HEADER HYDROLASE 26-AUG-24 9GKZ TITLE CRYSTAL STRUCTURE OF ACETYLPOLYAMINE AMIDOHYDROLASE (APAH) FROM TITLE 2 PSEUDOMONAS SP. M30-35 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLPOLYAMINE AMIDOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HIS6-TAGGED TRUNCATED (1-342) FUSION-PTOTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. M30-35; SOURCE 3 ORGANISM_TAXID: 1981174; SOURCE 4 STRAIN: M30-35; SOURCE 5 GENE: B9K09_22070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-45B(+) KEYWDS ACETYLPOLYAMINE AMIDOHYDROLASE, POLYAMINE DEACETYLASE, DEACETYLASE, KEYWDS 2 DEACYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.G.GRAF,S.SCHULZE,G.J.PALM,M.LAMMERS REVDAT 2 13-NOV-24 9GKZ 1 JRNL REVDAT 1 06-NOV-24 9GKZ 0 JRNL AUTH L.G.GRAF,C.MORENO-YRUELA,C.QIN,S.SCHULZE,G.J.PALM, JRNL AUTH 2 O.SCHMOKER,N.WANG,D.M.HOCKING,L.JEBELI,B.GIRBARDT,L.BERNDT, JRNL AUTH 3 B.DORRE,D.M.WEIS,M.JANETZKY,D.ALBRECHT,D.ZUHLKE,S.SIEVERS, JRNL AUTH 4 R.A.STRUGNELL,C.A.OLSEN,K.HOFMANN,M.LAMMERS JRNL TITL DISTRIBUTION AND DIVERSITY OF CLASSICAL DEACYLASES IN JRNL TITL 2 BACTERIA. JRNL REF NAT COMMUN V. 15 9496 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39489725 JRNL DOI 10.1038/S41467-024-53903-0 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2163 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2973 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.370 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292141043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979510 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 (BUILT REMARK 200 20220220) REMARK 200 DATA SCALING SOFTWARE : XDS JAN 10, 2022 (BUILT REMARK 200 20220220) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.716 REMARK 200 RESOLUTION RANGE LOW (A) : 73.671 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.23700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 1.02400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V3.60.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.5 20% (W/V) REMARK 280 PEG3000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 73.67100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.42900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.67100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.42900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 551 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 LEU A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 CYS A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 ILE A 19 REMARK 465 ASP A 20 REMARK 465 GLY A 21 REMARK 465 LYS A 22 REMARK 465 LEU A 23 REMARK 465 MET A 24 REMARK 465 PRO A 25 REMARK 465 CYS A 26 REMARK 465 PHE A 27 REMARK 465 GLU A 28 REMARK 465 MET A 29 REMARK 465 PRO A 30 REMARK 465 MET B -10 REMARK 465 ALA B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 VAL B -2 REMARK 465 ASP B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 LEU B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 CYS B 16 REMARK 465 GLU B 17 REMARK 465 LEU B 18 REMARK 465 ILE B 19 REMARK 465 ASP B 20 REMARK 465 GLY B 21 REMARK 465 LYS B 22 REMARK 465 LEU B 23 REMARK 465 MET B 24 REMARK 465 PRO B 25 REMARK 465 CYS B 26 REMARK 465 PHE B 27 REMARK 465 GLU B 28 REMARK 465 MET B 29 REMARK 465 PRO B 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A -2 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 -156.85 -94.35 REMARK 500 THR A 96 -3.21 80.87 REMARK 500 ALA A 118 72.98 -113.33 REMARK 500 THR A 121 -165.15 -126.74 REMARK 500 ASP A 163 40.23 -144.37 REMARK 500 PHE A 227 -40.44 71.41 REMARK 500 TYR A 247 77.71 -118.49 REMARK 500 GLU A 320 -121.89 -114.03 REMARK 500 ALA A 324 55.12 -67.81 REMARK 500 SER B 6 -106.68 -94.03 REMARK 500 ASP B 82 61.98 35.06 REMARK 500 ALA B 94 -156.95 -88.93 REMARK 500 THR B 96 -3.94 80.41 REMARK 500 THR B 121 -165.54 -129.91 REMARK 500 PRO B 156 -176.23 -68.16 REMARK 500 ASP B 163 41.40 -145.22 REMARK 500 ASP B 195 151.09 -47.05 REMARK 500 PHE B 227 -43.04 74.79 REMARK 500 ALA B 254 -168.95 -120.65 REMARK 500 GLU B 320 -122.22 -125.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 156 O REMARK 620 2 LEU A 171 O 79.4 REMARK 620 3 HOH A 521 O 111.4 68.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 O REMARK 620 2 ASP A 193 OD1 67.4 REMARK 620 3 ASP A 195 O 101.4 100.2 REMARK 620 4 HIS A 197 O 157.7 90.4 79.8 REMARK 620 5 SER A 216 OG 86.8 102.1 157.7 100.4 REMARK 620 6 ILE A 217 O 81.1 139.7 61.0 117.6 100.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 195 OD1 REMARK 620 2 HIS A 197 ND1 107.3 REMARK 620 3 ASP A 284 OD2 100.3 87.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 206 O REMARK 620 2 ARG A 209 O 82.6 REMARK 620 3 VAL A 212 O 121.4 89.0 REMARK 620 4 PHE A 243 O 150.5 114.3 84.4 REMARK 620 5 HOH A 519 O 83.3 86.7 154.2 74.3 REMARK 620 6 HOH A 526 O 71.3 148.5 119.4 83.9 73.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 O REMARK 620 2 ASP B 193 OD1 72.4 REMARK 620 3 ASP B 195 O 100.2 103.1 REMARK 620 4 HIS B 197 O 159.6 87.2 83.7 REMARK 620 5 SER B 216 OG 81.1 98.2 158.0 102.9 REMARK 620 6 ILE B 217 O 80.9 147.2 62.9 118.1 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 OD2 REMARK 620 2 THR B 202 OG1 121.8 REMARK 620 3 SER B 280 OG 100.6 122.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 195 OD2 REMARK 620 2 HIS B 197 ND1 104.2 REMARK 620 3 ASP B 284 OD2 104.9 87.0 REMARK 620 4 ACT B 401 O 89.1 101.7 161.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 206 O REMARK 620 2 ARG B 209 O 81.3 REMARK 620 3 VAL B 212 O 109.7 86.8 REMARK 620 4 PHE B 243 O 161.4 110.2 86.1 REMARK 620 5 HOH B 509 O 65.2 142.2 119.8 98.8 REMARK 620 6 HOH B 529 O 88.9 85.6 158.6 77.9 77.2 REMARK 620 N 1 2 3 4 5 DBREF1 9GKZ A 1 342 UNP A0A1Y0KY79_9PSED DBREF2 9GKZ A A0A1Y0KY79 1 342 DBREF1 9GKZ B 1 342 UNP A0A1Y0KY79_9PSED DBREF2 9GKZ B A0A1Y0KY79 1 342 SEQADV 9GKZ MET A -10 UNP A0A1Y0KY7 INITIATING METHIONINE SEQADV 9GKZ ALA A -9 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS A -8 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS A -7 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS A -6 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS A -5 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS A -4 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS A -3 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ VAL A -2 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ GLY A -1 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ THR A 0 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ MET B -10 UNP A0A1Y0KY7 INITIATING METHIONINE SEQADV 9GKZ ALA B -9 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS B -8 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS B -7 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS B -6 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS B -5 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS B -4 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ HIS B -3 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ VAL B -2 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ GLY B -1 UNP A0A1Y0KY7 EXPRESSION TAG SEQADV 9GKZ THR B 0 UNP A0A1Y0KY7 EXPRESSION TAG SEQRES 1 A 353 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR MET LEU SEQRES 2 A 353 THR ILE TYR SER ASP ASP HIS HIS LEU HIS HIS GLY SER SEQRES 3 A 353 CYS GLU LEU ILE ASP GLY LYS LEU MET PRO CYS PHE GLU SEQRES 4 A 353 MET PRO LYS ARG ALA ASP HIS ILE LEU GLN ARG VAL LYS SEQRES 5 A 353 ASP ARG ASN ILE GLY GLU ILE ARG GLU PRO GLN ASP PHE SEQRES 6 A 353 GLY ARG ASP PRO ILE GLN ARG ILE HIS THR ALA GLU TYR SEQRES 7 A 353 LEU ASN PHE PHE GLU GLY ALA TRP ALA ARG TRP GLN GLU SEQRES 8 A 353 GLN ASP GLY THR GLY ASP LEU LEU PRO TYR THR TRP PRO SEQRES 9 A 353 ALA ARG THR LEU SER GLN ARG LEU PRO THR SER LEU HIS SEQRES 10 A 353 GLY GLN LEU GLY TYR TYR SER PHE ASP ALA GLY ALA PRO SEQRES 11 A 353 ILE THR ALA GLY THR TRP GLN ALA ALA TYR SER ALA ALA SEQRES 12 A 353 GLN VAL ALA LEU THR ALA GLN HIS GLU ILE THR ASN GLY SEQRES 13 A 353 ALA HIS SER ALA PHE ALA LEU CYS ARG PRO PRO GLY HIS SEQRES 14 A 353 HIS ALA ALA SER ASP VAL MET GLY GLY TYR CYS TYR LEU SEQRES 15 A 353 ASN ASN ALA ALA ILE ALA ALA GLN ALA PHE ILE ASP GLN SEQRES 16 A 353 GLY HIS LYS ARG VAL ALA ILE LEU ASP VAL ASP TYR HIS SEQRES 17 A 353 HIS GLY ASN GLY THR GLN SER ILE PHE TYR SER ARG SER SEQRES 18 A 353 ASP VAL LEU PHE THR SER ILE HIS GLY ASP PRO LYS PHE SEQRES 19 A 353 GLU PHE PRO PHE PHE LEU GLY HIS ALA ASP GLU HIS GLY SEQRES 20 A 353 GLU GLY THR GLY GLU GLY PHE ASN ILE ASN TYR PRO LEU SEQRES 21 A 353 PRO ALA GLY SER ALA TRP ASP SER TRP GLY ALA ALA LEU SEQRES 22 A 353 ASP ASP ALA CYS LYS ARG ILE ASN ALA PHE ASP ALA GLU SEQRES 23 A 353 VAL VAL ILE VAL SER LEU GLY VAL ASP THR TYR LYS GLU SEQRES 24 A 353 ASP PRO ILE SER GLN PHE LYS LEU ASP SER PRO ASP TYR SEQRES 25 A 353 LEU SER MET GLY GLU ARG ILE ALA ALA MET GLY LEU PRO SEQRES 26 A 353 THR LEU PHE VAL MET GLU GLY GLY TYR ALA VAL GLU ALA SEQRES 27 A 353 ILE GLY VAL ASN ALA VAL ASN VAL LEU GLU GLY PHE GLU SEQRES 28 A 353 ASN VAL SEQRES 1 B 353 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR MET LEU SEQRES 2 B 353 THR ILE TYR SER ASP ASP HIS HIS LEU HIS HIS GLY SER SEQRES 3 B 353 CYS GLU LEU ILE ASP GLY LYS LEU MET PRO CYS PHE GLU SEQRES 4 B 353 MET PRO LYS ARG ALA ASP HIS ILE LEU GLN ARG VAL LYS SEQRES 5 B 353 ASP ARG ASN ILE GLY GLU ILE ARG GLU PRO GLN ASP PHE SEQRES 6 B 353 GLY ARG ASP PRO ILE GLN ARG ILE HIS THR ALA GLU TYR SEQRES 7 B 353 LEU ASN PHE PHE GLU GLY ALA TRP ALA ARG TRP GLN GLU SEQRES 8 B 353 GLN ASP GLY THR GLY ASP LEU LEU PRO TYR THR TRP PRO SEQRES 9 B 353 ALA ARG THR LEU SER GLN ARG LEU PRO THR SER LEU HIS SEQRES 10 B 353 GLY GLN LEU GLY TYR TYR SER PHE ASP ALA GLY ALA PRO SEQRES 11 B 353 ILE THR ALA GLY THR TRP GLN ALA ALA TYR SER ALA ALA SEQRES 12 B 353 GLN VAL ALA LEU THR ALA GLN HIS GLU ILE THR ASN GLY SEQRES 13 B 353 ALA HIS SER ALA PHE ALA LEU CYS ARG PRO PRO GLY HIS SEQRES 14 B 353 HIS ALA ALA SER ASP VAL MET GLY GLY TYR CYS TYR LEU SEQRES 15 B 353 ASN ASN ALA ALA ILE ALA ALA GLN ALA PHE ILE ASP GLN SEQRES 16 B 353 GLY HIS LYS ARG VAL ALA ILE LEU ASP VAL ASP TYR HIS SEQRES 17 B 353 HIS GLY ASN GLY THR GLN SER ILE PHE TYR SER ARG SER SEQRES 18 B 353 ASP VAL LEU PHE THR SER ILE HIS GLY ASP PRO LYS PHE SEQRES 19 B 353 GLU PHE PRO PHE PHE LEU GLY HIS ALA ASP GLU HIS GLY SEQRES 20 B 353 GLU GLY THR GLY GLU GLY PHE ASN ILE ASN TYR PRO LEU SEQRES 21 B 353 PRO ALA GLY SER ALA TRP ASP SER TRP GLY ALA ALA LEU SEQRES 22 B 353 ASP ASP ALA CYS LYS ARG ILE ASN ALA PHE ASP ALA GLU SEQRES 23 B 353 VAL VAL ILE VAL SER LEU GLY VAL ASP THR TYR LYS GLU SEQRES 24 B 353 ASP PRO ILE SER GLN PHE LYS LEU ASP SER PRO ASP TYR SEQRES 25 B 353 LEU SER MET GLY GLU ARG ILE ALA ALA MET GLY LEU PRO SEQRES 26 B 353 THR LEU PHE VAL MET GLU GLY GLY TYR ALA VAL GLU ALA SEQRES 27 B 353 ILE GLY VAL ASN ALA VAL ASN VAL LEU GLU GLY PHE GLU SEQRES 28 B 353 ASN VAL HET PGE A 401 10 HET K A 402 1 HET K A 403 1 HET K A 404 1 HET ZN A 405 1 HET CL A 406 1 HET ACT B 401 4 HET PEG B 402 7 HET K B 403 1 HET K B 404 1 HET K B 405 1 HET ZN B 406 1 HETNAM PGE TRIETHYLENE GLYCOL HETNAM K POTASSIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PGE C6 H14 O4 FORMUL 4 K 6(K 1+) FORMUL 7 ZN 2(ZN 2+) FORMUL 8 CL CL 1- FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 PEG C4 H10 O3 FORMUL 15 HOH *129(H2 O) HELIX 1 AA1 ARG A 32 ARG A 43 1 12 HELIX 2 AA2 ARG A 56 ARG A 61 1 6 HELIX 3 AA3 THR A 64 GLU A 80 1 17 HELIX 4 AA4 SER A 104 TYR A 112 1 9 HELIX 5 AA5 GLY A 123 ASN A 144 1 22 HELIX 6 AA6 ASN A 172 GLN A 184 1 13 HELIX 7 AA7 GLY A 199 TYR A 207 1 9 HELIX 8 AA8 GLU A 237 GLU A 241 5 5 HELIX 9 AA9 ALA A 254 PHE A 272 1 19 HELIX 10 AB1 ASP A 297 ALA A 310 1 14 HELIX 11 AB2 ALA A 327 VAL A 342 1 16 HELIX 12 AB3 ARG B 32 ARG B 43 1 12 HELIX 13 AB4 GLY B 55 ARG B 61 1 7 HELIX 14 AB5 THR B 64 GLN B 81 1 18 HELIX 15 AB6 SER B 104 TYR B 112 1 9 HELIX 16 AB7 GLY B 123 ASN B 144 1 22 HELIX 17 AB8 ASN B 172 GLN B 184 1 13 HELIX 18 AB9 GLY B 199 PHE B 206 1 8 HELIX 19 AC1 GLU B 237 GLU B 241 5 5 HELIX 20 AC2 ALA B 254 PHE B 272 1 19 HELIX 21 AC3 ASP B 297 MET B 311 1 15 HELIX 22 AC4 ALA B 327 ASN B 341 1 15 SHEET 1 AA1 8 ILE A 48 ARG A 49 0 SHEET 2 AA1 8 LEU A 2 ILE A 4 1 N THR A 3 O ARG A 49 SHEET 3 AA1 8 SER A 148 ALA A 151 1 O PHE A 150 N ILE A 4 SHEET 4 AA1 8 THR A 315 MET A 319 1 O PHE A 317 N ALA A 151 SHEET 5 AA1 8 VAL A 277 LEU A 281 1 N VAL A 279 O LEU A 316 SHEET 6 AA1 8 VAL A 189 ASP A 193 1 N ALA A 190 O ILE A 278 SHEET 7 AA1 8 VAL A 212 GLY A 219 1 O LEU A 213 N ILE A 191 SHEET 8 AA1 8 ASN A 244 LEU A 249 1 O ILE A 245 N PHE A 214 SHEET 1 AA2 8 ILE B 48 ARG B 49 0 SHEET 2 AA2 8 LEU B 2 TYR B 5 1 N THR B 3 O ARG B 49 SHEET 3 AA2 8 SER B 148 LEU B 152 1 O PHE B 150 N ILE B 4 SHEET 4 AA2 8 THR B 315 MET B 319 1 O PHE B 317 N ALA B 151 SHEET 5 AA2 8 VAL B 276 LEU B 281 1 N VAL B 279 O LEU B 316 SHEET 6 AA2 8 VAL B 189 ASP B 193 1 N ALA B 190 O ILE B 278 SHEET 7 AA2 8 VAL B 212 GLY B 219 1 O LEU B 213 N ILE B 191 SHEET 8 AA2 8 ASN B 244 LEU B 249 1 O TYR B 247 N SER B 216 LINK O PRO A 156 K K A 403 1555 1555 2.97 LINK O LEU A 171 K K A 403 1555 1555 3.43 LINK O ASP A 193 K K A 402 1555 1555 2.78 LINK OD1 ASP A 193 K K A 402 1555 1555 2.70 LINK O ASP A 195 K K A 402 1555 1555 2.63 LINK OD1 ASP A 195 ZN ZN A 405 1555 1555 2.00 LINK O HIS A 197 K K A 402 1555 1555 2.77 LINK ND1 HIS A 197 ZN ZN A 405 1555 1555 2.28 LINK O PHE A 206 K K A 404 1555 1555 2.55 LINK O ARG A 209 K K A 404 1555 1555 2.84 LINK O VAL A 212 K K A 404 1555 1555 2.69 LINK OG SER A 216 K K A 402 1555 1555 2.85 LINK O ILE A 217 K K A 402 1555 1555 2.75 LINK O PHE A 243 K K A 404 1555 1555 3.08 LINK OD2 ASP A 284 ZN ZN A 405 1555 1555 2.13 LINK K K A 403 O HOH A 521 1555 1555 3.08 LINK K K A 404 O HOH A 519 1555 1555 2.79 LINK K K A 404 O HOH A 526 1555 1555 3.35 LINK O ASP B 193 K K B 403 1555 1555 2.69 LINK OD1 ASP B 193 K K B 403 1555 1555 2.58 LINK OD2 ASP B 193 K K B 405 1555 1555 2.71 LINK O ASP B 195 K K B 403 1555 1555 2.67 LINK OD2 ASP B 195 ZN ZN B 406 1555 1555 1.94 LINK O HIS B 197 K K B 403 1555 1555 2.74 LINK ND1 HIS B 197 ZN ZN B 406 1555 1555 2.27 LINK OG1 THR B 202 K K B 405 1555 1555 3.02 LINK O PHE B 206 K K B 404 1555 1555 2.55 LINK O ARG B 209 K K B 404 1555 1555 2.76 LINK O VAL B 212 K K B 404 1555 1555 2.79 LINK OG SER B 216 K K B 403 1555 1555 2.74 LINK O ILE B 217 K K B 403 1555 1555 2.82 LINK O PHE B 243 K K B 404 1555 1555 3.15 LINK OG SER B 280 K K B 405 1555 1555 3.02 LINK OD2 ASP B 284 ZN ZN B 406 1555 1555 2.00 LINK O ACT B 401 ZN ZN B 406 1555 1555 2.20 LINK K K B 404 O HOH B 509 1555 1555 3.20 LINK K K B 404 O HOH B 529 1555 1555 2.59 CISPEP 1 ARG A 154 PRO A 155 0 0.18 CISPEP 2 PHE A 225 PRO A 226 0 5.88 CISPEP 3 ARG B 154 PRO B 155 0 -4.60 CISPEP 4 PHE B 225 PRO B 226 0 15.65 CRYST1 147.342 48.858 82.249 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012158 0.00000