HEADER PROTEIN FIBRIL 12-AUG-24 9GG0 TITLE P301L TAU FILAMENTS FROM HUMAN BRAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM TAU-D OF MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN,PAIRED HELICAL FILAMENT-TAU, COMPND 5 PHF-TAU; COMPND 6 OTHER_DETAILS: P301L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN KEYWDS P301L TAU, FRONTOTEMPORAL DEMENTIA AND PARKINSONISM LINKED TO KEYWDS 2 CHROMOSOME 17, ELECTRON CRYO-MICROSCOPY, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR M.SCHWEIGHAUSER,Y.SHI,A.G.MURZIN,H.J.GARRINGER,R.VIDAL,J.R.MURRELL, AUTHOR 2 M.E.ERRO,H.SEELAAR,I.FERRER,J.C.VAN SWIETEN,B.GHETTI,S.H.W.SCHERES, AUTHOR 3 M.GOEDERT REVDAT 1 11-SEP-24 9GG0 0 JRNL AUTH M.SCHWEIGHAUSER,Y.SHI,A.G.MURZIN,H.J.GARRINGER,R.VIDAL, JRNL AUTH 2 J.R.MURRELL,M.E.ERRO,H.SEELAAR,I.FERRER,J.C.VAN SWIETEN, JRNL AUTH 3 B.GHETTI,S.H.W.SCHERES,M.GOEDERT JRNL TITL NOVEL TAU FILAMENT FOLDS IN INDIVIDUALS WITH MAPT MUTATIONS JRNL TITL 2 P301L AND P301T. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 39185206 JRNL DOI 10.1101/2024.08.15.608062 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.810 REMARK 3 NUMBER OF PARTICLES : 68559 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9GG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292140940. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : P301L TAU PROTEIN FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : P301L TAU FILAMENTS EXTRACTED REMARK 245 FROM THE BRAIN OF AN INDIVIDUAL WITH FRONTOTEMPORAL DEMENTIA. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 281 -83.52 -111.81 REMARK 500 LEU A 282 56.75 -117.03 REMARK 500 LYS A 347 66.18 -104.50 REMARK 500 LYS B 281 -83.53 -111.82 REMARK 500 LEU B 282 56.70 -117.03 REMARK 500 LYS B 347 66.20 -104.48 REMARK 500 LYS C 281 -83.56 -111.79 REMARK 500 LEU C 282 56.74 -117.00 REMARK 500 LYS C 347 66.16 -104.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-51319 RELATED DB: EMDB REMARK 900 P301L TAU FILAMENTS FROM HUMAN BRAIN DBREF 9GG0 A 271 377 UNP P10636 TAU_HUMAN 213 319 DBREF 9GG0 B 271 377 UNP P10636 TAU_HUMAN 213 319 DBREF 9GG0 C 271 377 UNP P10636 TAU_HUMAN 213 319 SEQADV 9GG0 LEU A 301 UNP P10636 PRO 243 VARIANT SEQADV 9GG0 LEU B 301 UNP P10636 PRO 243 VARIANT SEQADV 9GG0 LEU C 301 UNP P10636 PRO 243 VARIANT SEQRES 1 A 107 GLY GLY GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP SEQRES 2 A 107 LEU SER ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN SEQRES 3 A 107 ILE LYS HIS VAL LEU GLY GLY GLY SER VAL GLN ILE VAL SEQRES 4 A 107 TYR LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS SEQRES 5 A 107 GLY SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY SEQRES 6 A 107 GLN VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP SEQRES 7 A 107 ARG VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR SEQRES 8 A 107 HIS VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS SEQRES 9 A 107 LYS LEU THR SEQRES 1 B 107 GLY GLY GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP SEQRES 2 B 107 LEU SER ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN SEQRES 3 B 107 ILE LYS HIS VAL LEU GLY GLY GLY SER VAL GLN ILE VAL SEQRES 4 B 107 TYR LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS SEQRES 5 B 107 GLY SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY SEQRES 6 B 107 GLN VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP SEQRES 7 B 107 ARG VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR SEQRES 8 B 107 HIS VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS SEQRES 9 B 107 LYS LEU THR SEQRES 1 C 107 GLY GLY GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP SEQRES 2 C 107 LEU SER ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN SEQRES 3 C 107 ILE LYS HIS VAL LEU GLY GLY GLY SER VAL GLN ILE VAL SEQRES 4 C 107 TYR LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS SEQRES 5 C 107 GLY SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY SEQRES 6 C 107 GLN VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP SEQRES 7 C 107 ARG VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR SEQRES 8 C 107 HIS VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS SEQRES 9 C 107 LYS LEU THR SHEET 1 AA1 3 LYS B 274 LYS B 280 0 SHEET 2 AA1 3 LYS A 274 LYS A 280 1 N GLN A 276 O VAL B 275 SHEET 3 AA1 3 LYS C 274 LYS C 280 1 O GLN C 276 N VAL A 275 SHEET 1 AA2 3 LEU B 284 SER B 289 0 SHEET 2 AA2 3 LEU A 284 SER A 289 1 N VAL A 287 O ASN B 286 SHEET 3 AA2 3 LEU C 284 SER C 289 1 O VAL C 287 N ASN A 286 SHEET 1 AA3 3 ASN B 296 LEU B 301 0 SHEET 2 AA3 3 ASN A 296 LEU A 301 1 N LEU A 301 O VAL B 300 SHEET 3 AA3 3 ASN C 296 LEU C 301 1 O LEU C 301 N VAL A 300 SHEET 1 AA4 3 VAL B 306 TYR B 310 0 SHEET 2 AA4 3 VAL A 306 TYR A 310 1 N VAL A 309 O TYR B 310 SHEET 3 AA4 3 VAL C 306 TYR C 310 1 O VAL C 309 N TYR A 310 SHEET 1 AA5 3 VAL B 313 ASP B 314 0 SHEET 2 AA5 3 VAL A 313 ASP A 314 1 N VAL A 313 O ASP B 314 SHEET 3 AA5 3 VAL C 313 ASP C 314 1 O VAL C 313 N ASP A 314 SHEET 1 AA6 3 LYS B 317 LYS B 321 0 SHEET 2 AA6 3 LYS A 317 LYS A 321 1 N THR A 319 O VAL B 318 SHEET 3 AA6 3 LYS C 317 LYS C 321 1 O THR C 319 N VAL A 318 SHEET 1 AA7 3 SER B 324 LEU B 325 0 SHEET 2 AA7 3 SER A 324 LEU A 325 1 N SER A 324 O LEU B 325 SHEET 3 AA7 3 SER C 324 LEU C 325 1 O SER C 324 N LEU A 325 SHEET 1 AA8 3 ILE B 328 HIS B 330 0 SHEET 2 AA8 3 ILE A 328 HIS A 330 1 N HIS A 329 O ILE B 328 SHEET 3 AA8 3 ILE C 328 HIS C 330 1 O HIS C 329 N ILE A 328 SHEET 1 AA9 3 GLN B 336 SER B 341 0 SHEET 2 AA9 3 GLN A 336 SER A 341 1 N GLU A 338 O VAL B 339 SHEET 3 AA9 3 GLN C 336 SER C 341 1 O GLU C 338 N VAL A 339 SHEET 1 AB1 3 LEU B 344 PHE B 346 0 SHEET 2 AB1 3 LEU A 344 PHE A 346 1 N ASP A 345 O PHE B 346 SHEET 3 AB1 3 LEU C 344 PHE C 346 1 O ASP C 345 N PHE A 346 SHEET 1 AB2 3 ARG B 349 ILE B 354 0 SHEET 2 AB2 3 ARG A 349 ILE A 354 1 N GLN A 351 O VAL B 350 SHEET 3 AB2 3 ARG C 349 ILE C 354 1 O GLN C 351 N VAL A 350 SHEET 1 AB3 3 LYS B 369 LEU B 376 0 SHEET 2 AB3 3 LYS A 369 LEU A 376 1 N ILE A 371 O LYS B 370 SHEET 3 AB3 3 LYS C 369 LEU C 376 1 O ILE C 371 N LYS A 370 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000