARK 500 LEU A 98 48.76 -94.87 REMARK 500 CYS A 243 77.28 53.54 REMARK 500 ARG B 8 -64.40 -95.54 REMARK 500 ASN B 20 -154.25 53.78 REMARK 500 ASP B 47 -121.45 63.42 REMARK 500 LEU B 76 35.87 -98.69 REMARK 500 ASP B 167 10.83 -145.18 REMARK 500 ASN C 57 37.00 -99.10 REMARK 500 SER C 64 -175.29 -172.10 REMARK 500 GLN C 193 -61.00 -94.87 REMARK 500 ARG C 195 174.15 177.93 REMARK 500 GLU D 21 -105.98 -111.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50930 RELATED DB: EMDB REMARK 900 RHINOVIRUS A2 UNCOATING INTERMEDIATE REVEALING THE NATURAL POCKET REMARK 900 FACTOR (PH 5.8 AND 4 DEGREES CELSIUS) DBREF 9G0B A -2 280 UNP P04936 POLG_HRV2 568 850 DBREF 9G0B B -9 251 UNP P04936 POLG_HRV2 70 330 DBREF 9G0B C 1 237 UNP P04936 POLG_HRV2 331 567 DBREF 9G0B D -22 45 UNP P04936 POLG_HRV2 2 69 SEQRES 1 A 283 ASN PRO VAL GLU ASN TYR ILE ASP GLU VAL LEU ASN GLU SEQRES 2 A 283 VAL LEU VAL VAL PRO ASN ILE ASN SER SER ASN PRO THR SEQRES 3 A 283 THR SER ASN SER ALA PRO ALA LEU ASP ALA ALA GLU THR SEQRES 4 A 283 GLY HIS THR SER SER VAL GLN PRO GLU ASP VAL ILE GLU SEQRES 5 A 283 THR ARG TYR VAL GLN THR SER GLN THR ARG ASP GLU MET SEQRES 6 A 283 SER LEU GLU SER PHE LEU GLY ARG SER GLY CYS ILE HIS SEQRES 7 A 283 GLU SER LYS LEU GLU VAL THR LEU ALA ASN TYR ASN LYS SEQRES 8 A 283 GLU ASN PHE THR VAL TRP ALA ILE ASN LEU GLN GLU MET SEQRES 9 A 283 ALA GLN ILE ARG ARG LYS PHE GLU LEU PHE THR TYR THR SEQRES 10 A 283 ARG PHE ASP SER GLU ILE THR LEU VAL PRO CYS ILE SER SEQRES 11 A 283 ALA LEU SER GLN ASP ILE GLY HIS ILE THR MET GLN TYR SEQRES 12 A 283 MET TYR VAL PRO PRO GLY ALA PRO VAL PRO ASN SER ARG SEQRES 13 A 283 ASP ASP TYR ALA TRP GLN SER GLY THR ASN ALA SER VAL SEQRES 14 A 283 PHE TRP GLN HIS GLY GLN ALA TYR PRO ARG PHE SER LEU SEQRES 15 A 283 PRO PHE LEU SER VAL ALA SER ALA TYR TYR MET PHE TYR SEQRES 16 A 283 ASP GLY TYR ASP GLU GLN ASP GLN ASN TYR GLY THR ALA SEQRES 17 A 283 ASN THR ASN ASN MET GLY SER LEU CYS SER ARG ILE VAL SEQRES 18 A 283 THR GLU LYS HIS ILE HIS LYS VAL HIS ILE MET THR ARG SEQRES 19 A 283 ILE TYR HIS LYS ALA LYS HIS VAL LYS ALA TRP CYS PRO SEQRES 20 A 283 ARG PRO PRO ARG ALA LEU GLU TYR THR ARG ALA HIS ARG SEQRES 21 A 283 THR ASN PHE LYS ILE GLU ASP ARG SER ILE GLN THR ALA SEQRES 22 A 283 ILE VAL THR ARG PRO ILE ILE THR THR ALA SEQRES 1 B 261 SER PRO THR VAL GLU ALA CYS GLY TYR SER ASP ARG ILE SEQRES 2 B 261 ILE GLN ILE THR ARG GLY ASP SER THR ILE THR SER GLN SEQRES 3 B 261 ASP VAL ALA ASN ALA ILE VAL ALA TYR GLY VAL TRP PRO SEQRES 4 B 261 HIS TYR LEU SER SER LYS ASP ALA SER ALA ILE ASP LYS SEQRES 5 B 261 PRO SER GLN PRO ASP THR SER SER ASN ARG PHE TYR THR SEQRES 6 B 261 LEU ARG SER VAL THR TRP SER SER SER SER LYS GLY TRP SEQRES 7 B 261 TRP TRP LYS LEU PRO ASP ALA LEU LYS ASP MET GLY ILE SEQRES 8 B 261 PHE GLY GLU ASN MET PHE TYR HIS TYR LEU GLY ARG SER SEQRES 9 B 261 GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 B 261 HIS GLN GLY THR LEU ILE VAL ALA LEU ILE PRO GLU HIS SEQRES 11 B 261 GLN ILE ALA SER ALA LEU HIS GLY ASN VAL ASN VAL GLY SEQRES 12 B 261 TYR ASN TYR THR HIS PRO GLY GLU THR GLY ARG GLU VAL SEQRES 13 B 261 LYS ALA GLU THR ARG LEU ASN PRO ASP LEU GLN PRO THR SEQRES 14 B 261 GLU GLU TYR TRP LEU ASN PHE ASP GLY THR LEU LEU GLY SEQRES 15 B 261 ASN ILE THR ILE PHE PRO HIS GLN PHE ILE ASN LEU ARG SEQRES 16 B 261 SER ASN ASN SER ALA THR ILE ILE ALA PRO TYR VAL ASN SEQRES 17 B 261 ALA VAL PRO MET ASP SER MET ARG SER HIS ASN ASN TRP SEQRES 18 B 261 SER LEU VAL ILE ILE PRO ILE CYS PRO LEU GLU THR SER SEQRES 19 B 261 SER ALA ILE ASN THR ILE PRO ILE THR ILE SER ILE SER SEQRES 20 B 261 PRO MET CYS ALA GLU PHE SER GLY ALA ARG ALA LYS ARG SEQRES 21 B 261 GLN SEQRES 1 C 237 GLY LEU PRO VAL PHE ILE THR PRO GLY SER GLY GLN PHE SEQRES 2 C 237 LEU THR THR ASP ASP PHE GLN SER PRO CYS ALA LEU PRO SEQRES 3 C 237 TRP TYR HIS PRO THR LYS GLU ILE SER ILE PRO GLY GLU SEQRES 4 C 237 VAL LYS ASN LEU VAL GLU ILE CYS GLN VAL ASP SER LEU SEQRES 5 C 237 VAL PRO ILE ASN ASN THR ASP THR TYR ILE ASN SER GLU SEQRES 6 C 237 ASN MET TYR SER VAL VAL LEU GLN SER SER ILE ASN ALA SEQRES 7 C 237 PRO ASP LYS ILE PHE SER ILE ARG THR ASP VAL ALA SER SEQRES 8 C 237 GLN PRO LEU ALA THR THR LEU ILE GLY GLU ILE SER SER SEQRES 9 C 237 TYR PHE THR HIS TRP THR GLY SER LEU ARG PHE SER PHE SEQRES 10 C 237 MET PHE CYS GLY THR ALA ASN THR THR VAL LYS LEU LEU SEQRES 11 C 237 LEU ALA TYR THR PRO PRO GLY ILE ALA GLU PRO THR THR SEQRES 12 C 237 ARG LYS ASP ALA MET LEU GLY THR HIS VAL ILE TRP ASP SEQRES 13 C 237 VAL GLY LEU GLN SER THR ILE SER MET VAL VAL PRO TRP SEQRES 14 C 237 ILE SER ALA SER HIS TYR ARG ASN THR SER PRO GLY ARG SEQRES 15 C 237 SER THR SER GLY TYR ILE THR CYS TRP TYR GLN THR ARG SEQRES 16 C 237 LEU VAL ILE PRO PRO GLN THR PRO PRO THR ALA ARG LEU SEQRES 17 C 237 LEU CYS PHE VAL SER GLY CYS LYS ASP PHE CYS LEU ARG SEQRES 18 C 237 MET ALA ARG ASP THR ASN LEU HIS LEU GLN SER GLY ALA SEQRES 19 C 237 ILE ALA GLN SEQRES 1 D 68 GLY ALA GLN VAL SER ARG GLN ASN VAL GLY THR HIS SER SEQRES 2 D 68 THR GLN ASN SER VAL SER ASN GLY SER SER LEU ASN TYR SEQRES 3 D 68 PHE ASN ILE ASN TYR PHE LYS ASP ALA ALA SER ASN GLY SEQRES 4 D 68 ALA SER LYS LEU GLU PHE THR GLN ASP PRO SER LYS PHE SEQRES 5 D 68 THR ASP PRO VAL LYS ASP VAL LEU GLU LYS GLY ILE PRO SEQRES 6 D 68 THR LEU GLN HET DAO A6001 14 HETNAM DAO LAURIC ACID FORMUL 5 DAO C12 H24 O2 HELIX 1 AA1 GLU A 1 LEU A 8 1 8 HELIX 2 AA2 ALA A 33 GLY A 37 5 5 HELIX 3 AA3 GLN A 43 VAL A 47 5 5 HELIX 4 AA4 SER A 63 GLY A 69 1 7 HELIX 5 AA5 MET A 101 GLU A 109 1 9 HELIX 6 AA6 ASP A 155 SER A 160 5 6 HELIX 7 AA7 TYR B 25 VAL B 27 5 3 HELIX 8 AA8 PRO B 46 SER B 50 5 5 HELIX 9 AA9 GLY B 80 HIS B 89 1 10 HELIX 10 AB1 TYR B 134 HIS B 138 5 5 HELIX 11 AB2 GLU B 161 ASN B 165 5 5 HELIX 12 AB3 ASN B 173 PHE B 177 5 5 HELIX 13 AB4 LEU C 43 GLN C 48 1 6 HELIX 14 AB5 GLU C 65 SER C 69 5 5 HELIX 15 AB6 PRO C 93 THR C 96 5 4 HELIX 16 AB7 THR C 97 SER C 104 1 8 HELIX 17 AB8 THR C 143 LEU C 149 1 7 SHEET 1 AA1 5 LEU A 31 ASP A 32 0 SHEET 2 AA1 5 THR C 162 VAL C 167 -1 O THR C 162 N ASP A 32 SHEET 3 AA1 5 LEU C 113 CYS C 120 -1 N PHE C 115 O MET C 165 SHEET 4 AA1 5 THR C 205 GLY C 214 -1 O SER C 213 N ARG C 114 SHEET 5 AA1 5 SER C 51 LEU C 52 -1 N SER C 51 O VAL C 212 SHEET 1 AA2 5 LEU A 31 ASP A 32 0 SHEET 2 AA2 5 THR C 162 VAL C 167 -1 O THR C 162 N ASP A 32 SHEET 3 AA2 5 LEU C 113 CYS C 120 -1 N PHE C 115 O MET C 165 SHEET 4 AA2 5 THR C 205 GLY C 214 -1 O SER C 213 N ARG C 114 SHEET 5 AA2 5 VAL C 70 GLN C 73 -1 N LEU C 72 O ALA C 206 SHEET 1 AA3 4 GLY A 72 GLU A 80 0 SHEET 2 AA3 4 VAL A 226 TRP A 242 -1 O ILE A 228 N LEU A 79 SHEET 3 AA3 4 TYR A 113 ALA A 128 -1 N ASP A 117 O LYS A 237 SHEET 4 AA3 4 ARG A 176 LEU A 179 -1 O PHE A 177 N ILE A 120 SHEET 1 AA4 4 GLY A 72 GLU A 80 0 SHEET 2 AA4 4 VAL A 226 TRP A 242 -1 O ILE A 228 N LEU A 79 SHEET 3 AA4 4 TYR A 113 ALA A 128 -1 N ASP A 117 O LYS A 237 SHEET 4 AA4 4 TYR A 188 TYR A 189 -1 O TYR A 188 N THR A 114 SHEET 1 AA5 4 PHE A 91 ALA A 95 0 SHEET 2 AA5 4 SER A 212 ILE A 217 -1 O LEU A 213 N TRP A 94 SHEET 3 AA5 4 THR A 137 VAL A 143 -1 N MET A 141 O CYS A 214 SHEET 4 AA5 4 SER A 165 GLN A 169 -1 O TRP A 168 N MET A 138 SHEET 1 AA6 2 ILE B 4 THR B 7 0 SHEET 2 AA6 2 THR B 12 SER B 15 -1 O ILE B 13 N ILE B 6 SHEET 1 AA7 5 ILE B 22 VAL B 23 0 SHEET 2 AA7 5 SER B 189 ALA B 194 1 O ILE B 193 N ILE B 22 SHEET 3 AA7 5 LEU B 91 GLN B 101 -1 N ILE B 98 O ILE B 192 SHEET 4 AA7 5 ILE B 230 SER B 244 -1 O MET B 239 N GLY B 95 SHEET 5 AA7 5 TYR B 54 THR B 55 -1 N TYR B 54 O ILE B 236 SHEET 1 AA8 5 ILE B 22 VAL B 23 0 SHEET 2 AA8 5 SER B 189 ALA B 194 1 O ILE B 193 N ILE B 22 SHEET 3 AA8 5 LEU B 91 GLN B 101 -1 N ILE B 98 O ILE B 192 SHEET 4 AA8 5 ILE B 230 SER B 244 -1 O MET B 239 N GLY B 95 SHEET 5 AA8 5 VAL B 59 TRP B 61 -1 N TRP B 61 O ILE B 230 SHEET 1 AA9 5 ARG B 144 GLU B 145 0 SHEET 2 AA9 5 TRP B 68 LEU B 72 -1 N TRP B 69 O ARG B 144 SHEET 3 AA9 5 TRP B 211 THR B 223 -1 O ILE B 215 N TRP B 68 SHEET 4 AA9 5 HIS B 108 PRO B 118 -1 N ILE B 117 O SER B 212 SHEET 5 AA9 5 HIS B 179 ASN B 183 -1 O GLN B 180 N VAL B 114 SHEET 1 AB1 4 LYS C 81 ARG C 86 0 SHEET 2 AB1 4 TYR C 187 VAL C 197 -1 O CYS C 190 N ILE C 82 SHEET 3 AB1 4 THR C 126 THR C 134 -1 N THR C 134 O TYR C 187 SHEET 4 AB1 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB2 3 ARG C 176 ASN C 177 0 SHEET 2 AB2 3 PHE C 106 THR C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB2 3 CYS C 219 ALA C 223 -1 O CYS C 219 N THR C 110 CISPEP 1 LEU B 72 PRO B 73 0 -1.47 CISPEP 2 GLN C 92 PRO C 93 0 -1.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000