HEADER PROTEIN FIBRIL 12-AUG-24 9GG1 TITLE P301T TYPE I TAU FILAMENTS FROM HUMAN BRAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM TAU-D OF MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN,PAIRED HELICAL FILAMENT-TAU, COMPND 5 PHF-TAU SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 TISSUE: FRONTAL CORTEX KEYWDS P301T TAU, FRONTOTEMPORAL DEMENTIA AND PARKINSONISM LINKED TO KEYWDS 2 CHROMOSOME 17, ELECTRON CRYO-MICROSCOPY, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR M.SCHWEIGHAUSER,Y.SHI,A.G.MURZIN,H.J.GARRINGER,R.VIDAL,J.R.MURRELL, AUTHOR 2 M.E.ERRO,H.SEELAAR,I.FERRER,J.C.VAN SWIETEN,B.GHETTI,S.H.W.SCHERES, AUTHOR 3 M.GOEDERT REVDAT 1 11-SEP-24 9GG1 0 JRNL AUTH M.SCHWEIGHAUSER,Y.SHI,A.G.MURZIN,H.J.GARRINGER,R.VIDAL, JRNL AUTH 2 J.R.MURRELL,M.E.ERRO,H.SEELAAR,I.FERRER,J.C.VAN SWIETEN, JRNL AUTH 3 B.GHETTI,S.H.W.SCHERES,M.GOEDERT JRNL TITL NOVEL TAU FILAMENT FOLDS IN INDIVIDUALS WITH MAPT MUTATIONS JRNL TITL 2 P301L AND P301T. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 39185206 JRNL DOI 10.1101/2024.08.15.608062 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.260 REMARK 3 NUMBER OF PARTICLES : 102697 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9GG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292140946. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : P301T TYPE I TAU PROTEIN REMARK 245 FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : P301T TAU FILAMENTS EXTRACTED REMARK 245 FROM HUMAN BRAIN. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 284 61.67 -103.66 REMARK 500 HIS A 299 60.43 62.65 REMARK 500 LYS A 343 64.95 63.03 REMARK 500 LEU B 284 61.61 -103.64 REMARK 500 HIS B 299 60.45 62.70 REMARK 500 LYS B 343 64.98 63.08 REMARK 500 LEU C 284 61.66 -103.63 REMARK 500 HIS C 299 60.43 62.65 REMARK 500 LYS C 343 65.01 63.00 REMARK 500 LEU D 284 61.68 -103.68 REMARK 500 HIS D 299 60.46 62.64 REMARK 500 LYS D 343 64.94 63.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-51320 RELATED DB: EMDB REMARK 900 P301T TYPE I TAU FILAMENTS FROM HUMAN BRAIN DBREF 9GG1 A 273 379 UNP P10636 TAU_HUMAN 215 321 DBREF 9GG1 B 273 379 UNP P10636 TAU_HUMAN 215 321 DBREF 9GG1 C 273 379 UNP P10636 TAU_HUMAN 215 321 DBREF 9GG1 D 273 379 UNP P10636 TAU_HUMAN 215 321 SEQADV 9GG1 THR A 301 UNP P10636 PRO 243 VARIANT SEQADV 9GG1 THR B 301 UNP P10636 PRO 243 VARIANT SEQADV 9GG1 THR C 301 UNP P10636 PRO 243 VARIANT SEQADV 9GG1 THR D 301 UNP P10636 PRO 243 VARIANT SEQRES 1 A 107 GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SER SEQRES 2 A 107 ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE LYS SEQRES 3 A 107 HIS VAL THR GLY GLY GLY SER VAL GLN ILE VAL TYR LYS SEQRES 4 A 107 PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SER SEQRES 5 A 107 LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN VAL SEQRES 6 A 107 GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG VAL SEQRES 7 A 107 GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS VAL SEQRES 8 A 107 PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS LEU SEQRES 9 A 107 THR PHE ARG SEQRES 1 B 107 GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SER SEQRES 2 B 107 ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE LYS SEQRES 3 B 107 HIS VAL THR GLY GLY GLY SER VAL GLN ILE VAL TYR LYS SEQRES 4 B 107 PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SER SEQRES 5 B 107 LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN VAL SEQRES 6 B 107 GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG VAL SEQRES 7 B 107 GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS VAL SEQRES 8 B 107 PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS LEU SEQRES 9 B 107 THR PHE ARG SEQRES 1 C 107 GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SER SEQRES 2 C 107 ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE LYS SEQRES 3 C 107 HIS VAL THR GLY GLY GLY SER VAL GLN ILE VAL TYR LYS SEQRES 4 C 107 PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SER SEQRES 5 C 107 LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN VAL SEQRES 6 C 107 GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG VAL SEQRES 7 C 107 GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS VAL SEQRES 8 C 107 PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS LEU SEQRES 9 C 107 THR PHE ARG SEQRES 1 D 107 GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SER SEQRES 2 D 107 ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE LYS SEQRES 3 D 107 HIS VAL THR GLY GLY GLY SER VAL GLN ILE VAL TYR LYS SEQRES 4 D 107 PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SER SEQRES 5 D 107 LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN VAL SEQRES 6 D 107 GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG VAL SEQRES 7 D 107 GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS VAL SEQRES 8 D 107 PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS LEU SEQRES 9 D 107 THR PHE ARG SHEET 1 AA1 4 LYS C 274 ASN C 279 0 SHEET 2 AA1 4 LYS A 274 ASN A 279 1 N ILE A 277 O ILE C 278 SHEET 3 AA1 4 LYS B 274 ASN B 279 1 O ILE B 277 N ILE A 278 SHEET 4 AA1 4 LYS D 274 ASN D 279 1 O ILE D 277 N ILE B 278 SHEET 1 AA2 4 LEU C 282 ASP C 283 0 SHEET 2 AA2 4 LEU A 282 ASP A 283 1 N ASP A 283 O LEU C 282 SHEET 3 AA2 4 LEU B 282 ASP B 283 1 O ASP B 283 N LEU A 282 SHEET 4 AA2 4 LEU D 282 ASP D 283 1 O ASP D 283 N LEU B 282 SHEET 1 AA3 4 ASN C 286 GLY C 302 0 SHEET 2 AA3 4 ASN A 286 GLY A 302 1 N ILE A 297 O ASN C 296 SHEET 3 AA3 4 ASN B 286 GLY B 302 1 O ILE B 297 N ASN A 296 SHEET 4 AA3 4 ASN D 286 GLY D 302 1 O ILE D 297 N ASN B 296 SHEET 1 AA4 4 SER C 305 TYR C 310 0 SHEET 2 AA4 4 SER A 305 TYR A 310 1 N VAL A 309 O TYR C 310 SHEET 3 AA4 4 SER B 305 TYR B 310 1 O VAL B 309 N TYR A 310 SHEET 4 AA4 4 SER D 305 TYR D 310 1 O VAL D 309 N TYR B 310 SHEET 1 AA5 4 VAL C 313 ASP C 314 0 SHEET 2 AA5 4 VAL A 313 ASP A 314 1 N ASP A 314 O VAL C 313 SHEET 3 AA5 4 VAL B 313 ASP B 314 1 O ASP B 314 N VAL A 313 SHEET 4 AA5 4 VAL D 313 ASP D 314 1 O ASP D 314 N VAL B 313 SHEET 1 AA6 4 LYS C 317 CYS C 322 0 SHEET 2 AA6 4 LYS A 317 CYS A 322 1 N CYS A 322 O LYS C 321 SHEET 3 AA6 4 LYS B 317 CYS B 322 1 O CYS B 322 N LYS A 321 SHEET 4 AA6 4 LYS D 317 CYS D 322 1 O CYS D 322 N LYS B 321 SHEET 1 AA7 4 ASN C 327 HIS C 330 0 SHEET 2 AA7 4 ASN A 327 HIS A 330 1 N ILE A 328 O ASN C 327 SHEET 3 AA7 4 ASN B 327 HIS B 330 1 O ILE B 328 N ASN A 327 SHEET 4 AA7 4 ASN D 327 HIS D 330 1 O ILE D 328 N ASN B 327 SHEET 1 AA8 4 VAL C 337 PHE C 346 0 SHEET 2 AA8 4 VAL A 337 PHE A 346 1 N PHE A 346 O ASP C 345 SHEET 3 AA8 4 VAL B 337 PHE B 346 1 O PHE B 346 N ASP A 345 SHEET 4 AA8 4 VAL D 337 PHE D 346 1 O PHE D 346 N ASP B 345 SHEET 1 AA9 4 VAL C 350 ILE C 354 0 SHEET 2 AA9 4 VAL A 350 ILE A 354 1 N SER A 352 O LYS C 353 SHEET 3 AA9 4 VAL B 350 ILE B 354 1 O SER B 352 N LYS A 353 SHEET 4 AA9 4 VAL D 350 ILE D 354 1 O SER D 352 N LYS B 353 SHEET 1 AB1 4 LEU C 357 HIS C 362 0 SHEET 2 AB1 4 LEU A 357 HIS A 362 1 N ASN A 359 O ASP C 358 SHEET 3 AB1 4 LEU B 357 HIS B 362 1 O ASN B 359 N ASP A 358 SHEET 4 AB1 4 LEU D 357 HIS D 362 1 O ASN D 359 N ASP B 358 SHEET 1 AB2 4 ASN C 368 PHE C 378 0 SHEET 2 AB2 4 ASN A 368 PHE A 378 1 N PHE A 378 O THR C 377 SHEET 3 AB2 4 ASN B 368 PHE B 378 1 O PHE B 378 N THR A 377 SHEET 4 AB2 4 ASN D 368 PHE D 378 1 O PHE D 378 N THR B 377 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000