HEADER TOXIN 10-JUL-24 9G1Y TITLE STAPHYCOCCUS AUREUS MAZF IN COMPLEX WITH NABOBODY 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDORIBONUCLEASE MAZF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SAMAZF,TOXIN MAZF,MRNA INTERFERASE MAZF; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY 3; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: MAZF, SA1873; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TOXIN-ANTITOXIN SYSTEM, NANOBODY, RIBONUCLEASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR V.ZORZINI,S.HAESAERTS,R.LORIS REVDAT 2 13-NOV-24 9G1Y 1 REMARK REVDAT 1 24-JUL-24 9G1Y 0 JRNL AUTH M.PROLIC-KALINSEK,V.ZORZINI,S.HAESAERTS,P.DE BRUYN,R.LORIS JRNL TITL NANOBODY-MEDIATED ACTIVATION AND INHIBITION OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS MAZF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.369 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 14577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.987 REMARK 3 FREE R VALUE TEST SET COUNT : 727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3600 - 4.6097 0.97 2807 147 0.1895 0.2278 REMARK 3 2 4.6097 - 3.6594 0.98 2771 147 0.1739 0.2446 REMARK 3 3 3.6594 - 3.1970 0.98 2782 144 0.2433 0.3013 REMARK 3 4 3.1970 - 2.9047 0.98 2751 145 0.2788 0.3716 REMARK 3 5 2.9047 - 2.6966 0.97 2739 144 0.3054 0.3700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.458 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.865 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3724 REMARK 3 ANGLE : 1.140 5074 REMARK 3 CHIRALITY : 0.063 580 REMARK 3 PLANARITY : 0.007 654 REMARK 3 DIHEDRAL : 13.933 2216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 13.8433 19.6929 8.9405 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.3108 REMARK 3 T33: 0.3543 T12: 0.0147 REMARK 3 T13: 0.0514 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.7763 L22: 3.1557 REMARK 3 L33: 3.1936 L12: -1.2685 REMARK 3 L13: 1.3895 L23: 0.6718 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: -0.2065 S13: 0.0772 REMARK 3 S21: 0.0639 S22: 0.0491 S23: 0.2436 REMARK 3 S31: -0.2028 S32: -0.4903 S33: 0.0154 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 28.0130 5.2034 7.5702 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.1990 REMARK 3 T33: 0.2889 T12: -0.0114 REMARK 3 T13: 0.0325 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 1.6811 L22: 1.6027 REMARK 3 L33: 2.7380 L12: -0.9795 REMARK 3 L13: -0.0621 L23: -0.7292 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: -0.0362 S13: 0.0338 REMARK 3 S21: -0.0507 S22: 0.0612 S23: -0.0961 REMARK 3 S31: 0.1777 S32: -0.0038 S33: 0.0368 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 9.2865 7.9176 -21.7622 REMARK 3 T TENSOR REMARK 3 T11: 0.6203 T22: 0.8681 REMARK 3 T33: 0.5700 T12: -0.0036 REMARK 3 T13: -0.1066 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.6154 L22: 3.6704 REMARK 3 L33: 3.6339 L12: -0.5670 REMARK 3 L13: 1.6595 L23: -0.7105 REMARK 3 S TENSOR REMARK 3 S11: 0.1981 S12: 0.9269 S13: 0.0687 REMARK 3 S21: -0.9393 S22: -0.1068 S23: 0.3009 REMARK 3 S31: 0.2913 S32: 0.8030 S33: -0.0554 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 28.4864 12.4064 40.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.4536 T22: 0.3345 REMARK 3 T33: 0.3919 T12: 0.0033 REMARK 3 T13: 0.0351 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.6266 L22: 1.5552 REMARK 3 L33: 4.8790 L12: -0.2076 REMARK 3 L13: 1.0040 L23: -1.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: -0.0843 S13: 0.2637 REMARK 3 S21: 0.0444 S22: -0.0907 S23: -0.0160 REMARK 3 S31: -0.5543 S32: -0.0767 S33: 0.0902 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 0 THROUGH 2 OR REMARK 3 (RESID 3 AND (NAME N OR NAME CA OR NAME C REMARK 3 OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME NE )) OR RESID 4 THROUGH 51 OR REMARK 3 (RESID 52 THROUGH 53 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 54 THROUGH 61 OR RESID 63 THROUGH REMARK 3 69 OR (RESID 70 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG )) REMARK 3 OR RESID 71 THROUGH 112 OR (RESID 113 REMARK 3 THROUGH 114 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 0 THROUGH 48 OR REMARK 3 (RESID 49 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 50 REMARK 3 THROUGH 61 OR (RESID 63 THROUGH 65 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 66 OR (RESID 67 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 68 OR (RESID 69 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 70 THROUGH 114)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'C' AND (RESID 4 THROUGH 20 OR REMARK 3 (RESID 21 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME NE )) OR RESID 22 THROUGH 101 REMARK 3 OR (RESID 102 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 103 THROUGH 133)) REMARK 3 SELECTION : (CHAIN 'D' AND ((RESID 4 THROUGH 5 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 6 THROUGH 43 OR REMARK 3 (RESID 44 AND (NAME N )) OR RESID 46 REMARK 3 THROUGH 132 OR (RESID 133 AND (NAME N )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292140080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.697 REMARK 200 RESOLUTION RANGE LOW (A) : 45.367 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.670 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.67 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS-HCL PH 8.5, REMARK 280 30% W/V PEG4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.77000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A -1 REMARK 465 VAL A 115 REMARK 465 ALA A 116 REMARK 465 HIS A 117 REMARK 465 GLN A 118 REMARK 465 LYS A 119 REMARK 465 ASN A 120 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 GLN B -1 REMARK 465 ALA B 116 REMARK 465 HIS B 117 REMARK 465 GLN B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 ALA C 2 REMARK 465 GLN C 3 REMARK 465 LYS C 45 REMARK 465 HIS C 134 REMARK 465 HIS C 135 REMARK 465 HIS C 136 REMARK 465 HIS C 137 REMARK 465 HIS C 138 REMARK 465 HIS C 139 REMARK 465 ALA D 2 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 465 HIS D 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 0 CG OD1 OD2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 LYS A 70 CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 ASP B 0 CG OD1 OD2 REMARK 470 ARG B 3 CZ NH1 NH2 REMARK 470 ARG B 49 CZ NH1 NH2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 GLU B 62 CD OE1 OE2 REMARK 470 LYS B 63 CE NZ REMARK 470 LYS B 64 CE NZ REMARK 470 LYS B 65 CE NZ REMARK 470 LYS B 67 NZ REMARK 470 LYS B 70 CD CE NZ REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 VAL B 115 C O CB CG1 CG2 REMARK 470 VAL C 4 CG1 CG2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 GLN C 7 CG CD OE1 NE2 REMARK 470 ASP C 32 CG OD1 OD2 REMARK 470 ASP C 33 CG OD1 OD2 REMARK 470 GLY C 44 CA C O REMARK 470 GLU C 46 CD OE1 OE2 REMARK 470 SER C 56 OG REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 LYS C 67 CG CD CE NZ REMARK 470 LYS C 78 CE NZ REMARK 470 LYS C 89 CG CD CE NZ REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 GLU C 119 CG CD OE1 OE2 REMARK 470 GLN C 125 CD OE1 NE2 REMARK 470 SER C 133 CA C O CB OG REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 GLN D 7 CG CD OE1 NE2 REMARK 470 ARG D 21 CZ NH1 NH2 REMARK 470 ASP D 32 CG OD1 OD2 REMARK 470 ASP D 33 CG OD1 OD2 REMARK 470 LYS D 45 CE NZ REMARK 470 GLU D 46 CD OE1 OE2 REMARK 470 SER D 56 OG REMARK 470 ASP D 57 CG OD1 OD2 REMARK 470 LYS D 67 CG CD CE NZ REMARK 470 LYS D 78 CE NZ REMARK 470 LYS D 89 CG CD CE NZ REMARK 470 GLU D 91 CG CD OE1 OE2 REMARK 470 GLU D 102 CG CD OE1 OE2 REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 GLU D 119 CG CD OE1 OE2 REMARK 470 GLN D 125 CD OE1 NE2 REMARK 470 HIS D 136 C O CB CG ND1 CD2 CE1 REMARK 470 HIS D 136 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 80 O HOH B 201 2.18 REMARK 500 O PRO B 56 O HOH B 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 67 58.77 -52.94 REMARK 500 LYS A 88 -60.41 -93.02 REMARK 500 THR A 92 -167.35 -166.49 REMARK 500 LYS B 88 -63.37 -90.51 REMARK 500 THR B 92 -165.50 -160.73 REMARK 500 ASN B 113 -141.54 -130.85 REMARK 500 SER C 9 178.64 179.58 REMARK 500 SER C 27 -84.41 -120.23 REMARK 500 SER C 55 -70.70 -47.30 REMARK 500 ASP C 57 -20.46 88.19 REMARK 500 LYS C 117 80.33 -168.16 REMARK 500 SER D 9 -178.77 179.46 REMARK 500 SER D 27 -83.58 -117.29 REMARK 500 LYS D 45 -158.81 -91.44 REMARK 500 VAL D 50 -61.66 -108.20 REMARK 500 SER D 55 -72.49 -47.09 REMARK 500 ASP D 57 -22.61 91.78 REMARK 500 LYS D 117 80.34 -168.55 REMARK 500 HIS D 134 -118.76 68.85 REMARK 500 HIS D 135 -159.25 -78.91 REMARK 500 HIS D 135 -158.48 -80.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 9G1Y A 2 120 UNP Q7A4G9 MAZF_STAAN 2 120 DBREF 9G1Y B 2 120 UNP Q7A4G9 MAZF_STAAN 2 120 DBREF 9G1Y C 2 139 PDB 9G1Y 9G1Y 2 139 DBREF 9G1Y D 2 139 PDB 9G1Y 9G1Y 2 139 SEQADV 9G1Y MET A -12 UNP Q7A4G9 INITIATING METHIONINE SEQADV 9G1Y GLY A -11 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y SER A -10 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y SER A -9 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS A -8 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS A -7 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS A -6 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS A -5 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS A -4 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS A -3 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y SER A -2 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y GLN A -1 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y ASP A 0 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y PRO A 1 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y MET B -12 UNP Q7A4G9 INITIATING METHIONINE SEQADV 9G1Y GLY B -11 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y SER B -10 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y SER B -9 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS B -8 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS B -7 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS B -6 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS B -5 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS B -4 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y HIS B -3 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y SER B -2 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y GLN B -1 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y ASP B 0 UNP Q7A4G9 EXPRESSION TAG SEQADV 9G1Y PRO B 1 UNP Q7A4G9 EXPRESSION TAG SEQRES 1 A 133 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 133 PRO ILE ARG ARG GLY ASP VAL TYR LEU ALA ASP LEU SER SEQRES 3 A 133 PRO VAL GLN GLY SER GLU GLN GLY GLY VAL ARG PRO VAL SEQRES 4 A 133 VAL ILE ILE GLN ASN ASP THR GLY ASN LYS TYR SER PRO SEQRES 5 A 133 THR VAL ILE VAL ALA ALA ILE THR GLY ARG ILE ASN LYS SEQRES 6 A 133 ALA LYS ILE PRO THR HIS VAL GLU ILE GLU LYS LYS LYS SEQRES 7 A 133 TYR LYS LEU ASP LYS ASP SER VAL ILE LEU LEU GLU GLN SEQRES 8 A 133 ILE ARG THR LEU ASP LYS LYS ARG LEU LYS GLU LYS LEU SEQRES 9 A 133 THR TYR LEU SER ASP ASP LYS MET LYS GLU VAL ASP ASN SEQRES 10 A 133 ALA LEU MET ILE SER LEU GLY LEU ASN ALA VAL ALA HIS SEQRES 11 A 133 GLN LYS ASN SEQRES 1 B 133 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 133 PRO ILE ARG ARG GLY ASP VAL TYR LEU ALA ASP LEU SER SEQRES 3 B 133 PRO VAL GLN GLY SER GLU GLN GLY GLY VAL ARG PRO VAL SEQRES 4 B 133 VAL ILE ILE GLN ASN ASP THR GLY ASN LYS TYR SER PRO SEQRES 5 B 133 THR VAL ILE VAL ALA ALA ILE THR GLY ARG ILE ASN LYS SEQRES 6 B 133 ALA LYS ILE PRO THR HIS VAL GLU ILE GLU LYS LYS LYS SEQRES 7 B 133 TYR LYS LEU ASP LYS ASP SER VAL ILE LEU LEU GLU GLN SEQRES 8 B 133 ILE ARG THR LEU ASP LYS LYS ARG LEU LYS GLU LYS LEU SEQRES 9 B 133 THR TYR LEU SER ASP ASP LYS MET LYS GLU VAL ASP ASN SEQRES 10 B 133 ALA LEU MET ILE SER LEU GLY LEU ASN ALA VAL ALA HIS SEQRES 11 B 133 GLN LYS ASN SEQRES 1 C 138 ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL SEQRES 2 C 138 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 C 138 GLY PHE THR PHE ASP ASP TYR ALA ILE GLY TRP PHE ARG SEQRES 4 C 138 GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SEQRES 5 C 138 SER SER SER ASP GLY SER THR TYR TYR ALA ASP SER VAL SEQRES 6 C 138 LYS GLY ARG PHE THR ILE SER SER ASP ASN ALA LYS ASN SEQRES 7 C 138 THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 C 138 THR ALA VAL TYR TYR CYS ALA ALA ASP GLU TYR LEU CYS SEQRES 9 C 138 THR GLY LEU ALA TYR SER ASP TYR TYR PRO GLY LYS TYR SEQRES 10 C 138 GLU TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 11 C 138 SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 138 ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL SEQRES 2 D 138 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 D 138 GLY PHE THR PHE ASP ASP TYR ALA ILE GLY TRP PHE ARG SEQRES 4 D 138 GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SEQRES 5 D 138 SER SER SER ASP GLY SER THR TYR TYR ALA ASP SER VAL SEQRES 6 D 138 LYS GLY ARG PHE THR ILE SER SER ASP ASN ALA LYS ASN SEQRES 7 D 138 THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 D 138 THR ALA VAL TYR TYR CYS ALA ALA ASP GLU TYR LEU CYS SEQRES 9 D 138 THR GLY LEU ALA TYR SER ASP TYR TYR PRO GLY LYS TYR SEQRES 10 D 138 GLU TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 11 D 138 SER SER HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *69(H2 O) HELIX 1 AA1 ASN A 31 SER A 38 1 8 HELIX 2 AA2 SER A 95 LEU A 110 1 16 HELIX 3 AA3 ASN B 31 SER B 38 1 8 HELIX 4 AA4 SER B 95 LEU B 110 1 16 HELIX 5 AA5 THR C 30 TYR C 34 5 5 HELIX 6 AA6 ASP C 64 LYS C 67 5 4 HELIX 7 AA7 LYS C 89 THR C 93 5 5 HELIX 8 AA8 TYR C 103 SER C 111 1 9 HELIX 9 AA9 THR D 30 TYR D 34 5 5 HELIX 10 AB1 ASP D 64 LYS D 67 5 4 HELIX 11 AB2 LYS D 89 THR D 93 5 5 HELIX 12 AB3 TYR D 103 SER D 111 1 9 SHEET 1 AA1 6 HIS A 58 ILE A 61 0 SHEET 2 AA1 6 SER A 72 ASP A 83 -1 O ILE A 74 N VAL A 59 SHEET 3 AA1 6 THR A 40 THR A 47 -1 N VAL A 43 O ARG A 80 SHEET 4 AA1 6 VAL A 23 ILE A 28 -1 N VAL A 27 O ALA A 44 SHEET 5 AA1 6 ASP A 6 ASP A 11 -1 N ASP A 6 O ILE A 28 SHEET 6 AA1 6 LEU A 87 TYR A 93 -1 O LYS A 88 N LEU A 9 SHEET 1 AA2 6 HIS B 58 ILE B 61 0 SHEET 2 AA2 6 SER B 72 ASP B 83 -1 O ILE B 74 N VAL B 59 SHEET 3 AA2 6 THR B 40 THR B 47 -1 N VAL B 41 O LEU B 82 SHEET 4 AA2 6 VAL B 23 ILE B 28 -1 N VAL B 27 O ALA B 44 SHEET 5 AA2 6 ASP B 6 ASP B 11 -1 N ASP B 6 O ILE B 28 SHEET 6 AA2 6 LEU B 87 TYR B 93 -1 O GLU B 89 N LEU B 9 SHEET 1 AA3 4 LEU C 6 SER C 9 0 SHEET 2 AA3 4 LEU C 20 ALA C 26 -1 O ALA C 25 N GLN C 7 SHEET 3 AA3 4 THR C 80 MET C 85 -1 O LEU C 83 N LEU C 22 SHEET 4 AA3 4 PHE C 70 ASP C 75 -1 N THR C 71 O GLN C 84 SHEET 1 AA4 6 GLY C 12 VAL C 14 0 SHEET 2 AA4 6 THR C 127 VAL C 131 1 O THR C 130 N VAL C 14 SHEET 3 AA4 6 ALA C 94 ASP C 101 -1 N ALA C 94 O VAL C 129 SHEET 4 AA4 6 ALA C 35 GLN C 41 -1 N PHE C 39 O TYR C 97 SHEET 5 AA4 6 ARG C 47 ILE C 53 -1 O VAL C 50 N TRP C 38 SHEET 6 AA4 6 THR C 60 TYR C 62 -1 O TYR C 61 N CYS C 52 SHEET 1 AA5 4 GLY C 12 VAL C 14 0 SHEET 2 AA5 4 THR C 127 VAL C 131 1 O THR C 130 N VAL C 14 SHEET 3 AA5 4 ALA C 94 ASP C 101 -1 N ALA C 94 O VAL C 129 SHEET 4 AA5 4 TYR C 122 TRP C 123 -1 O TYR C 122 N ALA C 100 SHEET 1 AA6 4 LEU D 6 SER D 9 0 SHEET 2 AA6 4 LEU D 20 ALA D 26 -1 O ALA D 25 N GLN D 7 SHEET 3 AA6 4 THR D 80 MET D 85 -1 O MET D 85 N LEU D 20 SHEET 4 AA6 4 PHE D 70 ASP D 75 -1 N THR D 71 O GLN D 84 SHEET 1 AA7 6 GLY D 12 VAL D 14 0 SHEET 2 AA7 6 THR D 127 VAL D 131 1 O THR D 130 N VAL D 14 SHEET 3 AA7 6 ALA D 94 ASP D 101 -1 N ALA D 94 O VAL D 129 SHEET 4 AA7 6 ALA D 35 GLN D 41 -1 N PHE D 39 O TYR D 97 SHEET 5 AA7 6 ARG D 47 ILE D 53 -1 O VAL D 50 N TRP D 38 SHEET 6 AA7 6 THR D 60 TYR D 62 -1 O TYR D 61 N CYS D 52 SHEET 1 AA8 4 GLY D 12 VAL D 14 0 SHEET 2 AA8 4 THR D 127 VAL D 131 1 O THR D 130 N VAL D 14 SHEET 3 AA8 4 ALA D 94 ASP D 101 -1 N ALA D 94 O VAL D 129 SHEET 4 AA8 4 TYR D 122 TRP D 123 -1 O TYR D 122 N ALA D 100 SSBOND 1 CYS C 24 CYS C 98 1555 1555 2.03 SSBOND 2 CYS C 52 CYS C 105 1555 1555 2.07 SSBOND 3 CYS D 24 CYS D 98 1555 1555 2.01 SSBOND 4 CYS D 52 CYS D 105 1555 1555 2.08 CISPEP 1 SER A 13 PRO A 14 0 -4.73 CISPEP 2 SER B 13 PRO B 14 0 -0.52 CRYST1 64.830 59.540 72.010 90.00 103.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015425 0.000000 0.003672 0.00000 SCALE2 0.000000 0.016795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014275 0.00000