HEADER MOTOR PROTEIN 10-JUL-24 9G1W TITLE NMR SOLUTION STRUCTURE OF THE THERMUS THERMOPHILUS PILF-GSPIIA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV PILUS ASSEMBLY ATPASE PILB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 GENE: PILB, TTHA0364; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PILT-CLASS, GSPII, PILF, MOTOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NEISSNER,J.WOEHNERT,C.HACKER REVDAT 1 21-MAY-25 9G1W 0 JRNL AUTH K.NEISSNER,C.FROHNAPFEL,H.KELLER,E.DUCHARDT-FERNER, JRNL AUTH 2 V.SCHNEIDER,Z.KAMJOU,B.AVERHOFF,J.WOHNERT JRNL TITL NMR SOLUTION STRUCTURE OF THE N-TERMINAL GSPII DOMAIN FROM JRNL TITL 2 THE THERMUS THERMOPHILUS TRAFFIC ATPASE PILF AND JRNL TITL 3 RECONSTRUCTION OF ITS C-DI-GMP BINDING CAPABILITY. JRNL REF CHEMBIOCHEM V. 26 00959 2025 JRNL REFN ESSN 1439-7633 JRNL PMID 39960869 JRNL DOI 10.1002/CBIC.202400959 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292137933. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : NACL 200 REMARK 210 PRESSURE : AMBIENT BAR REMARK 210 SAMPLE CONTENTS : 438 UM [U-13C; U-15N] PILF1-154, REMARK 210 90% H2O/10% D2O; 500 UM [U-100% REMARK 210 15N] PILF1-154, 90% H2O/10% D2O; REMARK 210 550 UM [U-100% 15N] PILF1-154, REMARK 210 90% H2O/10% D2O; 608 UM [U-15N]- REMARK 210 LEU/VAL-13C PILF1-154, 90% H2O/ REMARK 210 10% D2O; 335 UM [U-13C; U-15N] REMARK 210 PILF1-154, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCACB; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D CBCA(CO)NH; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 950 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II; AVANCE III; AVANCE REMARK 210 NEO; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4.2, CYANA, CCPNMR REMARK 210 ANALYSIS, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 114 HG SER A 117 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 13 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 96 -31.92 -130.40 REMARK 500 1 LEU A 152 80.32 51.89 REMARK 500 2 GLU A 69 74.43 -114.54 REMARK 500 2 PHE A 96 -40.61 -136.54 REMARK 500 2 LEU A 152 84.00 61.45 REMARK 500 3 PHE A 96 -4.77 -141.96 REMARK 500 3 PRO A 112 0.25 -61.31 REMARK 500 3 LEU A 152 82.94 76.08 REMARK 500 3 PRO A 153 -168.41 -71.03 REMARK 500 4 PRO A 112 -9.42 -56.39 REMARK 500 4 LEU A 152 89.06 62.79 REMARK 500 5 SER A 2 96.70 55.73 REMARK 500 5 GLU A 69 75.38 -109.29 REMARK 500 5 PRO A 112 -4.16 -57.92 REMARK 500 5 LEU A 152 80.73 58.10 REMARK 500 5 PRO A 153 -178.24 -64.51 REMARK 500 6 PHE A 96 -55.43 -122.82 REMARK 500 6 PRO A 112 -5.16 -54.48 REMARK 500 6 LEU A 152 84.63 71.82 REMARK 500 7 SER A 2 -169.94 -166.52 REMARK 500 7 GLU A 69 79.86 -113.94 REMARK 500 7 ASN A 111 62.17 -112.26 REMARK 500 7 LEU A 152 86.07 103.17 REMARK 500 8 PHE A 96 -10.78 -146.37 REMARK 500 8 LEU A 152 83.47 58.12 REMARK 500 9 ASN A 111 72.03 -113.72 REMARK 500 9 LEU A 152 76.63 52.70 REMARK 500 10 SER A 39 170.32 -55.15 REMARK 500 10 LEU A 152 83.26 50.01 REMARK 500 11 PHE A 96 -13.21 -144.53 REMARK 500 11 LEU A 152 86.78 48.00 REMARK 500 12 PHE A 96 -50.06 -138.05 REMARK 500 12 LEU A 152 83.31 53.16 REMARK 500 13 PHE A 96 -50.74 -146.57 REMARK 500 13 LEU A 152 78.51 49.12 REMARK 500 14 LEU A 152 88.40 108.42 REMARK 500 15 VAL A 3 -169.05 -109.69 REMARK 500 15 GLU A 69 73.41 -101.73 REMARK 500 15 PRO A 112 -4.08 -52.86 REMARK 500 15 LEU A 152 79.60 58.13 REMARK 500 16 GLU A 69 74.09 -100.06 REMARK 500 16 PHE A 96 -35.90 -132.25 REMARK 500 16 ASN A 111 75.25 -117.29 REMARK 500 16 LEU A 152 81.26 57.41 REMARK 500 17 PHE A 96 -13.57 -146.68 REMARK 500 17 LEU A 152 85.23 62.41 REMARK 500 18 SER A 2 32.32 -147.92 REMARK 500 18 LEU A 152 81.68 64.13 REMARK 500 18 PRO A 153 -168.92 -75.77 REMARK 500 20 PHE A 96 -53.63 -127.60 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 147 0.10 SIDE CHAIN REMARK 500 2 ARG A 34 0.09 SIDE CHAIN REMARK 500 3 ARG A 10 0.09 SIDE CHAIN REMARK 500 3 ARG A 28 0.08 SIDE CHAIN REMARK 500 4 PHE A 109 0.08 SIDE CHAIN REMARK 500 6 TYR A 141 0.07 SIDE CHAIN REMARK 500 8 ARG A 62 0.09 SIDE CHAIN REMARK 500 8 ARG A 106 0.11 SIDE CHAIN REMARK 500 10 ARG A 28 0.10 SIDE CHAIN REMARK 500 10 ARG A 106 0.08 SIDE CHAIN REMARK 500 11 ARG A 32 0.08 SIDE CHAIN REMARK 500 12 ARG A 34 0.15 SIDE CHAIN REMARK 500 12 ARG A 72 0.16 SIDE CHAIN REMARK 500 14 TYR A 147 0.08 SIDE CHAIN REMARK 500 15 ARG A 106 0.10 SIDE CHAIN REMARK 500 15 TYR A 147 0.06 SIDE CHAIN REMARK 500 16 TYR A 147 0.08 SIDE CHAIN REMARK 500 18 ARG A 54 0.08 SIDE CHAIN REMARK 500 19 ARG A 62 0.13 SIDE CHAIN REMARK 500 20 ARG A 106 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34929 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THE THERMUS THERMOPHILUS PILF-GSPIIA REMARK 900 DOMAIN DBREF 9G1W A 1 154 UNP Q5SLC9 PILB_THET8 1 154 SEQRES 1 A 154 MET SER VAL LEU THR ILE GLY ASP LYS ARG LEU GLY ALA SEQRES 2 A 154 ALA LEU LEU ASP ALA GLY LEU LEU THR ASP GLU GLU LEU SEQRES 3 A 154 GLN ARG ALA LEU GLU ARG HIS ARG GLU VAL GLY GLY SER SEQRES 4 A 154 LEU ALA GLU VAL LEU VAL ASP MET GLY LEU LEU SER GLU SEQRES 5 A 154 ARG ARG ILE ALA GLN THR ILE GLU ASP ARG PHE GLY ILE SEQRES 6 A 154 PRO LEU VAL GLU LEU HIS ARG VAL GLU ILE PRO PRO LYS SEQRES 7 A 154 VAL LYS ALA LEU LEU PRO ALA GLU LYS ALA LYS GLU LEU SEQRES 8 A 154 LYS ALA ILE PRO PHE ALA LEU ASP GLU GLU ALA GLY VAL SEQRES 9 A 154 VAL ARG VAL ALA PHE LEU ASN PRO LEU ASP THR LEU SER SEQRES 10 A 154 LEU GLU GLU VAL GLU ASP LEU THR GLY LEU VAL VAL GLU SEQRES 11 A 154 PRO TYR GLN THR THR LYS SER ALA PHE LEU TYR ALA LEU SEQRES 12 A 154 ALA LYS HIS TYR PRO GLU LEU GLY LEU PRO VAL HELIX 1 AA1 THR A 5 ALA A 18 1 14 HELIX 2 AA2 THR A 22 GLY A 37 1 16 HELIX 3 AA3 SER A 39 MET A 47 1 9 HELIX 4 AA4 SER A 51 GLY A 64 1 14 HELIX 5 AA5 PRO A 76 ALA A 81 1 6 HELIX 6 AA6 PRO A 84 LYS A 92 1 9 HELIX 7 AA7 ASP A 114 LEU A 124 1 11 HELIX 8 AA8 THR A 135 TYR A 147 1 13 SHEET 1 AA1 3 ALA A 93 ASP A 99 0 SHEET 2 AA1 3 VAL A 104 PHE A 109 -1 O ARG A 106 N PHE A 96 SHEET 3 AA1 3 VAL A 128 GLN A 133 1 O GLU A 130 N VAL A 107 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 221 0 0 8 3 0 0 6 1190 1 0 12 END