HEADER VIRAL PROTEIN 23-JUL-24 9G8E TITLE N2 DOMAIN OF G3P FROM PHAGE FD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATTACHMENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE FD; SOURCE 3 ORGANISM_TAXID: 10864; SOURCE 4 GENE: JI57_00430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHAGE INFECTION CIS PROLINE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR U.WEININGER,R.P.JAKOB REVDAT 1 04-JUN-25 9G8E 0 JRNL AUTH U.WEININGER,M.VON DELBRUCK,F.X.SCHMID,R.P.JAKOB JRNL TITL PHI-VALUE AND NMR STRUCTURAL ANALYSIS OF A COUPLED JRNL TITL 2 NATIVE-STATE PROLYL ISOMERIZATION AND CONFORMATIONAL PROTEIN JRNL TITL 3 FOLDING PROCESS. JRNL REF BIOMOLECULES V. 15 2025 JRNL REFN ESSN 2218-273X JRNL PMID 40001562 JRNL DOI 10.3390/BIOM15020259 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292140428. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288.15 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 N2 DOMAIN OF G3P FROM PHAGE FD, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 2D 1H-1H REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 PRO A 105 HB1 ALA A 175 1.20 REMARK 500 HA PRO A 105 HE2 LYS A 174 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 TYR A 203 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 160 78.54 68.56 REMARK 500 1 GLU A 196 60.64 -67.99 REMARK 500 1 ASP A 197 156.51 173.39 REMARK 500 1 GLN A 204 35.31 -141.98 REMARK 500 2 ASP A 160 78.52 57.31 REMARK 500 2 ASP A 197 -169.35 73.71 REMARK 500 3 ASP A 160 77.86 57.81 REMARK 500 3 ASP A 197 165.46 178.01 REMARK 500 3 HIS A 208 30.28 -87.23 REMARK 500 4 ASP A 160 77.00 62.38 REMARK 500 4 ASP A 197 -166.42 171.72 REMARK 500 4 GLN A 204 9.44 -151.26 REMARK 500 4 HIS A 206 -8.85 69.89 REMARK 500 5 ASP A 160 77.54 57.79 REMARK 500 5 ASP A 197 158.83 72.98 REMARK 500 5 GLN A 204 -87.37 -139.67 REMARK 500 5 HIS A 207 -150.42 58.84 REMARK 500 5 HIS A 210 177.98 69.58 REMARK 500 6 ASP A 160 77.39 65.34 REMARK 500 6 PHE A 194 51.36 -147.04 REMARK 500 6 GLU A 196 72.11 -67.47 REMARK 500 6 ASP A 197 -151.29 173.26 REMARK 500 6 GLN A 204 72.75 -175.21 REMARK 500 6 HIS A 208 -177.85 -68.56 REMARK 500 7 PRO A 105 -14.87 -45.14 REMARK 500 7 ASP A 160 78.82 57.65 REMARK 500 7 GLU A 196 74.48 -61.85 REMARK 500 7 ASP A 197 -170.41 173.88 REMARK 500 7 GLN A 204 -62.67 -133.42 REMARK 500 7 HIS A 206 59.49 -112.50 REMARK 500 7 HIS A 207 178.96 64.44 REMARK 500 8 ASP A 160 77.14 62.37 REMARK 500 8 ASP A 197 171.86 169.03 REMARK 500 8 HIS A 208 -66.63 -174.36 REMARK 500 8 HIS A 209 93.24 64.55 REMARK 500 9 ASP A 160 78.42 57.73 REMARK 500 9 ASP A 197 169.60 74.97 REMARK 500 9 HIS A 209 -59.54 67.61 REMARK 500 10 ASP A 160 77.95 58.90 REMARK 500 10 ASP A 197 -173.86 175.37 REMARK 500 10 HIS A 209 -29.84 -172.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34939 RELATED DB: BMRB REMARK 900 N2 DOMAIN OF G3P FROM PHAGE FD DBREF1 9G8E A 102 205 UNP A0A0P9CK37_9GAMM DBREF2 9G8E A A0A0P9CK37 120 223 SEQADV 9G8E HIS A 129 UNP A0A0P9CK3 GLN 147 CONFLICT SEQADV 9G8E HIS A 206 UNP A0A0P9CK3 EXPRESSION TAG SEQADV 9G8E HIS A 207 UNP A0A0P9CK3 EXPRESSION TAG SEQADV 9G8E HIS A 208 UNP A0A0P9CK3 EXPRESSION TAG SEQADV 9G8E HIS A 209 UNP A0A0P9CK3 EXPRESSION TAG SEQADV 9G8E HIS A 210 UNP A0A0P9CK3 EXPRESSION TAG SEQADV 9G8E HIS A 211 UNP A0A0P9CK3 EXPRESSION TAG SEQRES 1 A 110 TYR ILE ASN PRO LEU ASP GLY THR TYR PRO PRO GLY THR SEQRES 2 A 110 GLU GLN ASN PRO ALA ASN PRO ASN PRO SER LEU GLU GLU SEQRES 3 A 110 SER HIS PRO LEU ASN THR PHE MET PHE GLN ASN ASN ARG SEQRES 4 A 110 PHE ARG ASN ARG GLN GLY ALA LEU THR VAL TYR THR GLY SEQRES 5 A 110 THR VAL THR GLN GLY THR ASP PRO VAL LYS THR TYR TYR SEQRES 6 A 110 GLN TYR THR PRO VAL SER SER LYS ALA MET TYR ASP ALA SEQRES 7 A 110 TYR TRP ASN GLY LYS PHE ARG ASP CYS ALA PHE HIS SER SEQRES 8 A 110 GLY PHE ASN GLU ASP LEU PHE VAL CYS GLU TYR GLN GLY SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER A 173 ASN A 182 1 10 SHEET 1 AA1 6 SER A 124 GLU A 126 0 SHEET 2 AA1 6 LYS A 163 PRO A 170 -1 O TYR A 166 N GLU A 126 SHEET 3 AA1 6 ALA A 147 GLN A 157 -1 N GLY A 153 O GLN A 167 SHEET 4 AA1 6 ASN A 139 ARG A 144 -1 N ARG A 142 O THR A 149 SHEET 5 AA1 6 PHE A 134 PHE A 136 -1 N PHE A 134 O PHE A 141 SHEET 6 AA1 6 PHE A 199 VAL A 200 1 O PHE A 199 N MET A 135 SSBOND 1 CYS A 188 CYS A 201 1555 1555 2.03 CISPEP 1 ASP A 160 PRO A 161 1 -6.96 CISPEP 2 ASP A 160 PRO A 161 2 -9.51 CISPEP 3 ASP A 160 PRO A 161 3 -6.76 CISPEP 4 ASP A 160 PRO A 161 4 -14.71 CISPEP 5 ASP A 160 PRO A 161 5 -13.29 CISPEP 6 ASP A 160 PRO A 161 6 -13.58 CISPEP 7 ASP A 160 PRO A 161 7 -5.86 CISPEP 8 ASP A 160 PRO A 161 8 -10.58 CISPEP 9 ASP A 160 PRO A 161 9 -6.12 CISPEP 10 ASP A 160 PRO A 161 10 -8.84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1715 HIS A 211 ENDMDL MODEL 2 TER 1715 HIS A 211 ENDMDL MODEL 3 TER 1715 HIS A 211 ENDMDL MODEL 4 TER 1715 HIS A 211 ENDMDL MODEL 5 TER 1715 HIS A 211 ENDMDL MODEL 6 TER 1715 HIS A 211 ENDMDL MODEL 7 TER 1715 HIS A 211 ENDMDL MODEL 8 TER 1715 HIS A 211 ENDMDL MODEL 9 TER 1715 HIS A 211 ENDMDL MODEL 10 TER 1715 HIS A 211 ENDMDL CONECT 1349 1541 CONECT 1541 1349 MASTER 164 0 0 1 6 0 0 6 901 1 2 9 END