HEADER DE NOVO PROTEIN 08-AUG-24 9GF2 TITLE CC-HEX-HEN2 VARIANT PEPTIDE WITH HENDECAD REPEAT SUBSTITUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CC-HEX2-HEN2; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS HENDECAD REPEAT, COILED-COILS, DE NOVO DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.W.KURGAN,F.J.O.MARTIN,D.N.WOOLFSON REVDAT 3 05-FEB-25 9GF2 1 JRNL REVDAT 2 29-JAN-25 9GF2 1 TITLE REVDAT 1 22-JAN-25 9GF2 0 JRNL AUTH K.W.KURGAN,F.J.O.MARTIN,W.M.DAWSON,T.BRUNNOCK,A.J.ORR-EWING, JRNL AUTH 2 D.N.WOOLFSON JRNL TITL EXCHANGE, PROMISCUITY, AND ORTHOGONALITY IN DE NOVO DESIGNED JRNL TITL 2 COILED-COIL PEPTIDE ASSEMBLIES. JRNL REF CHEM SCI V. 16 1826 2025 JRNL REFN ISSN 2041-6520 JRNL PMID 39720134 JRNL DOI 10.1039/D4SC06329E REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05600 REMARK 3 B22 (A**2) : -0.43300 REMARK 3 B33 (A**2) : 0.37700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1393 ; 0.019 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1522 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1846 ; 2.694 ; 1.830 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3543 ; 0.911 ; 1.791 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 184 ; 7.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;19.335 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1460 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 220 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 378 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 89 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 671 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 41 ; 0.221 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 754 ; 9.165 ; 4.853 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 753 ; 9.172 ; 4.850 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 932 ;11.806 ; 8.602 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 933 ;11.800 ; 8.605 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 639 ;10.345 ; 5.596 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 640 ;10.338 ; 5.595 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ;14.498 ; 9.862 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 915 ;14.490 ; 9.860 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 15 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 33 NULL REMARK 3 1 A 5 A 33 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 5 A 33 NULL REMARK 3 2 A 5 A 33 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 5 A 33 NULL REMARK 3 3 A 5 A 33 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 4 A 5 A 32 NULL REMARK 3 4 A 5 A 32 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 A 5 A 33 NULL REMARK 3 5 A 5 A 33 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 7 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 8 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 9 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 10 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 11 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 12 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 13 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 14 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 15 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9GF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292140838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 48.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.01100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.07100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.5, 25% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.07850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.62900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.07850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.62900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 4 REMARK 465 NH2 A 35 REMARK 465 ACE B 0 REMARK 465 NH2 B 35 REMARK 465 ACE C 0 REMARK 465 GLY C 1 REMARK 465 GLU C 2 REMARK 465 ILE C 3 REMARK 465 NH2 C 35 REMARK 465 ACE D 0 REMARK 465 GLY D 1 REMARK 465 GLU D 2 REMARK 465 ILE D 3 REMARK 465 NH2 D 35 REMARK 465 ACE E 0 REMARK 465 GLY E 1 REMARK 465 GLU E 2 REMARK 465 ILE E 3 REMARK 465 GLY E 34 REMARK 465 NH2 E 35 REMARK 465 ACE F 0 REMARK 465 NH2 F 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 SER D 6 OG REMARK 470 LYS D 12 CG CD CE NZ REMARK 470 LYS D 33 CG CD CE NZ REMARK 470 LYS E 8 CG CD CE NZ REMARK 470 LYS F 8 CG CD CE NZ REMARK 470 LYS F 12 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 26 OE1 GLU D 20 1.31 REMARK 500 HZ3 LYS B 26 OE1 GLU F 20 1.58 REMARK 500 NZ LYS A 26 OE1 GLU D 20 2.03 REMARK 500 NZ LYS B 26 OE1 GLU F 20 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 27 CD GLU C 27 OE1 -0.077 REMARK 500 SER F 24 CA SER F 24 CB 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 26 CD - CE - NZ ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU D 20 CB - CG - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 2 -61.90 -29.09 REMARK 500 SER D 6 -75.10 -153.97 REMARK 500 GLU D 9 -58.30 94.52 REMARK 500 GLU F 2 94.91 -55.55 REMARK 500 LYS F 5 -51.81 88.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 9GF2 A 0 35 PDB 9GF2 9GF2 0 35 DBREF 9GF2 B 0 35 PDB 9GF2 9GF2 0 35 DBREF 9GF2 C 0 35 PDB 9GF2 9GF2 0 35 DBREF 9GF2 D 0 35 PDB 9GF2 9GF2 0 35 DBREF 9GF2 E 0 35 PDB 9GF2 9GF2 0 35 DBREF 9GF2 F 0 35 PDB 9GF2 9GF2 0 35 SEQRES 1 A 36 ACE GLY GLU ILE ALA LYS SER LEU LYS GLU ILE ALA LYS SEQRES 2 A 36 SER ALA ALA ALA ALA LEU LYS GLU ILE ALA TRP SER LEU SEQRES 3 A 36 LYS GLU ILE ALA LYS SER LEU LYS GLY NH2 SEQRES 1 B 36 ACE GLY GLU ILE ALA LYS SER LEU LYS GLU ILE ALA LYS SEQRES 2 B 36 SER ALA ALA ALA ALA LEU LYS GLU ILE ALA TRP SER LEU SEQRES 3 B 36 LYS GLU ILE ALA LYS SER LEU LYS GLY NH2 SEQRES 1 C 36 ACE GLY GLU ILE ALA LYS SER LEU LYS GLU ILE ALA LYS SEQRES 2 C 36 SER ALA ALA ALA ALA LEU LYS GLU ILE ALA TRP SER LEU SEQRES 3 C 36 LYS GLU ILE ALA LYS SER LEU LYS GLY NH2 SEQRES 1 D 36 ACE GLY GLU ILE ALA LYS SER LEU LYS GLU ILE ALA LYS SEQRES 2 D 36 SER ALA ALA ALA ALA LEU LYS GLU ILE ALA TRP SER LEU SEQRES 3 D 36 LYS GLU ILE ALA LYS SER LEU LYS GLY NH2 SEQRES 1 E 36 ACE GLY GLU ILE ALA LYS SER LEU LYS GLU ILE ALA LYS SEQRES 2 E 36 SER ALA ALA ALA ALA LEU LYS GLU ILE ALA TRP SER LEU SEQRES 3 E 36 LYS GLU ILE ALA LYS SER LEU LYS GLY NH2 SEQRES 1 F 36 ACE GLY GLU ILE ALA LYS SER LEU LYS GLU ILE ALA LYS SEQRES 2 F 36 SER ALA ALA ALA ALA LEU LYS GLU ILE ALA TRP SER LEU SEQRES 3 F 36 LYS GLU ILE ALA LYS SER LEU LYS GLY NH2 HET 1PE B 101 38 HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *38(H2 O) HELIX 1 AA1 LEU A 7 GLY A 34 1 28 HELIX 2 AA2 GLU B 2 GLY B 34 1 33 HELIX 3 AA3 LYS C 5 LYS C 33 1 29 HELIX 4 AA4 GLU D 9 GLY D 34 1 26 HELIX 5 AA5 SER E 6 LYS E 33 1 28 HELIX 6 AA6 LYS F 5 GLY F 34 1 30 CRYST1 48.563 58.157 59.258 90.00 90.00 90.00 P 2 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016875 0.00000 TER 465 GLY A 34 TER 988 GLY B 34 TER 1476 GLY C 34 TER 1936 GLY D 34 TER 2404 LYS E 33 TER 2907 GLY F 34 HETATM 2908 OH2 1PE B 101 7.295 11.203 10.061 1.00 50.00 O HETATM 2909 C12 1PE B 101 6.106 10.547 10.377 1.00 45.12 C HETATM 2910 C22 1PE B 101 4.917 11.201 9.839 1.00 33.79 C HETATM 2911 OH3 1PE B 101 3.801 10.742 10.546 1.00 29.12 O HETATM 2912 C13 1PE B 101 1.505 10.640 10.831 1.00 38.21 C HETATM 2913 C23 1PE B 101 2.573 11.273 10.155 1.00 29.97 C HETATM 2914 OH4 1PE B 101 0.298 11.163 10.311 1.00 38.52 O HETATM 2915 C14 1PE B 101 -2.000 10.909 10.376 1.00 40.94 C HETATM 2916 C24 1PE B 101 -0.823 11.075 11.174 1.00 36.82 C HETATM 2917 OH5 1PE B 101 -3.081 11.181 11.227 1.00 48.57 O HETATM 2918 C15 1PE B 101 -5.412 11.425 11.513 1.00 47.52 C HETATM 2919 C25 1PE B 101 -4.342 11.059 10.581 1.00 51.09 C HETATM 2920 OH6 1PE B 101 -6.629 10.912 11.024 1.00 49.71 O HETATM 2921 C16 1PE B 101 -8.942 11.197 10.783 1.00 53.69 C HETATM 2922 C26 1PE B 101 -7.776 11.533 11.573 1.00 44.91 C HETATM 2923 OH7 1PE B 101 -10.061 11.008 11.581 1.00 59.07 O HETATM 2924 HO2 1PE B 101 7.797 10.845 10.455 0.00 48.72 H HETATM 2925 H121 1PE B 101 6.026 10.492 11.352 1.00 43.07 H HETATM 2926 H122 1PE B 101 6.150 9.633 10.026 1.00 43.15 H HETATM 2927 H221 1PE B 101 4.819 10.990 8.885 1.00 34.84 H HETATM 2928 H222 1PE B 101 4.996 12.175 9.936 1.00 34.86 H HETATM 2929 H131 1PE B 101 1.564 10.817 11.794 1.00 36.10 H HETATM 2930 H132 1PE B 101 1.543 9.672 10.685 1.00 36.08 H HETATM 2931 H231 1PE B 101 2.460 11.158 9.186 1.00 31.59 H HETATM 2932 H232 1PE B 101 2.558 12.235 10.350 1.00 31.50 H HETATM 2933 H141 1PE B 101 -2.056 9.991 10.032 1.00 41.64 H HETATM 2934 H142 1PE B 101 -1.993 11.535 9.619 1.00 41.66 H HETATM 2935 H241 1PE B 101 -0.895 11.892 11.714 1.00 38.21 H HETATM 2936 H242 1PE B 101 -0.721 10.309 11.781 1.00 38.15 H HETATM 2937 H151 1PE B 101 -5.465 12.403 11.592 1.00 48.81 H HETATM 2938 H152 1PE B 101 -5.225 11.051 12.402 1.00 48.83 H HETATM 2939 H251 1PE B 101 -4.470 10.134 10.276 1.00 49.57 H HETATM 2940 H252 1PE B 101 -4.371 11.649 9.796 1.00 49.53 H HETATM 2941 H161 1PE B 101 -8.768 10.376 10.277 1.00 52.62 H HETATM 2942 H162 1PE B 101 -9.121 11.919 10.145 1.00 52.64 H HETATM 2943 H261 1PE B 101 -7.655 12.508 11.581 1.00 47.98 H HETATM 2944 H262 1PE B 101 -7.903 11.232 12.499 1.00 48.03 H HETATM 2945 HO7 1PE B 101 -10.743 10.807 11.020 0.00 60.22 H HETATM 2946 O HOH A 101 3.979 16.847 2.163 1.00 32.92 O HETATM 2947 O HOH A 102 -2.545 29.749 8.633 1.00 53.63 O HETATM 2948 O HOH A 103 0.060 19.455 2.095 1.00 40.17 O HETATM 2949 O HOH A 104 7.691 23.390 6.589 1.00 35.79 O HETATM 2950 O HOH A 105 3.733 20.133 1.594 1.00 35.24 O HETATM 2951 O HOH A 106 5.281 24.039 8.085 1.00 42.39 O HETATM 2952 O HOH B 201 9.599 10.983 10.336 1.00 46.87 O HETATM 2953 O HOH B 202 -5.245 2.902 16.512 1.00 34.17 O HETATM 2954 O HOH B 203 4.726 5.314 18.759 1.00 31.07 O HETATM 2955 O HOH B 204 -2.050 -1.669 9.428 1.00 36.29 O HETATM 2956 O HOH B 205 0.711 2.618 19.318 1.00 32.14 O HETATM 2957 O HOH B 206 7.694 -1.563 14.343 1.00 25.92 O HETATM 2958 O HOH B 207 5.847 -2.210 12.889 1.00 40.65 O HETATM 2959 O HOH B 208 4.451 1.954 19.204 1.00 36.73 O HETATM 2960 O HOH B 209 -4.624 1.315 18.338 1.00 46.90 O HETATM 2961 O HOH C 101 8.543 8.168 22.628 1.00 37.51 O HETATM 2962 O HOH C 102 2.062 8.211 24.475 1.00 43.34 O HETATM 2963 O HOH C 103 14.388 18.202 19.293 1.00 46.85 O HETATM 2964 O HOH C 104 6.483 6.597 22.746 1.00 39.12 O HETATM 2965 O HOH C 105 -1.106 3.584 21.241 1.00 32.58 O HETATM 2966 O HOH C 106 -3.259 2.195 20.591 1.00 52.08 O HETATM 2967 O HOH C 107 -0.158 3.201 23.692 1.00 43.12 O HETATM 2968 O HOH D 101 -3.951 21.251 27.871 1.00 48.87 O HETATM 2969 O HOH D 102 4.503 20.881 11.298 1.00 32.43 O HETATM 2970 O HOH D 103 8.698 20.245 18.874 1.00 34.45 O HETATM 2971 O HOH D 104 -7.548 21.054 19.824 1.00 51.18 O HETATM 2972 O HOH D 105 -1.588 21.889 26.273 1.00 46.28 O HETATM 2973 O HOH E 101 -0.439 8.168 -1.112 1.00 36.05 O HETATM 2974 O HOH E 102 -2.331 18.710 0.006 1.00 47.01 O HETATM 2975 O HOH E 103 4.011 6.918 1.317 1.00 41.08 O HETATM 2976 O HOH E 104 6.999 13.825 -2.466 1.00 34.09 O HETATM 2977 O HOH F 101 4.326 1.221 9.464 1.00 29.11 O HETATM 2978 O HOH F 102 -6.102 10.669 0.994 1.00 43.58 O HETATM 2979 O HOH F 103 -14.693 11.362 1.129 1.00 74.65 O HETATM 2980 O HOH F 104 4.032 -0.831 6.841 1.00 37.83 O HETATM 2981 O HOH F 105 36.031 6.201 9.420 1.00 57.52 O HETATM 2982 O HOH F 106 0.095 -0.581 7.627 1.00 35.62 O HETATM 2983 O HOH F 107 -9.873 1.682 3.324 1.00 48.51 O CONECT 2908 2909 2924 CONECT 2909 2908 2910 2925 2926 CONECT 2910 2909 2911 2927 2928 CONECT 2911 2910 2913 CONECT 2912 2913 2914 2929 2930 CONECT 2913 2911 2912 2931 2932 CONECT 2914 2912 2916 CONECT 2915 2916 2917 2933 2934 CONECT 2916 2914 2915 2935 2936 CONECT 2917 2915 2919 CONECT 2918 2919 2920 2937 2938 CONECT 2919 2917 2918 2939 2940 CONECT 2920 2918 2922 CONECT 2921 2922 2923 2941 2942 CONECT 2922 2920 2921 2943 2944 CONECT 2923 2921 2945 CONECT 2924 2908 CONECT 2925 2909 CONECT 2926 2909 CONECT 2927 2910 CONECT 2928 2910 CONECT 2929 2912 CONECT 2930 2912 CONECT 2931 2913 CONECT 2932 2913 CONECT 2933 2915 CONECT 2934 2915 CONECT 2935 2916 CONECT 2936 2916 CONECT 2937 2918 CONECT 2938 2918 CONECT 2939 2919 CONECT 2940 2919 CONECT 2941 2921 CONECT 2942 2921 CONECT 2943 2922 CONECT 2944 2922 CONECT 2945 2923 MASTER 457 0 1 6 0 0 0 6 1426 6 38 18 END