HEADER TRANSFERASE 19-AUG-24 9GIA TITLE CRYSTAL STRUCTURE OF POLYPHOSPHATE KINASE 2-II (PPK2-II) FROM BACILLUS TITLE 2 CEREUS APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHOSPHATE-AMP PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-GALACTOSE-LIPID CARRIER TRANSFERASE; COMPND 5 EC: 2.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: PAP, BC_1755; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS POLYPHOSPHATE KINASE 2 (PPK2); PHOSPHOTRANSFERASE; ENZYME STRUCTURE; KEYWDS 2 KINASE; POLYPHOSPHATE., TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SALEEM-BATCHA,M.KEPPLER,M.KUGE,J.N.ANDEXER REVDAT 1 03-SEP-25 9GIA 0 JRNL AUTH R.SALEEM-BATCHA,M.KEPPLER,M.KUGE,J.N.ANDEXER JRNL TITL CRYSTAL STRUCTURE OF POLYPHOSPHATE KINASE 2-II (PPK2-II) JRNL TITL 2 FROM BACILLUS CEREUS APO-FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00800 REMARK 3 B22 (A**2) : -0.03500 REMARK 3 B33 (A**2) : 0.02700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.522 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4440 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4192 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5972 ; 1.678 ; 1.868 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9680 ; 0.587 ; 1.820 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 6.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ; 9.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;16.311 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5140 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1060 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 887 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 110 ; 0.131 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2042 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2006 ; 6.068 ; 5.910 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2006 ; 6.068 ; 5.911 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2504 ; 8.620 ;10.629 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2505 ; 8.619 ;10.632 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2434 ; 7.249 ; 6.600 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2414 ; 7.156 ; 6.567 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3468 ;10.716 ;11.803 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3438 ;10.660 ;11.733 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 19 A 269 NULL REMARK 3 1 A 19 A 269 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9GIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292140974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : TWO-STAGE FOCUSING X-RAY OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 48.604 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 OR 4000 , TRIS BUFFER PH 8.5 REMARK 280 AND LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.56700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.40750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.27000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.56700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.40750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.56700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.40750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.56700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.40750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.13400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 93.13400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 130.54000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 130.54000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.13400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 93.13400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 TYR A 270 REMARK 465 TYR A 271 REMARK 465 GLU A 272 REMARK 465 MET A 273 REMARK 465 LYS A 274 REMARK 465 GLU A 275 REMARK 465 ASP A 276 REMARK 465 ILE A 277 REMARK 465 GLU A 278 REMARK 465 VAL A 279 REMARK 465 LEU A 280 REMARK 465 GLN A 281 REMARK 465 ASP A 282 REMARK 465 VAL A 283 REMARK 465 GLY A 284 REMARK 465 VAL A 285 REMARK 465 LYS A 286 REMARK 465 GLU A 287 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 TYR B 270 REMARK 465 TYR B 271 REMARK 465 GLU B 272 REMARK 465 MET B 273 REMARK 465 LYS B 274 REMARK 465 GLU B 275 REMARK 465 ASP B 276 REMARK 465 ILE B 277 REMARK 465 GLU B 278 REMARK 465 VAL B 279 REMARK 465 LEU B 280 REMARK 465 GLN B 281 REMARK 465 ASP B 282 REMARK 465 VAL B 283 REMARK 465 GLY B 284 REMARK 465 VAL B 285 REMARK 465 LYS B 286 REMARK 465 GLU B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 151 CG - SD - CE ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 137 -93.81 -122.49 REMARK 500 ASP A 167 -126.82 -92.83 REMARK 500 LYS A 199 -19.82 108.47 REMARK 500 ALA A 230 73.87 -152.22 REMARK 500 SER A 268 68.51 -159.07 REMARK 500 LEU B 137 -95.16 -122.69 REMARK 500 ASP B 167 -126.86 -94.56 REMARK 500 ALA B 230 71.91 -157.65 REMARK 500 SER B 268 61.36 26.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 197 0.14 SIDE CHAIN REMARK 500 ARG B 50 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9GIA A 21 287 UNP Q81F46 Q81F46_BACCR 1 267 DBREF 9GIA B 21 287 UNP Q81F46 Q81F46_BACCR 1 267 SEQADV 9GIA MET A 1 UNP Q81F46 INITIATING METHIONINE SEQADV 9GIA GLY A 2 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER A 3 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER A 4 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 5 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 6 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 7 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 8 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 9 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 10 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER A 11 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER A 12 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA GLY A 13 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA LEU A 14 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA VAL A 15 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA PRO A 16 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA ARG A 17 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA GLY A 18 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER A 19 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS A 20 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA MET B 1 UNP Q81F46 INITIATING METHIONINE SEQADV 9GIA GLY B 2 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER B 3 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER B 4 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 5 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 6 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 7 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 8 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 9 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 10 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER B 11 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER B 12 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA GLY B 13 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA LEU B 14 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA VAL B 15 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA PRO B 16 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA ARG B 17 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA GLY B 18 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA SER B 19 UNP Q81F46 EXPRESSION TAG SEQADV 9GIA HIS B 20 UNP Q81F46 EXPRESSION TAG SEQRES 1 A 287 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 287 LEU VAL PRO ARG GLY SER HIS MET GLU ASN GLY HIS LEU SEQRES 3 A 287 ALA LYS VAL ASP LEU THR LYS LYS ILE GLU SER LYS SER SEQRES 4 A 287 LYS TYR ASN LYS LYS LEU GLU LYS TYR GLN ARG ARG LEU SEQRES 5 A 287 LEU ALA LEU GLN GLN ILE LEU LYS GLU GLU LYS ILE ALA SEQRES 6 A 287 VAL MET LEU VAL MET GLU GLY TRP ASP ALA ALA GLY LYS SEQRES 7 A 287 GLY GLY ALA ILE LYS ARG VAL THR GLU HIS LEU ASP PRO SEQRES 8 A 287 ARG GLY PHE GLN VAL ASP PRO ILE GLY ALA PRO ALA PRO SEQRES 9 A 287 HIS GLU LYS ARG TYR HIS TYR LEU GLN ARG PHE TRP ARG SEQRES 10 A 287 LYS ILE PRO GLN TYR GLY GLN ILE THR ILE PHE ASP ARG SEQRES 11 A 287 SER TRP TYR GLY ARG VAL LEU VAL GLU ARG VAL GLU GLY SEQRES 12 A 287 PHE ALA THR LYS GLU GLU TRP MET ARG ALA TYR ASP GLU SEQRES 13 A 287 ILE ASN ASP PHE GLU LYS LEU LEU THR ASP ASP HIS TYR SEQRES 14 A 287 ILE ILE GLY LYS PHE PHE TYR HIS ILE SER LYS GLU GLU SEQRES 15 A 287 GLN LEU LYS ARG PHE LYS ASP ARG GLU LYS ASN PRO LEU SEQRES 16 A 287 LYS ARG TRP LYS ILE THR ASP GLU ASP TRP ARG ASN ARG SEQRES 17 A 287 GLU LYS TRP ASP GLU TYR VAL GLU ALA MET GLU ASP MET SEQRES 18 A 287 PHE GLU LYS THR SER LYS PRO ASN ALA LYS TRP HIS ILE SEQRES 19 A 287 ILE GLU SER ASN ASP LYS LEU TYR ALA ARG VAL LYS THR SEQRES 20 A 287 LEU LYS ILE ILE ILE SER PHE ILE GLU ASP TYR PHE LEU SEQRES 21 A 287 GLU HIS GLY ILE GLU LEU PRO SER TYR TYR TYR GLU MET SEQRES 22 A 287 LYS GLU ASP ILE GLU VAL LEU GLN ASP VAL GLY VAL LYS SEQRES 23 A 287 GLU SEQRES 1 B 287 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 287 LEU VAL PRO ARG GLY SER HIS MET GLU ASN GLY HIS LEU SEQRES 3 B 287 ALA LYS VAL ASP LEU THR LYS LYS ILE GLU SER LYS SER SEQRES 4 B 287 LYS TYR ASN LYS LYS LEU GLU LYS TYR GLN ARG ARG LEU SEQRES 5 B 287 LEU ALA LEU GLN GLN ILE LEU LYS GLU GLU LYS ILE ALA SEQRES 6 B 287 VAL MET LEU VAL MET GLU GLY TRP ASP ALA ALA GLY LYS SEQRES 7 B 287 GLY GLY ALA ILE LYS ARG VAL THR GLU HIS LEU ASP PRO SEQRES 8 B 287 ARG GLY PHE GLN VAL ASP PRO ILE GLY ALA PRO ALA PRO SEQRES 9 B 287 HIS GLU LYS ARG TYR HIS TYR LEU GLN ARG PHE TRP ARG SEQRES 10 B 287 LYS ILE PRO GLN TYR GLY GLN ILE THR ILE PHE ASP ARG SEQRES 11 B 287 SER TRP TYR GLY ARG VAL LEU VAL GLU ARG VAL GLU GLY SEQRES 12 B 287 PHE ALA THR LYS GLU GLU TRP MET ARG ALA TYR ASP GLU SEQRES 13 B 287 ILE ASN ASP PHE GLU LYS LEU LEU THR ASP ASP HIS TYR SEQRES 14 B 287 ILE ILE GLY LYS PHE PHE TYR HIS ILE SER LYS GLU GLU SEQRES 15 B 287 GLN LEU LYS ARG PHE LYS ASP ARG GLU LYS ASN PRO LEU SEQRES 16 B 287 LYS ARG TRP LYS ILE THR ASP GLU ASP TRP ARG ASN ARG SEQRES 17 B 287 GLU LYS TRP ASP GLU TYR VAL GLU ALA MET GLU ASP MET SEQRES 18 B 287 PHE GLU LYS THR SER LYS PRO ASN ALA LYS TRP HIS ILE SEQRES 19 B 287 ILE GLU SER ASN ASP LYS LEU TYR ALA ARG VAL LYS THR SEQRES 20 B 287 LEU LYS ILE ILE ILE SER PHE ILE GLU ASP TYR PHE LEU SEQRES 21 B 287 GLU HIS GLY ILE GLU LEU PRO SER TYR TYR TYR GLU MET SEQRES 22 B 287 LYS GLU ASP ILE GLU VAL LEU GLN ASP VAL GLY VAL LYS SEQRES 23 B 287 GLU HET POP A 301 9 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 A 304 5 HET PO4 B 301 5 HET POP B 302 9 HET PO4 B 303 5 HET PO4 B 304 5 HETNAM POP PYROPHOSPHATE 2- HETNAM PO4 PHOSPHATE ION FORMUL 3 POP 2(H2 O7 P2 2-) FORMUL 4 PO4 6(O4 P 3-) FORMUL 11 HOH *58(H2 O) HELIX 1 AA1 SER A 37 LYS A 63 1 27 HELIX 2 AA2 GLY A 77 GLU A 87 1 11 HELIX 3 AA3 ASP A 90 ARG A 92 5 3 HELIX 4 AA4 LEU A 112 ARG A 117 1 6 HELIX 5 AA5 SER A 131 VAL A 136 5 6 HELIX 6 AA6 LEU A 137 GLU A 142 1 6 HELIX 7 AA7 THR A 146 ASP A 166 1 21 HELIX 8 AA8 SER A 179 ASN A 193 1 15 HELIX 9 AA9 PRO A 194 ARG A 197 5 4 HELIX 10 AB1 THR A 201 LYS A 210 1 10 HELIX 11 AB2 LYS A 210 SER A 226 1 17 HELIX 12 AB3 ASP A 239 HIS A 262 1 24 HELIX 13 AB4 GLY B 24 VAL B 29 1 6 HELIX 14 AB5 SER B 37 LYS B 63 1 27 HELIX 15 AB6 GLY B 77 GLU B 87 1 11 HELIX 16 AB7 ASP B 90 ARG B 92 5 3 HELIX 17 AB8 LEU B 112 ARG B 117 1 6 HELIX 18 AB9 SER B 131 VAL B 136 5 6 HELIX 19 AC1 LEU B 137 GLU B 142 1 6 HELIX 20 AC2 THR B 146 ASP B 166 1 21 HELIX 21 AC3 SER B 179 ASN B 193 1 15 HELIX 22 AC4 THR B 201 LYS B 210 1 10 HELIX 23 AC5 LYS B 210 THR B 225 1 16 HELIX 24 AC6 ASP B 239 HIS B 262 1 24 SHEET 1 AA1 5 PHE A 94 ASP A 97 0 SHEET 2 AA1 5 ILE A 125 PHE A 128 1 O ILE A 127 N ASP A 97 SHEET 3 AA1 5 ALA A 65 GLY A 72 1 N LEU A 68 O PHE A 128 SHEET 4 AA1 5 TYR A 169 HIS A 177 1 O ILE A 170 N ALA A 65 SHEET 5 AA1 5 TRP A 232 GLU A 236 1 O ILE A 235 N PHE A 175 SHEET 1 AA2 5 PHE B 94 ASP B 97 0 SHEET 2 AA2 5 ILE B 125 PHE B 128 1 O ILE B 127 N ASP B 97 SHEET 3 AA2 5 ALA B 65 GLY B 72 1 N LEU B 68 O PHE B 128 SHEET 4 AA2 5 TYR B 169 HIS B 177 1 O ILE B 170 N ALA B 65 SHEET 5 AA2 5 TRP B 232 GLU B 236 1 O ILE B 235 N PHE B 175 CRYST1 93.134 116.815 130.540 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007660 0.00000 CONECT 4291 4292 4293 4294 4295 CONECT 4292 4291 CONECT 4293 4291 CONECT 4294 4291 CONECT 4295 4291 4296 CONECT 4296 4295 4297 4298 4299 CONECT 4297 4296 CONECT 4298 4296 CONECT 4299 4296 CONECT 4300 4301 4302 4303 4304 CONECT 4301 4300 CONECT 4302 4300 CONECT 4303 4300 CONECT 4304 4300 CONECT 4305 4306 4307 4308 4309 CONECT 4306 4305 CONECT 4307 4305 CONECT 4308 4305 CONECT 4309 4305 CONECT 4310 4311 4312 4313 4314 CONECT 4311 4310 CONECT 4312 4310 CONECT 4313 4310 CONECT 4314 4310 CONECT 4315 4316 4317 4318 4319 CONECT 4316 4315 CONECT 4317 4315 CONECT 4318 4315 CONECT 4319 4315 CONECT 4320 4321 4322 4323 4324 CONECT 4321 4320 CONECT 4322 4320 CONECT 4323 4320 CONECT 4324 4320 4325 CONECT 4325 4324 4326 4327 4328 CONECT 4326 4325 CONECT 4327 4325 CONECT 4328 4325 CONECT 4329 4330 4331 4332 4333 CONECT 4330 4329 CONECT 4331 4329 CONECT 4332 4329 CONECT 4333 4329 CONECT 4334 4335 4336 4337 4338 CONECT 4335 4334 CONECT 4336 4334 CONECT 4337 4334 CONECT 4338 4334 MASTER 440 0 8 24 10 0 0 6 4394 2 48 46 END