HEADER HYDROLASE 27-AUG-24 9GLB TITLE CRYSTAL STRUCTURE OF DEACETYLASE (HDAH) FROM KLEBSIELLA PNEUMONIAE TITLE 2 SUBSP. OZAENAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEACETYLASE; COMPND 3 CHAIN: C; COMPND 4 EC: 3.5.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: HIS6-TAGGED FUSION PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. OZAENAE; SOURCE 3 ORGANISM_TAXID: 574; SOURCE 4 STRAIN: NCTC10313; SOURCE 5 GENE: HDAH, NCTC10313_02007, NCTC5050_05964; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-45B(+) KEYWDS DEACETYLASE, DEACYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.QIN,L.G.GRAF,S.SCHULZE,G.J.PALM,M.LAMMERS REVDAT 1 06-NOV-24 9GLB 0 JRNL AUTH L.G.GRAF,C.MORENO-YRUELA,C.QIN,S.SCHULZE,G.J.PALM, JRNL AUTH 2 O.SCHMOEKER,N.WANG,D.HOCKING,L.JEBELI,B.GIRBARDT,L.BERNDT, JRNL AUTH 3 D.M.WEIS,M.JANETZKY,D.ZUEHLKE,S.SIEVERS,R.A.STRUGNELL, JRNL AUTH 4 C.A.OLSEN,K.HOFMANN,M.LAMMERS JRNL TITL DISTRIBUTION AND DIVERSITY OF CLASSICAL DEACYLASES IN JRNL TITL 2 BACTERIA JRNL REF NATURE COMMUNICATIONS 2024 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.0100 - 4.6600 0.99 2753 156 0.1299 0.1580 REMARK 3 2 4.6600 - 3.7000 1.00 2694 153 0.1208 0.1449 REMARK 3 3 3.7000 - 3.2400 1.00 2676 152 0.1428 0.1784 REMARK 3 4 3.2400 - 2.9400 1.00 2672 126 0.1668 0.2027 REMARK 3 5 2.9400 - 2.7300 1.00 2675 137 0.1740 0.1966 REMARK 3 6 2.7300 - 2.5700 1.00 2665 140 0.1716 0.2143 REMARK 3 7 2.5700 - 2.4400 1.00 2655 143 0.1835 0.2159 REMARK 3 8 2.4400 - 2.3400 1.00 2640 146 0.1864 0.2467 REMARK 3 9 2.3400 - 2.2500 1.00 2679 125 0.2045 0.2101 REMARK 3 10 2.2500 - 2.1700 1.00 2632 144 0.2235 0.2707 REMARK 3 11 2.1700 - 2.1000 1.00 2646 165 0.2537 0.2683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2892 REMARK 3 ANGLE : 0.832 3919 REMARK 3 CHIRALITY : 0.047 417 REMARK 3 PLANARITY : 0.008 527 REMARK 3 DIHEDRAL : 6.267 402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -19.7684 8.6190 57.9131 REMARK 3 T TENSOR REMARK 3 T11: 0.3671 T22: 0.4145 REMARK 3 T33: 0.4299 T12: 0.0462 REMARK 3 T13: -0.1031 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.9328 L22: 1.1853 REMARK 3 L33: 1.1582 L12: 0.2420 REMARK 3 L13: -0.2090 L23: 0.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.1815 S13: 0.1175 REMARK 3 S21: -0.2174 S22: -0.0583 S23: 0.2790 REMARK 3 S31: -0.1372 S32: -0.2452 S33: 0.1114 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292141047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 BUILT=20180808 REMARK 200 DATA SCALING SOFTWARE : XDS JAN 26, 2018 BUILT=20180808 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.50 REMARK 200 R MERGE FOR SHELL (I) : 2.75500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 8000, 10% (V/V) GLYCEROL REMARK 280 AND 0.5M KCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 73.58150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.58150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 73.58150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.58150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 73.58150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 73.58150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 73.58150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.58150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 73.58150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 73.58150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 73.58150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 73.58150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 73.58150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 73.58150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 73.58150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 73.58150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 73.58150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 73.58150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 73.58150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 73.58150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 73.58150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 73.58150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 73.58150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 73.58150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 73.58150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 73.58150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 147.16300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 147.16300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 814 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 839 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -10 REMARK 465 ALA C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 VAL C -2 REMARK 465 GLY C -1 REMARK 465 THR C 0 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 772 O HOH C 782 1.96 REMARK 500 OE2 GLU C 291 O HOH C 601 2.06 REMARK 500 NE2 GLN C 359 O HOH C 602 2.11 REMARK 500 NE ARG C 3 O HOH C 603 2.15 REMARK 500 NZ LYS C 4 O HOH C 604 2.17 REMARK 500 O HOH C 629 O HOH C 787 2.17 REMARK 500 O HOH C 612 O HOH C 629 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 628 O HOH C 747 4556 1.87 REMARK 500 OE1 GLU C 315 O HOH C 747 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 23 -104.77 57.71 REMARK 500 HIS C 39 134.88 -22.86 REMARK 500 GLU C 41 46.95 -85.03 REMARK 500 SER C 66 -156.63 -102.33 REMARK 500 LEU C 98 69.55 -113.14 REMARK 500 PHE C 153 -0.36 75.59 REMARK 500 ALA C 214 -65.40 -104.24 REMARK 500 GLU C 258 68.94 61.69 REMARK 500 CYS C 301 51.45 -146.15 REMARK 500 GLU C 310 -103.34 -120.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 839 DISTANCE = 7.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 179 O REMARK 620 2 ASP C 179 OD1 68.8 REMARK 620 3 ASP C 181 O 97.4 87.7 REMARK 620 4 HIS C 183 O 165.7 96.9 80.0 REMARK 620 5 SER C 202 OG 92.5 115.2 157.1 95.1 REMARK 620 6 LEU C 203 O 75.1 135.6 71.9 116.7 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 181 OD1 REMARK 620 2 ASP C 181 OD2 54.0 REMARK 620 3 HIS C 183 ND1 105.5 158.5 REMARK 620 4 ASP C 269 OD2 113.5 88.0 96.4 REMARK 620 5 ACT C 502 O 89.9 86.6 100.8 146.0 REMARK 620 6 ACT C 502 OXT 140.7 94.6 106.7 84.6 62.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 504 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 192 O REMARK 620 2 ARG C 195 O 74.8 REMARK 620 3 VAL C 198 O 120.5 79.9 REMARK 620 4 TYR C 227 O 158.6 114.6 80.7 REMARK 620 5 HOH C 653 O 83.2 88.9 149.1 78.0 REMARK 620 6 HOH C 709 O 66.2 140.7 124.2 100.7 81.9 REMARK 620 N 1 2 3 4 5 DBREF1 9GLB C 1 371 UNP A0A377Z5F6_KLEPO DBREF2 9GLB C A0A377Z5F6 1 371 SEQADV 9GLB MET C -10 UNP A0A377Z5F INITIATING METHIONINE SEQADV 9GLB ALA C -9 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB HIS C -8 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB HIS C -7 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB HIS C -6 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB HIS C -5 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB HIS C -4 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB HIS C -3 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB VAL C -2 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB GLY C -1 UNP A0A377Z5F EXPRESSION TAG SEQADV 9GLB THR C 0 UNP A0A377Z5F EXPRESSION TAG SEQRES 1 C 382 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR MET LYS SEQRES 2 C 382 ARG LYS THR GLY PHE PHE PHE ASP GLU ARG CYS PHE TRP SEQRES 3 C 382 HIS SER THR GLY LEU HIS ALA VAL THR LEU PRO VAL GLY SEQRES 4 C 382 GLY TRP VAL GLN PRO PRO ALA GLY GLY GLY HIS ALA GLU SEQRES 5 C 382 SER PRO GLU THR LYS ARG ARG MET LYS ASN LEU MET ASP SEQRES 6 C 382 VAL SER GLY LEU THR PRO GLN LEU ALA LEU ARG SER ALA SEQRES 7 C 382 ALA PRO ALA SER LEU GLU ASP LEU ARG ARG ILE HIS PRO SEQRES 8 C 382 ASP SER TYR LEU GLU ARG PHE LYS ALA ILE SER ASP ASN SEQRES 9 C 382 GLY GLY GLY MET LEU GLY LYS GLU ALA PRO LEU GLY PRO SEQRES 10 C 382 GLY SER TYR GLU ILE ALA CYS LEU SER ALA GLY LEU ALA SEQRES 11 C 382 CYS ALA ALA VAL GLU ALA VAL LEU LYS GLY GLU LEU ASP SEQRES 12 C 382 ASN ALA TYR SER LEU SER ARG PRO PRO GLY HIS HIS CYS SEQRES 13 C 382 LEU PRO ASP GLN SER MET GLY PHE CYS PHE LEU ALA ASN SEQRES 14 C 382 ILE PRO ILE ALA VAL GLU ARG ALA LYS ALA GLN LEU GLY SEQRES 15 C 382 LEU GLY LYS VAL ALA ILE ILE ASP TRP ASP VAL HIS HIS SEQRES 16 C 382 GLY ASN GLY THR GLN HIS ILE TYR LEU GLN ARG ASP ASP SEQRES 17 C 382 VAL LEU THR ILE SER LEU HIS GLN ASP GLY CYS PHE PRO SEQRES 18 C 382 PRO GLY TYR ALA GLY GLU ASP ASP ARG GLY VAL GLY ALA SEQRES 19 C 382 GLY GLU GLY TYR ASN ILE ASN ILE PRO LEU LEU ALA GLY SEQRES 20 C 382 ALA GLY ASP ASP SER TRP ARG TYR ALA LEU GLU THR ILE SEQRES 21 C 382 VAL ILE PRO ALA LEU ALA ARG PHE GLU PRO GLU LEU ILE SEQRES 22 C 382 ILE ILE ALA CYS GLY TYR ASP ALA ASN ALA MET ASP PRO SEQRES 23 C 382 LEU ALA ARG MET GLN LEU HIS SER ASP SER PHE ARG ALA SEQRES 24 C 382 MET THR GLU GLN VAL GLN GLN ALA ALA ASP ARG LEU CYS SEQRES 25 C 382 GLY GLY LYS LEU VAL MET VAL HIS GLU GLY GLY TYR ALA SEQRES 26 C 382 GLU SER TYR VAL PRO PHE CYS GLY LEU ALA VAL MET GLU SEQRES 27 C 382 ALA LEU SER GLY ILE ARG THR GLU VAL GLN ASP PRO LEU SEQRES 28 C 382 LEU GLU PHE ILE GLN GLN GLN GLN PRO ARG ALA THR PHE SEQRES 29 C 382 ALA GLN PHE GLN ARG GLN ALA ILE ASP ARG LEU ALA GLN SEQRES 30 C 382 GLN PHE GLY LEU GLN HET GOL C 501 14 HET ACT C 502 7 HET K C 503 1 HET K C 504 1 HET K C 505 1 HET ZN C 506 1 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM K POTASSIUM ION HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 K 3(K 1+) FORMUL 7 ZN ZN 2+ FORMUL 8 HOH *239(H2 O) HELIX 1 AA1 ASP C 10 HIS C 16 5 7 HELIX 2 AA2 PRO C 43 SER C 56 1 14 HELIX 3 AA3 LEU C 58 LEU C 62 5 5 HELIX 4 AA4 SER C 71 ARG C 77 1 7 HELIX 5 AA5 PRO C 80 ASN C 93 1 14 HELIX 6 AA6 GLY C 107 LYS C 128 1 22 HELIX 7 AA7 ALA C 157 LEU C 170 1 14 HELIX 8 AA8 GLY C 185 TYR C 192 1 8 HELIX 9 AA9 VAL C 221 GLU C 225 5 5 HELIX 10 AB1 GLY C 238 ILE C 249 1 12 HELIX 11 AB2 ILE C 249 GLU C 258 1 10 HELIX 12 AB3 HIS C 282 CYS C 301 1 20 HELIX 13 AB4 TYR C 317 GLY C 331 1 15 HELIX 14 AB5 LEU C 340 GLN C 348 1 9 HELIX 15 AB6 ARG C 350 PHE C 368 1 19 SHEET 1 AA1 8 ALA C 63 ARG C 65 0 SHEET 2 AA1 8 THR C 5 PHE C 8 1 N PHE C 7 O ALA C 63 SHEET 3 AA1 8 ASN C 133 SER C 136 1 O TYR C 135 N PHE C 8 SHEET 4 AA1 8 LEU C 305 HIS C 309 1 O HIS C 309 N SER C 136 SHEET 5 AA1 8 LEU C 261 CYS C 266 1 N ILE C 264 O VAL C 308 SHEET 6 AA1 8 VAL C 175 ASP C 179 1 N ILE C 178 O ALA C 265 SHEET 7 AA1 8 VAL C 198 GLN C 205 1 O LEU C 199 N ILE C 177 SHEET 8 AA1 8 ASN C 228 LEU C 233 1 O ILE C 231 N SER C 202 SHEET 1 AA2 2 HIS C 21 ALA C 22 0 SHEET 2 AA2 2 LEU C 25 PRO C 26 -1 O LEU C 25 N ALA C 22 SHEET 1 AA3 2 GLY C 96 MET C 97 0 SHEET 2 AA3 2 PRO C 103 LEU C 104 -1 O LEU C 104 N GLY C 96 LINK O ASP C 179 K K C 503 1555 1555 2.88 LINK OD1 ASP C 179 K K C 503 1555 1555 2.71 LINK O ASP C 181 K K C 503 1555 1555 2.51 LINK OD1 ASP C 181 ZN ZN C 506 1555 1555 1.98 LINK OD2 ASP C 181 ZN ZN C 506 1555 1555 2.68 LINK O HIS C 183 K K C 503 1555 1555 2.66 LINK ND1 HIS C 183 ZN ZN C 506 1555 1555 2.22 LINK O TYR C 192 K K C 504 1555 1555 2.68 LINK O ARG C 195 K K C 504 1555 1555 2.90 LINK O VAL C 198 K K C 504 1555 1555 2.73 LINK OG SER C 202 K K C 503 1555 1555 2.86 LINK O LEU C 203 K K C 503 1555 1555 2.60 LINK O TYR C 227 K K C 504 1555 1555 3.00 LINK OD2 ASP C 269 ZN ZN C 506 1555 1555 1.98 LINK O ACT C 502 ZN ZN C 506 1555 1555 1.96 LINK OXT ACT C 502 ZN ZN C 506 1555 1555 2.22 LINK K K C 504 O HOH C 653 1555 1555 2.72 LINK K K C 504 O HOH C 709 1555 1555 2.89 LINK K K C 505 O HOH C 705 1555 1555 2.52 CISPEP 1 ARG C 139 PRO C 140 0 4.94 CISPEP 2 PHE C 209 PRO C 210 0 -5.58 CRYST1 147.163 147.163 147.163 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006795 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006795 0.00000