HEADER MEMBRANE PROTEIN 11-JUL-24 9G2K TITLE CRYO-EM STRUCTURE OF IRTAB IN OUTWARD-OCCLUDED STATE IN NANODISC IN TITLE 2 COMPLEX WITH ADP-VANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYCOBACTIN IMPORT ATP-BINDING/PERMEASE PROTEIN IRTA; COMPND 3 CHAIN: A; COMPND 4 EC: 7.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MYCOBACTIN IMPORT ATP-BINDING/PERMEASE PROTEIN IRTB; COMPND 8 CHAIN: B; COMPND 9 EC: 7.2.2.-; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: CONTAINS CLEAVED, C-TERMINAL 3C ENZYME RECOGNITION COMPND 12 SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM THERMORESISTIBILE ATCC 19527; SOURCE 3 ORGANISM_TAXID: 1078020; SOURCE 4 GENE: IRTA, KEK_01485; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1211845; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM THERMORESISTIBILE ATCC 19527; SOURCE 9 ORGANISM_TAXID: 1078020; SOURCE 10 GENE: IRTB, KEK_01490; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1211845 KEYWDS ABC TRANSPORTER, TYPE IV ABC IMPORTER SIDEROPHORE, MYCOBACTIN, KEYWDS 2 HETERODIMERIC ABC TRANSPORTER, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR I.GONDA,M.A.SEEGER REVDAT 1 18-DEC-24 9G2K 0 JRNL AUTH I.GONDA,S.SORRENTINO,L.GALAZZO,N.P.LICHTI,F.M.ARNOLD, JRNL AUTH 2 A.R.MEHDIPOUR,E.BORDIGNON,M.A.SEEGER JRNL TITL THE MYCOBACTERIAL ABC TRANSPORTER IRTAB EMPLOYS A JRNL TITL 2 MEMBRANE-FACING CREVICE FOR SIDEROPHORE-MEDIATED IRON UPTAKE JRNL REF NATURE 2024 JRNL REFN ESSN 1476-4687 JRNL DOI 10.1038/S41467-024-55136-7 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, REMARK 3 ISOLDE, CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6TEJ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.140 REMARK 3 NUMBER OF PARTICLES : 150689 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9G2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139921. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : IRTAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.40 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : WILD-TYPE IRTAB IN NANODISC IN REMARK 245 COMPLEX WITH ADP-ORTHOVANADATE IN PRESENCE OF 50UM MBT REMARK 245 (UNOBSERVED) REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 6702 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6120.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 ASP A 17 REMARK 465 HIS A 18 REMARK 465 GLN A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 VAL A 22 REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 LYS A 25 REMARK 465 GLU A 26 REMARK 465 TYR A 27 REMARK 465 ILE A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 HIS A 31 REMARK 465 PHE A 32 REMARK 465 VAL A 33 REMARK 465 ARG A 34 REMARK 465 VAL A 35 REMARK 465 ARG A 36 REMARK 465 LEU A 37 REMARK 465 VAL A 38 REMARK 465 SER A 39 REMARK 465 PRO A 40 REMARK 465 THR A 41 REMARK 465 LEU A 42 REMARK 465 PHE A 43 REMARK 465 ASP A 44 REMARK 465 GLU A 45 REMARK 465 VAL A 46 REMARK 465 ILE A 47 REMARK 465 VAL A 48 REMARK 465 GLU A 49 REMARK 465 PRO A 50 REMARK 465 THR A 51 REMARK 465 SER A 52 REMARK 465 TRP A 53 REMARK 465 LEU A 54 REMARK 465 ARG A 55 REMARK 465 PHE A 56 REMARK 465 TRP A 57 REMARK 465 PHE A 58 REMARK 465 PRO A 59 REMARK 465 ASP A 60 REMARK 465 PRO A 61 REMARK 465 ASP A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 ASP A 65 REMARK 465 THR A 66 REMARK 465 GLU A 67 REMARK 465 PHE A 68 REMARK 465 GLN A 69 REMARK 465 ARG A 70 REMARK 465 ALA A 71 REMARK 465 TYR A 72 REMARK 465 THR A 73 REMARK 465 ILE A 74 REMARK 465 THR A 75 REMARK 465 GLU A 76 REMARK 465 SER A 77 REMARK 465 ASP A 78 REMARK 465 PRO A 79 REMARK 465 GLU A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 ARG A 83 REMARK 465 PHE A 84 REMARK 465 ALA A 85 REMARK 465 VAL A 86 REMARK 465 ASP A 87 REMARK 465 MET A 88 REMARK 465 VAL A 89 REMARK 465 LEU A 90 REMARK 465 HIS A 91 REMARK 465 GLU A 92 REMARK 465 PRO A 93 REMARK 465 ALA A 94 REMARK 465 GLY A 95 REMARK 465 PRO A 96 REMARK 465 ALA A 97 REMARK 465 SER A 98 REMARK 465 THR A 99 REMARK 465 TRP A 100 REMARK 465 ALA A 101 REMARK 465 ARG A 102 REMARK 465 THR A 103 REMARK 465 VAL A 104 REMARK 465 GLU A 105 REMARK 465 PRO A 106 REMARK 465 GLY A 107 REMARK 465 ALA A 108 REMARK 465 THR A 109 REMARK 465 ILE A 110 REMARK 465 ALA A 111 REMARK 465 VAL A 112 REMARK 465 MET A 113 REMARK 465 SER A 114 REMARK 465 MET A 115 REMARK 465 GLY A 116 REMARK 465 SER A 117 REMARK 465 ARG A 118 REMARK 465 GLY A 119 REMARK 465 PHE A 120 REMARK 465 SER A 121 REMARK 465 VAL A 122 REMARK 465 PRO A 123 REMARK 465 GLU A 124 REMARK 465 ASP A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 127 REMARK 465 ASP A 128 REMARK 465 ARG A 129 REMARK 465 PRO A 130 REMARK 465 VAL A 131 REMARK 465 GLY A 132 REMARK 465 TYR A 133 REMARK 465 LEU A 134 REMARK 465 LEU A 135 REMARK 465 ILE A 136 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 SER A 139 REMARK 465 ALA A 140 REMARK 465 SER A 141 REMARK 465 THR A 142 REMARK 465 PRO A 143 REMARK 465 ALA A 144 REMARK 465 ILE A 145 REMARK 465 ASN A 146 REMARK 465 GLY A 147 REMARK 465 ILE A 148 REMARK 465 ILE A 149 REMARK 465 GLU A 150 REMARK 465 VAL A 151 REMARK 465 VAL A 152 REMARK 465 PRO A 153 REMARK 465 HIS A 154 REMARK 465 ASP A 155 REMARK 465 ILE A 156 REMARK 465 PRO A 157 REMARK 465 ILE A 158 REMARK 465 GLU A 159 REMARK 465 LEU A 160 REMARK 465 TYR A 161 REMARK 465 LEU A 162 REMARK 465 GLU A 163 REMARK 465 GLN A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 ASP A 167 REMARK 465 ASP A 168 REMARK 465 ASP A 169 REMARK 465 VAL A 170 REMARK 465 LEU A 171 REMARK 465 ILE A 172 REMARK 465 PRO A 173 REMARK 465 LEU A 174 REMARK 465 ALA A 175 REMARK 465 GLU A 176 REMARK 465 HIS A 177 REMARK 465 PRO A 178 REMARK 465 ARG A 179 REMARK 465 LEU A 180 REMARK 465 ARG A 181 REMARK 465 VAL A 182 REMARK 465 HIS A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 ARG A 187 REMARK 465 ASP A 188 REMARK 465 ASP A 189 REMARK 465 ALA A 190 REMARK 465 SER A 191 REMARK 465 SER A 192 REMARK 465 LEU A 193 REMARK 465 ALA A 194 REMARK 465 ALA A 195 REMARK 465 ALA A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 ASP A 201 REMARK 465 TRP A 202 REMARK 465 SER A 203 REMARK 465 ASN A 204 REMARK 465 TRP A 205 REMARK 465 TYR A 206 REMARK 465 CYS A 207 REMARK 465 TRP A 208 REMARK 465 ALA A 209 REMARK 465 GLY A 210 REMARK 465 PRO A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 GLY A 214 REMARK 465 ALA A 215 REMARK 465 LEU A 216 REMARK 465 LYS A 217 REMARK 465 GLN A 218 REMARK 465 VAL A 219 REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 ARG A 222 REMARK 465 LEU A 223 REMARK 465 ARG A 224 REMARK 465 ASP A 225 REMARK 465 GLU A 226 REMARK 465 PHE A 227 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 PRO A 230 REMARK 465 LYS A 231 REMARK 465 ARG A 232 REMARK 465 GLU A 233 REMARK 465 VAL A 234 REMARK 465 TYR A 235 REMARK 465 ALA A 236 REMARK 465 GLN A 237 REMARK 465 ALA A 238 REMARK 465 TYR A 239 REMARK 465 TRP A 240 REMARK 465 THR A 241 REMARK 465 GLU A 242 REMARK 465 GLY A 243 REMARK 465 ARG A 244 REMARK 465 ALA A 245 REMARK 465 MET A 246 REMARK 465 GLY A 247 REMARK 465 SER A 248 REMARK 465 SER A 249 REMARK 465 ARG A 250 REMARK 465 GLY A 251 REMARK 465 GLU A 252 REMARK 465 THR A 253 REMARK 465 SER A 254 REMARK 465 THR A 255 REMARK 465 PRO A 256 REMARK 465 ALA A 257 REMARK 465 LYS A 258 REMARK 465 PRO A 259 REMARK 465 ALA A 260 REMARK 465 ALA A 261 REMARK 465 LYS A 262 REMARK 465 THR A 263 REMARK 465 ALA A 264 REMARK 465 PRO A 265 REMARK 465 ALA A 266 REMARK 465 LYS A 267 REMARK 465 ALA A 268 REMARK 465 ALA A 269 REMARK 465 ALA A 270 REMARK 465 LYS A 271 REMARK 465 PRO A 272 REMARK 465 ALA A 273 REMARK 465 ALA A 274 REMARK 465 ALA A 275 REMARK 465 SER A 276 REMARK 465 GLY A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 THR A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 HIS A 283 REMARK 465 ALA A 284 REMARK 465 ALA A 285 REMARK 465 ALA A 286 REMARK 465 PRO A 287 REMARK 465 ALA A 288 REMARK 465 ALA A 289 REMARK 465 ALA A 290 REMARK 465 THR A 291 REMARK 465 THR A 292 REMARK 465 GLY A 293 REMARK 465 ALA A 294 REMARK 465 PRO A 295 REMARK 465 GLN A 296 REMARK 465 ALA A 297 REMARK 465 ALA A 298 REMARK 465 PRO A 299 REMARK 465 ALA A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 ALA A 303 REMARK 465 ALA A 304 REMARK 465 GLN A 305 REMARK 465 PRO A 306 REMARK 465 ARG A 307 REMARK 465 THR A 308 REMARK 465 PRO A 309 REMARK 465 VAL A 310 REMARK 465 ARG A 311 REMARK 465 GLY A 312 REMARK 465 ARG A 313 REMARK 465 TRP A 314 REMARK 465 ARG A 315 REMARK 465 ALA A 316 REMARK 465 GLU A 317 REMARK 465 GLY A 637 REMARK 465 GLN A 638 REMARK 465 ALA A 639 REMARK 465 GLY A 640 REMARK 465 THR A 641 REMARK 465 ASP A 642 REMARK 465 HIS A 643 REMARK 465 ALA A 644 REMARK 465 SER A 645 REMARK 465 GLY A 646 REMARK 465 ASP A 647 REMARK 465 GLN A 648 REMARK 465 ALA A 649 REMARK 465 TYR A 890 REMARK 465 SER A 891 REMARK 465 SER A 892 REMARK 465 PRO A 893 REMARK 465 ASP A 894 REMARK 465 ALA A 895 REMARK 465 GLY A 896 REMARK 465 ARG A 897 REMARK 465 PRO A 898 REMARK 465 VAL A 899 REMARK 465 SER A 900 REMARK 465 ALA A 901 REMARK 465 ASP A 902 REMARK 465 ALA A 903 REMARK 465 VAL A 904 REMARK 465 GLU A 905 REMARK 465 VAL A 906 REMARK 465 GLY A 907 REMARK 465 ARG A 908 REMARK 465 MET B 1 REMARK 465 GLN B 565 REMARK 465 GLN B 566 REMARK 465 GLN B 567 REMARK 465 ALA B 568 REMARK 465 ALA B 569 REMARK 465 SER B 570 REMARK 465 GLU B 571 REMARK 465 TRP B 572 REMARK 465 ALA B 573 REMARK 465 ILE B 574 REMARK 465 GLY B 575 REMARK 465 SER B 576 REMARK 465 THR B 577 REMARK 465 ALA B 578 REMARK 465 ARG B 579 REMARK 465 ALA B 580 REMARK 465 LEU B 581 REMARK 465 GLU B 582 REMARK 465 VAL B 583 REMARK 465 LEU B 584 REMARK 465 PHE B 585 REMARK 465 GLN B 586 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 366 O1G AOV B 601 2.07 REMARK 500 O PRO B 356 OG1 THR B 518 2.08 REMARK 500 O ARG B 525 OG SER B 528 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 326 33.19 -96.61 REMARK 500 ARG B 320 14.87 -140.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 393 NE2 REMARK 620 2 HIS A 439 NE2 100.6 REMARK 620 3 HIS A 444 NE2 77.9 97.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 694 OG REMARK 620 2 GLN A 735 OE1 116.7 REMARK 620 3 AOV A1001 O1B 82.0 160.5 REMARK 620 4 AOV A1001 O1G 89.8 103.3 80.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 371 OG1 REMARK 620 2 GLN B 412 OE1 96.1 REMARK 620 3 AOV B 601 O1B 101.4 151.1 REMARK 620 4 AOV B 601 O2B 71.8 110.8 55.0 REMARK 620 5 AOV B 601 O3B 128.9 98.0 53.2 57.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TEJ RELATED DB: PDB REMARK 900 RELATED ID: EMD-10319 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-50977 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF IRTAB IN OUTWARD-OCCLUDED STATE IN NANODISC IN REMARK 900 COMPLEX WITH ADP-VANADATE DBREF 9G2K A 10 908 UNP G7CBF5 IRTA_MYCT3 10 908 DBREF 9G2K B 1 579 UNP G7CBF6 IRTB_MYCT3 1 579 SEQADV 9G2K SER A 9 UNP G7CBF5 EXPRESSION TAG SEQADV 9G2K ALA B 580 UNP G7CBF6 EXPRESSION TAG SEQADV 9G2K LEU B 581 UNP G7CBF6 EXPRESSION TAG SEQADV 9G2K GLU B 582 UNP G7CBF6 EXPRESSION TAG SEQADV 9G2K VAL B 583 UNP G7CBF6 EXPRESSION TAG SEQADV 9G2K LEU B 584 UNP G7CBF6 EXPRESSION TAG SEQADV 9G2K PHE B 585 UNP G7CBF6 EXPRESSION TAG SEQADV 9G2K GLN B 586 UNP G7CBF6 EXPRESSION TAG SEQRES 1 A 900 SER LEU ARG GLY LEU GLY ALA ARG ASP HIS GLN ALA THR SEQRES 2 A 900 VAL VAL ASP LYS GLU TYR ILE ALA PRO HIS PHE VAL ARG SEQRES 3 A 900 VAL ARG LEU VAL SER PRO THR LEU PHE ASP GLU VAL ILE SEQRES 4 A 900 VAL GLU PRO THR SER TRP LEU ARG PHE TRP PHE PRO ASP SEQRES 5 A 900 PRO ASP GLY SER ASP THR GLU PHE GLN ARG ALA TYR THR SEQRES 6 A 900 ILE THR GLU SER ASP PRO GLU THR GLY ARG PHE ALA VAL SEQRES 7 A 900 ASP MET VAL LEU HIS GLU PRO ALA GLY PRO ALA SER THR SEQRES 8 A 900 TRP ALA ARG THR VAL GLU PRO GLY ALA THR ILE ALA VAL SEQRES 9 A 900 MET SER MET GLY SER ARG GLY PHE SER VAL PRO GLU ASP SEQRES 10 A 900 PRO GLU ASP ARG PRO VAL GLY TYR LEU LEU ILE GLY ASP SEQRES 11 A 900 SER ALA SER THR PRO ALA ILE ASN GLY ILE ILE GLU VAL SEQRES 12 A 900 VAL PRO HIS ASP ILE PRO ILE GLU LEU TYR LEU GLU GLN SEQRES 13 A 900 HIS HIS ASP ASP ASP VAL LEU ILE PRO LEU ALA GLU HIS SEQRES 14 A 900 PRO ARG LEU ARG VAL HIS ARG VAL SER ARG ASP ASP ALA SEQRES 15 A 900 SER SER LEU ALA ALA ALA LEU GLU LEU ARG ASP TRP SER SEQRES 16 A 900 ASN TRP TYR CYS TRP ALA GLY PRO GLU ALA GLY ALA LEU SEQRES 17 A 900 LYS GLN VAL ARG THR ARG LEU ARG ASP GLU PHE GLY PHE SEQRES 18 A 900 PRO LYS ARG GLU VAL TYR ALA GLN ALA TYR TRP THR GLU SEQRES 19 A 900 GLY ARG ALA MET GLY SER SER ARG GLY GLU THR SER THR SEQRES 20 A 900 PRO ALA LYS PRO ALA ALA LYS THR ALA PRO ALA LYS ALA SEQRES 21 A 900 ALA ALA LYS PRO ALA ALA ALA SER GLY ALA GLY THR PRO SEQRES 22 A 900 GLU HIS ALA ALA ALA PRO ALA ALA ALA THR THR GLY ALA SEQRES 23 A 900 PRO GLN ALA ALA PRO ALA PRO GLY ALA ALA GLN PRO ARG SEQRES 24 A 900 THR PRO VAL ARG GLY ARG TRP ARG ALA GLU ALA GLY SER SEQRES 25 A 900 ARG LEU LEU ALA PRO LEU LYS LYS PRO LEU ILE VAL SER SEQRES 26 A 900 GLY VAL LEU GLN ALA LEU ILE THR LEU ILE GLU LEU ALA SEQRES 27 A 900 PRO PHE VAL LEU LEU VAL GLU LEU ALA ARG LEU LEU LEU SEQRES 28 A 900 GLY GLY ALA GLU ALA GLU ARG LEU TRP THR LEU GLY LEU SEQRES 29 A 900 THR ALA VAL SER LEU ILE GLY LEU GLY ALA VAL LEU ALA SEQRES 30 A 900 ALA ALA MET THR LEU TRP LEU HIS ARG VAL ASP ALA ARG SEQRES 31 A 900 PHE ALA HIS GLU LEU ARG GLY ARG LEU LEU THR LYS LEU SEQRES 32 A 900 SER ARG LEU PRO LEU GLY TRP PHE THR ARG ARG GLY SER SEQRES 33 A 900 ALA SER THR LYS GLN LEU VAL GLN ASP ASP THR LEU ALA SEQRES 34 A 900 LEU HIS TYR LEU ILE THR HIS ALA ILE PRO ASP ALA VAL SEQRES 35 A 900 ALA ALA VAL VAL ALA PRO VAL ALA VAL LEU VAL TYR LEU SEQRES 36 A 900 PHE VAL ALA ASP TRP ARG VAL ALA LEU VAL LEU PHE ILE SEQRES 37 A 900 PRO VAL LEU VAL TYR LEU VAL LEU MET SER VAL MET THR SEQRES 38 A 900 ILE GLN SER GLY SER LYS ILE ALA GLN ALA PRO ARG TRP SEQRES 39 A 900 ALA GLU ARG MET GLY GLY GLU ALA GLY ALA PHE LEU GLU SEQRES 40 A 900 GLY GLN PRO VAL ILE ARG ILE PHE GLY GLY ALA ALA ALA SEQRES 41 A 900 SER ARG PHE ARG ARG ARG LEU ASP ASP TYR ILE ASP PHE SEQRES 42 A 900 LEU VAL SER TRP GLN ARG PRO PHE VAL GLY LYS LYS THR SEQRES 43 A 900 LEU MET ASP LEU VAL THR ARG PRO ALA THR PHE LEU TRP SEQRES 44 A 900 ILE ILE LEU VAL ALA GLY VAL PRO LEU VAL VAL THR GLY SEQRES 45 A 900 ARG MET ASP PRO VAL ASN LEU LEU PRO PHE LEU LEU LEU SEQRES 46 A 900 GLY THR THR PHE GLY ALA ARG LEU LEU GLY ILE GLY TYR SEQRES 47 A 900 GLY LEU SER GLY ILE GLN THR GLY MET LEU ALA ALA ARG SEQRES 48 A 900 ARG ILE GLN THR VAL LEU ASP GLU PRO GLU LEU VAL VAL SEQRES 49 A 900 ARG ASP ARG THR GLY GLN ALA GLY THR ASP HIS ALA SER SEQRES 50 A 900 GLY ASP GLN ALA ARG PRO GLY THR VAL GLU LEU ASP ARG SEQRES 51 A 900 VAL SER PHE GLU TYR ARG PRO GLY VAL PRO VAL ILE ARG SEQRES 52 A 900 ASP VAL THR LEU THR LEU ARG PRO GLY THR VAL THR ALA SEQRES 53 A 900 LEU VAL GLY PRO SER GLY SER GLY LYS SER THR LEU ALA SEQRES 54 A 900 ALA LEU VAL ALA ARG PHE HIS ASP VAL THR GLN GLY ALA SEQRES 55 A 900 ILE ARG VAL ASP GLY ARG ASP ILE ARG THR LEU THR ALA SEQRES 56 A 900 ASP GLU LEU TYR ARG ARG VAL GLY PHE VAL LEU GLN ASP SEQRES 57 A 900 ALA GLN LEU VAL HIS GLY SER VAL ALA GLU ASN ILE ALA SEQRES 58 A 900 LEU ALA GLU PRO ASP ALA GLY LEU GLU ARG ILE ARG THR SEQRES 59 A 900 ALA ALA ARG ASP ALA GLN ILE HIS ASP ARG ILE THR ARG SEQRES 60 A 900 MET PRO ASP GLY TYR ASP SER VAL LEU GLY ALA GLY SER SEQRES 61 A 900 ALA LEU SER GLY GLY GLU ARG GLN ARG VAL THR ILE ALA SEQRES 62 A 900 ARG ALA ILE LEU ALA ASP THR PRO VAL LEU VAL LEU ASP SEQRES 63 A 900 GLU ALA THR ALA PHE ALA ASP PRO GLU SER GLU TYR LEU SEQRES 64 A 900 VAL GLN GLN ALA ILE ASN ARG LEU THR ARG ASP ARG THR SEQRES 65 A 900 VAL LEU VAL ILE ALA HIS ARG LEU HIS THR ILE THR HIS SEQRES 66 A 900 ALA ASP GLN ILE VAL VAL LEU ASP ASP GLY ARG ILE VAL SEQRES 67 A 900 GLU VAL GLY THR HIS ASP GLU LEU LEU ALA ALA GLY GLY SEQRES 68 A 900 ARG TYR ARG GLY LEU TRP ASP SER GLY ARG TYR SER SER SEQRES 69 A 900 PRO ASP ALA GLY ARG PRO VAL SER ALA ASP ALA VAL GLU SEQRES 70 A 900 VAL GLY ARG SEQRES 1 B 586 MET ILE ARG THR LEU LEU ARG LEU VAL PRO ALA GLU LYS SEQRES 2 B 586 ARG GLY ALA VAL ALA GLY TYR ALA VAL LEU THR LEU LEU SEQRES 3 B 586 SER VAL LEU LEU ARG ALA VAL GLY ALA VAL LEU LEU ILE SEQRES 4 B 586 PRO LEU LEU ALA ALA LEU PHE SER ASP THR PRO SER ASP SEQRES 5 B 586 ALA TRP LEU TRP LEU GLY TRP LEU THR ALA VAL THR LEU SEQRES 6 B 586 ALA GLY TRP VAL THR ASP THR ASN THR ALA ARG LEU GLY SEQRES 7 B 586 PHE ASP LEU GLY PHE ALA VAL LEU SER ARG THR GLN HIS SEQRES 8 B 586 ASP MET ALA ASP ARG LEU PRO ASN VAL ALA MET SER TRP SEQRES 9 B 586 PHE THR PRO ASP ASN THR ALA THR ALA ARG GLN ALA ILE SEQRES 10 B 586 ALA ALA THR GLY PRO GLU LEU ALA GLY LEU VAL VAL ASN SEQRES 11 B 586 LEU LEU THR PRO LEU ILE GLY ALA ALA LEU LEU PRO ALA SEQRES 12 B 586 ALA ILE GLY VAL ALA LEU LEU PHE VAL SER VAL PRO LEU SEQRES 13 B 586 GLY LEU ALA ALA LEU ALA GLY VAL ALA VAL LEU PHE GLY SEQRES 14 B 586 ALA LEU ALA LEU SER GLY ARG LEU SER ARG ALA ALA ASP SEQRES 15 B 586 LYS VAL ALA GLY GLU THR ASN SER ALA PHE THR GLU ARG SEQRES 16 B 586 ILE ILE GLU PHE ALA ARG THR GLN GLN ALA LEU ARG ALA SEQRES 17 B 586 ALA ARG ARG VAL GLU PRO ALA ARG SER GLN VAL GLY SER SEQRES 18 B 586 ALA LEU ALA ALA GLN HIS GLY ALA GLY LEU ARG LEU LEU SEQRES 19 B 586 THR MET GLN ILE PRO GLY GLN VAL LEU PHE SER LEU ALA SEQRES 20 B 586 GLY GLN VAL ALA LEU ILE GLY PHE ALA GLY MET ALA VAL SEQRES 21 B 586 TRP LEU THR VAL ARG GLY GLN LEU GLY VAL PRO GLU ALA SEQRES 22 B 586 ILE ALA LEU ILE VAL VAL LEU VAL ARG TYR LEU GLU PRO SEQRES 23 B 586 PHE ALA ALA ILE ALA ASP LEU ALA PRO ALA LEU GLU THR SEQRES 24 B 586 THR ARG ALA THR LEU ASN ARG ILE GLN ALA VAL LEU ASP SEQRES 25 B 586 ALA PRO THR LEU PRO ALA GLY ARG ARG ARG LEU ASP ARG SEQRES 26 B 586 THR GLY ALA ALA PRO SER ILE GLU PHE ASP ASP VAL ARG SEQRES 27 B 586 PHE SER TYR GLY ASP GLU VAL VAL LEU ASP GLY VAL SER SEQRES 28 B 586 PHE THR LEU ARG PRO GLY ASN THR THR ALA ILE VAL GLY SEQRES 29 B 586 PRO SER GLY SER GLY LYS THR THR ILE LEU SER LEU ILE SEQRES 30 B 586 ALA GLY LEU GLN GLN PRO ALA SER GLY ARG VAL LEU LEU SEQRES 31 B 586 ASP GLY VAL ASP VAL THR THR LEU ASP PRO GLU ALA ARG SEQRES 32 B 586 ARG ALA ALA VAL SER VAL VAL PHE GLN HIS PRO TYR LEU SEQRES 33 B 586 PHE ASP GLY THR LEU ARG ASP ASN VAL LEU VAL GLY ASP SEQRES 34 B 586 PRO GLU ALA ASP PRO ASP ASP VAL THR ALA ALA MET ARG SEQRES 35 B 586 LEU ALA ARG VAL ASP GLU LEU LEU ASP ARG LEU PRO ASP SEQRES 36 B 586 GLY ASP ALA THR VAL VAL GLY GLU GLY GLY THR ALA LEU SEQRES 37 B 586 SER GLY GLY GLU ARG GLN ARG VAL SER ILE ALA ARG ALA SEQRES 38 B 586 LEU LEU LYS PRO ALA PRO VAL LEU LEU VAL ASP GLU ALA SEQRES 39 B 586 THR SER ALA LEU ASP ASN ALA ASN GLU ALA ALA VAL VAL SEQRES 40 B 586 ASP ALA LEU THR ALA ASP PRO ARG PRO ARG THR ARG VAL SEQRES 41 B 586 ILE VAL ALA HIS ARG LEU ALA SER ILE ARG HIS ALA ASP SEQRES 42 B 586 ARG VAL LEU PHE VAL GLU ALA GLY ARG VAL VAL GLU ASP SEQRES 43 B 586 GLY ALA ILE ASP GLU LEU LEU ALA ALA GLY GLY ARG PHE SEQRES 44 B 586 ALA GLN PHE TRP ALA GLN GLN GLN ALA ALA SER GLU TRP SEQRES 45 B 586 ALA ILE GLY SER THR ALA ARG ALA LEU GLU VAL LEU PHE SEQRES 46 B 586 GLN HET AOV A1001 32 HET MG A1002 1 HET ZN A1003 1 HET AOV B 601 32 HET MG B 602 1 HETNAM AOV ADP ORTHOVANADATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 3 AOV 2(C10 H17 N5 O14 P2 V) FORMUL 4 MG 2(MG 2+) FORMUL 5 ZN ZN 2+ HELIX 1 AA1 ALA A 318 ALA A 324 1 7 HELIX 2 AA2 LEU A 326 GLY A 360 1 35 HELIX 3 AA3 GLU A 363 SER A 412 1 50 HELIX 4 AA4 PRO A 415 GLY A 423 1 9 HELIX 5 AA5 GLY A 423 GLN A 432 1 10 HELIX 6 AA6 GLN A 432 LEU A 438 1 7 HELIX 7 AA7 LEU A 438 HIS A 444 1 7 HELIX 8 AA8 HIS A 444 ASP A 467 1 24 HELIX 9 AA9 ASP A 467 VAL A 473 1 7 HELIX 10 AB1 LEU A 474 GLY A 516 1 43 HELIX 11 AB2 GLY A 516 PHE A 523 1 8 HELIX 12 AB3 SER A 529 THR A 560 1 32 HELIX 13 AB4 ARG A 561 THR A 579 1 19 HELIX 14 AB5 ASP A 583 ASN A 586 5 4 HELIX 15 AB6 LEU A 587 LEU A 593 1 7 HELIX 16 AB7 PHE A 597 ASP A 626 1 30 HELIX 17 AB8 GLY A 692 ARG A 702 1 11 HELIX 18 AB9 ARG A 719 LEU A 721 5 3 HELIX 19 AC1 THR A 722 ARG A 729 1 8 HELIX 20 AC2 SER A 743 ALA A 749 1 7 HELIX 21 AC3 GLY A 756 ALA A 767 1 12 HELIX 22 AC4 ILE A 769 MET A 776 1 8 HELIX 23 AC5 ASP A 778 SER A 782 5 5 HELIX 24 AC6 SER A 791 ASP A 807 1 17 HELIX 25 AC7 ASP A 821 THR A 836 1 16 HELIX 26 AC8 ARG A 847 ILE A 851 5 5 HELIX 27 AC9 THR A 870 GLY A 878 1 9 HELIX 28 AD1 GLY A 879 ARG A 889 1 11 HELIX 29 AD2 ARG B 3 VAL B 9 1 7 HELIX 30 AD3 LYS B 13 LEU B 37 1 25 HELIX 31 AD4 LEU B 37 PHE B 46 1 10 HELIX 32 AD5 THR B 49 SER B 51 5 3 HELIX 33 AD6 ASP B 52 LEU B 97 1 46 HELIX 34 AD7 PRO B 98 VAL B 100 5 3 HELIX 35 AD8 ALA B 101 PHE B 105 5 5 HELIX 36 AD9 THR B 106 ALA B 119 1 14 HELIX 37 AE1 GLY B 121 GLY B 126 1 6 HELIX 38 AE2 GLY B 126 LEU B 131 1 6 HELIX 39 AE3 LEU B 131 SER B 153 1 23 HELIX 40 AE4 SER B 153 THR B 202 1 50 HELIX 41 AE5 THR B 202 ARG B 210 1 9 HELIX 42 AE6 SER B 217 GLN B 237 1 21 HELIX 43 AE7 GLN B 237 ARG B 265 1 29 HELIX 44 AE8 GLY B 269 ASP B 312 1 44 HELIX 45 AE9 GLY B 369 GLY B 379 1 11 HELIX 46 AF1 THR B 396 LEU B 398 5 3 HELIX 47 AF2 ASP B 399 ALA B 406 1 8 HELIX 48 AF3 THR B 420 VAL B 427 1 8 HELIX 49 AF4 ASP B 433 ALA B 444 1 12 HELIX 50 AF5 ARG B 445 ASP B 451 1 7 HELIX 51 AF6 ASP B 455 THR B 459 5 5 HELIX 52 AF7 SER B 469 LYS B 484 1 16 HELIX 53 AF8 ASP B 499 ASP B 513 1 15 HELIX 54 AF9 ARG B 525 ILE B 529 5 5 HELIX 55 AG1 ALA B 548 GLY B 556 1 9 HELIX 56 AG2 GLY B 557 TRP B 563 1 7 SHEET 1 AA1 4 VAL A 667 LEU A 677 0 SHEET 2 AA1 4 VAL A 654 ARG A 664 -1 N VAL A 654 O LEU A 677 SHEET 3 AA1 4 GLN A 708 VAL A 713 -1 O ALA A 710 N ASP A 657 SHEET 4 AA1 4 ARG A 716 ASP A 717 -1 O ARG A 716 N VAL A 713 SHEET 1 AA2 6 VAL A 730 VAL A 733 0 SHEET 2 AA2 6 VAL A 810 ASP A 814 1 O VAL A 810 N GLY A 731 SHEET 3 AA2 6 THR A 840 ILE A 844 1 O THR A 840 N LEU A 811 SHEET 4 AA2 6 THR A 681 VAL A 686 1 N LEU A 685 O VAL A 843 SHEET 5 AA2 6 GLN A 856 ASP A 861 1 O VAL A 858 N ALA A 684 SHEET 6 AA2 6 ARG A 864 GLY A 869 -1 O GLY A 869 N ILE A 857 SHEET 1 AA3 4 GLU B 344 LEU B 354 0 SHEET 2 AA3 4 ILE B 332 TYR B 341 -1 N ILE B 332 O LEU B 354 SHEET 3 AA3 4 SER B 385 LEU B 390 -1 O SER B 385 N ARG B 338 SHEET 4 AA3 4 VAL B 393 ASP B 394 -1 O VAL B 393 N LEU B 390 SHEET 1 AA4 6 SER B 408 VAL B 410 0 SHEET 2 AA4 6 VAL B 488 ASP B 492 1 O VAL B 488 N SER B 408 SHEET 3 AA4 6 THR B 518 VAL B 522 1 O VAL B 522 N VAL B 491 SHEET 4 AA4 6 THR B 359 VAL B 363 1 N THR B 360 O ARG B 519 SHEET 5 AA4 6 ARG B 534 GLU B 539 1 O ARG B 534 N ALA B 361 SHEET 6 AA4 6 ARG B 542 GLY B 547 -1 O ARG B 542 N GLU B 539 LINK NE2 HIS A 393 ZN ZN A1003 1555 1555 2.30 LINK NE2 HIS A 439 ZN ZN A1003 1555 1555 2.30 LINK NE2 HIS A 444 ZN ZN A1003 1555 1555 2.30 LINK OG SER A 694 MG MG A1002 1555 1555 1.91 LINK OE1 GLN A 735 MG MG A1002 1555 1555 2.09 LINK O1B AOV A1001 MG MG A1002 1555 1555 2.00 LINK O1G AOV A1001 MG MG A1002 1555 1555 2.03 LINK OG1 THR B 371 MG MG B 602 1555 1555 2.03 LINK OE1 GLN B 412 MG MG B 602 1555 1555 1.95 LINK O1B AOV B 601 MG MG B 602 1555 1555 2.95 LINK O2B AOV B 601 MG MG B 602 1555 1555 1.94 LINK O3B AOV B 601 MG MG B 602 1555 1555 2.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000