data_9GML # _entry.id 9GML # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9GML pdb_00009gml 10.2210/pdb9gml/pdb WWPDB D_1292141315 ? ? EMDB EMD-51450 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-07-23 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9GML _pdbx_database_status.recvd_initial_deposition_date 2024-08-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of Sporosarcina pasteurii urease' _pdbx_database_related.db_id EMD-51450 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email stefano.ciurli@unibo.it _pdbx_contact_author.name_first Stefano _pdbx_contact_author.name_last Ciurli _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9557-926X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mazzei, L.' 1 0000-0003-1335-9365 'Tria, G.' 2 0000-0003-4736-471X 'Ciurli, S.' 3 0000-0001-9557-926X 'Cianci, M.' 4 0000-0001-5607-6061 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_id_ASTM IJBMDR _citation.journal_id_CSD 0708 _citation.journal_id_ISSN 0141-8130 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 283 _citation.language ? _citation.page_first 137904 _citation.page_last 137904 _citation.title 'Exploring the conformational space of the mobile flap in Sporosarcina pasteurii urease by cryo-electron microscopy.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2024.137904 _citation.pdbx_database_id_PubMed 39571870 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mazzei, L.' 1 ? primary 'Tria, G.' 2 ? primary 'Ciurli, S.' 3 ? primary 'Cianci, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Urease subunit gamma' 11134.895 1 3.5.1.5 ? ? ? 2 polymer nat 'Urease subunit beta' 13975.539 1 3.5.1.5 ? ? ? 3 polymer nat 'Urease subunit alpha' 61575.648 1 3.5.1.5 ? ? ? 4 non-polymer syn 'NICKEL (II) ION' 58.693 2 ? ? ? ? 5 non-polymer syn 'HYDROXIDE ION' 17.007 1 ? ? ? ? 6 water nat water 18.015 2 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Urea amidohydrolase subunit gamma' 2 'Urea amidohydrolase subunit beta' 3 'Urea amidohydrolase subunit alpha' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(CXM)HLNPAEKEKLQIFLASELALKRKARGLKLNYPEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDVMEGVPEM IDDIQAEATFPDGTKLVTVHNPIS ; ;MHLNPAEKEKLQIFLASELALKRKARGLKLNYPEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDVMEGVPEMIDDI QAEATFPDGTKLVTVHNPIS ; A ? 2 'polypeptide(L)' no no ;MSNNNYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPG EEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE ; ;MSNNNYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPG EEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE ; B ? 3 'polypeptide(L)' no yes ;MKINRQQYAESYGPTVGDQVRLADTDLWIEVEKDYTTYGDEANFGGGKVLREGMGENGTYTRTENVLDLLLTNALILDYT GIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGG GTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGL(KCX)IHEDWGATPASIDRSL TVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHL DMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKN GSDNFRAKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVMG RRMYGTVGDLIHDTNITFMSKSSIQQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCE PVKELPMAQRYFLF ; ;MKINRQQYAESYGPTVGDQVRLADTDLWIEVEKDYTTYGDEANFGGGKVLREGMGENGTYTRTENVLDLLLTNALILDYT GIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGG GTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLKIHEDWGATPASIDRSLTVAD EADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLM VCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDN FRAKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVMGRRMY GTVGDLIHDTNITFMSKSSIQQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKE LPMAQRYFLF ; C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'NICKEL (II) ION' NI 5 'HYDROXIDE ION' OH 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CXM n 1 2 HIS n 1 3 LEU n 1 4 ASN n 1 5 PRO n 1 6 ALA n 1 7 GLU n 1 8 LYS n 1 9 GLU n 1 10 LYS n 1 11 LEU n 1 12 GLN n 1 13 ILE n 1 14 PHE n 1 15 LEU n 1 16 ALA n 1 17 SER n 1 18 GLU n 1 19 LEU n 1 20 ALA n 1 21 LEU n 1 22 LYS n 1 23 ARG n 1 24 LYS n 1 25 ALA n 1 26 ARG n 1 27 GLY n 1 28 LEU n 1 29 LYS n 1 30 LEU n 1 31 ASN n 1 32 TYR n 1 33 PRO n 1 34 GLU n 1 35 ALA n 1 36 VAL n 1 37 ALA n 1 38 ILE n 1 39 ILE n 1 40 THR n 1 41 SER n 1 42 PHE n 1 43 ILE n 1 44 MET n 1 45 GLU n 1 46 GLY n 1 47 ALA n 1 48 ARG n 1 49 ASP n 1 50 GLY n 1 51 LYS n 1 52 THR n 1 53 VAL n 1 54 ALA n 1 55 MET n 1 56 LEU n 1 57 MET n 1 58 GLU n 1 59 GLU n 1 60 GLY n 1 61 LYS n 1 62 HIS n 1 63 VAL n 1 64 LEU n 1 65 THR n 1 66 ARG n 1 67 ASP n 1 68 ASP n 1 69 VAL n 1 70 MET n 1 71 GLU n 1 72 GLY n 1 73 VAL n 1 74 PRO n 1 75 GLU n 1 76 MET n 1 77 ILE n 1 78 ASP n 1 79 ASP n 1 80 ILE n 1 81 GLN n 1 82 ALA n 1 83 GLU n 1 84 ALA n 1 85 THR n 1 86 PHE n 1 87 PRO n 1 88 ASP n 1 89 GLY n 1 90 THR n 1 91 LYS n 1 92 LEU n 1 93 VAL n 1 94 THR n 1 95 VAL n 1 96 HIS n 1 97 ASN n 1 98 PRO n 1 99 ILE n 1 100 SER n 2 1 MET n 2 2 SER n 2 3 ASN n 2 4 ASN n 2 5 ASN n 2 6 TYR n 2 7 ILE n 2 8 VAL n 2 9 PRO n 2 10 GLY n 2 11 GLU n 2 12 TYR n 2 13 ARG n 2 14 VAL n 2 15 ALA n 2 16 GLU n 2 17 GLY n 2 18 GLU n 2 19 ILE n 2 20 GLU n 2 21 ILE n 2 22 ASN n 2 23 ALA n 2 24 GLY n 2 25 ARG n 2 26 GLU n 2 27 LYS n 2 28 THR n 2 29 THR n 2 30 ILE n 2 31 ARG n 2 32 VAL n 2 33 SER n 2 34 ASN n 2 35 THR n 2 36 GLY n 2 37 ASP n 2 38 ARG n 2 39 PRO n 2 40 ILE n 2 41 GLN n 2 42 VAL n 2 43 GLY n 2 44 SER n 2 45 HIS n 2 46 ILE n 2 47 HIS n 2 48 PHE n 2 49 VAL n 2 50 GLU n 2 51 VAL n 2 52 ASN n 2 53 LYS n 2 54 GLU n 2 55 LEU n 2 56 LEU n 2 57 PHE n 2 58 ASP n 2 59 ARG n 2 60 ALA n 2 61 GLU n 2 62 GLY n 2 63 ILE n 2 64 GLY n 2 65 ARG n 2 66 ARG n 2 67 LEU n 2 68 ASN n 2 69 ILE n 2 70 PRO n 2 71 SER n 2 72 GLY n 2 73 THR n 2 74 ALA n 2 75 ALA n 2 76 ARG n 2 77 PHE n 2 78 GLU n 2 79 PRO n 2 80 GLY n 2 81 GLU n 2 82 GLU n 2 83 MET n 2 84 GLU n 2 85 VAL n 2 86 GLU n 2 87 LEU n 2 88 THR n 2 89 GLU n 2 90 LEU n 2 91 GLY n 2 92 GLY n 2 93 ASN n 2 94 ARG n 2 95 GLU n 2 96 VAL n 2 97 PHE n 2 98 GLY n 2 99 ILE n 2 100 SER n 2 101 ASP n 2 102 LEU n 2 103 THR n 2 104 ASN n 2 105 GLY n 2 106 SER n 2 107 VAL n 2 108 ASP n 2 109 ASN n 2 110 LYS n 2 111 GLU n 2 112 LEU n 2 113 ILE n 2 114 LEU n 2 115 GLN n 2 116 ARG n 2 117 ALA n 2 118 LYS n 2 119 GLU n 2 120 LEU n 2 121 GLY n 2 122 TYR n 2 123 LYS n 2 124 GLY n 2 125 VAL n 2 126 GLU n 3 1 MET n 3 2 LYS n 3 3 ILE n 3 4 ASN n 3 5 ARG n 3 6 GLN n 3 7 GLN n 3 8 TYR n 3 9 ALA n 3 10 GLU n 3 11 SER n 3 12 TYR n 3 13 GLY n 3 14 PRO n 3 15 THR n 3 16 VAL n 3 17 GLY n 3 18 ASP n 3 19 GLN n 3 20 VAL n 3 21 ARG n 3 22 LEU n 3 23 ALA n 3 24 ASP n 3 25 THR n 3 26 ASP n 3 27 LEU n 3 28 TRP n 3 29 ILE n 3 30 GLU n 3 31 VAL n 3 32 GLU n 3 33 LYS n 3 34 ASP n 3 35 TYR n 3 36 THR n 3 37 THR n 3 38 TYR n 3 39 GLY n 3 40 ASP n 3 41 GLU n 3 42 ALA n 3 43 ASN n 3 44 PHE n 3 45 GLY n 3 46 GLY n 3 47 GLY n 3 48 LYS n 3 49 VAL n 3 50 LEU n 3 51 ARG n 3 52 GLU n 3 53 GLY n 3 54 MET n 3 55 GLY n 3 56 GLU n 3 57 ASN n 3 58 GLY n 3 59 THR n 3 60 TYR n 3 61 THR n 3 62 ARG n 3 63 THR n 3 64 GLU n 3 65 ASN n 3 66 VAL n 3 67 LEU n 3 68 ASP n 3 69 LEU n 3 70 LEU n 3 71 LEU n 3 72 THR n 3 73 ASN n 3 74 ALA n 3 75 LEU n 3 76 ILE n 3 77 LEU n 3 78 ASP n 3 79 TYR n 3 80 THR n 3 81 GLY n 3 82 ILE n 3 83 TYR n 3 84 LYS n 3 85 ALA n 3 86 ASP n 3 87 ILE n 3 88 GLY n 3 89 VAL n 3 90 LYS n 3 91 ASP n 3 92 GLY n 3 93 TYR n 3 94 ILE n 3 95 VAL n 3 96 GLY n 3 97 ILE n 3 98 GLY n 3 99 LYS n 3 100 GLY n 3 101 GLY n 3 102 ASN n 3 103 PRO n 3 104 ASP n 3 105 ILE n 3 106 MET n 3 107 ASP n 3 108 GLY n 3 109 VAL n 3 110 THR n 3 111 PRO n 3 112 ASN n 3 113 MET n 3 114 ILE n 3 115 VAL n 3 116 GLY n 3 117 THR n 3 118 ALA n 3 119 THR n 3 120 GLU n 3 121 VAL n 3 122 ILE n 3 123 ALA n 3 124 ALA n 3 125 GLU n 3 126 GLY n 3 127 LYS n 3 128 ILE n 3 129 VAL n 3 130 THR n 3 131 ALA n 3 132 GLY n 3 133 GLY n 3 134 ILE n 3 135 ASP n 3 136 THR n 3 137 HIS n 3 138 VAL n 3 139 HIS n 3 140 PHE n 3 141 ILE n 3 142 ASN n 3 143 PRO n 3 144 ASP n 3 145 GLN n 3 146 VAL n 3 147 ASP n 3 148 VAL n 3 149 ALA n 3 150 LEU n 3 151 ALA n 3 152 ASN n 3 153 GLY n 3 154 ILE n 3 155 THR n 3 156 THR n 3 157 LEU n 3 158 PHE n 3 159 GLY n 3 160 GLY n 3 161 GLY n 3 162 THR n 3 163 GLY n 3 164 PRO n 3 165 ALA n 3 166 GLU n 3 167 GLY n 3 168 SER n 3 169 LYS n 3 170 ALA n 3 171 THR n 3 172 THR n 3 173 VAL n 3 174 THR n 3 175 PRO n 3 176 GLY n 3 177 PRO n 3 178 TRP n 3 179 ASN n 3 180 ILE n 3 181 GLU n 3 182 LYS n 3 183 MET n 3 184 LEU n 3 185 LYS n 3 186 SER n 3 187 THR n 3 188 GLU n 3 189 GLY n 3 190 LEU n 3 191 PRO n 3 192 ILE n 3 193 ASN n 3 194 VAL n 3 195 GLY n 3 196 ILE n 3 197 LEU n 3 198 GLY n 3 199 LYS n 3 200 GLY n 3 201 HIS n 3 202 GLY n 3 203 SER n 3 204 SER n 3 205 ILE n 3 206 ALA n 3 207 PRO n 3 208 ILE n 3 209 MET n 3 210 GLU n 3 211 GLN n 3 212 ILE n 3 213 ASP n 3 214 ALA n 3 215 GLY n 3 216 ALA n 3 217 ALA n 3 218 GLY n 3 219 LEU n 3 220 KCX n 3 221 ILE n 3 222 HIS n 3 223 GLU n 3 224 ASP n 3 225 TRP n 3 226 GLY n 3 227 ALA n 3 228 THR n 3 229 PRO n 3 230 ALA n 3 231 SER n 3 232 ILE n 3 233 ASP n 3 234 ARG n 3 235 SER n 3 236 LEU n 3 237 THR n 3 238 VAL n 3 239 ALA n 3 240 ASP n 3 241 GLU n 3 242 ALA n 3 243 ASP n 3 244 VAL n 3 245 GLN n 3 246 VAL n 3 247 ALA n 3 248 ILE n 3 249 HIS n 3 250 SER n 3 251 ASP n 3 252 THR n 3 253 LEU n 3 254 ASN n 3 255 GLU n 3 256 ALA n 3 257 GLY n 3 258 PHE n 3 259 LEU n 3 260 GLU n 3 261 ASP n 3 262 THR n 3 263 LEU n 3 264 ARG n 3 265 ALA n 3 266 ILE n 3 267 ASN n 3 268 GLY n 3 269 ARG n 3 270 VAL n 3 271 ILE n 3 272 HIS n 3 273 SER n 3 274 PHE n 3 275 HIS n 3 276 VAL n 3 277 GLU n 3 278 GLY n 3 279 ALA n 3 280 GLY n 3 281 GLY n 3 282 GLY n 3 283 HIS n 3 284 ALA n 3 285 PRO n 3 286 ASP n 3 287 ILE n 3 288 MET n 3 289 ALA n 3 290 MET n 3 291 ALA n 3 292 GLY n 3 293 HIS n 3 294 PRO n 3 295 ASN n 3 296 VAL n 3 297 LEU n 3 298 PRO n 3 299 SER n 3 300 SER n 3 301 THR n 3 302 ASN n 3 303 PRO n 3 304 THR n 3 305 ARG n 3 306 PRO n 3 307 PHE n 3 308 THR n 3 309 VAL n 3 310 ASN n 3 311 THR n 3 312 ILE n 3 313 ASP n 3 314 GLU n 3 315 HIS n 3 316 LEU n 3 317 ASP n 3 318 MET n 3 319 LEU n 3 320 MET n 3 321 VAL n 3 322 CYS n 3 323 HIS n 3 324 HIS n 3 325 LEU n 3 326 LYS n 3 327 GLN n 3 328 ASN n 3 329 ILE n 3 330 PRO n 3 331 GLU n 3 332 ASP n 3 333 VAL n 3 334 ALA n 3 335 PHE n 3 336 ALA n 3 337 ASP n 3 338 SER n 3 339 ARG n 3 340 ILE n 3 341 ARG n 3 342 PRO n 3 343 GLU n 3 344 THR n 3 345 ILE n 3 346 ALA n 3 347 ALA n 3 348 GLU n 3 349 ASP n 3 350 ILE n 3 351 LEU n 3 352 HIS n 3 353 ASP n 3 354 LEU n 3 355 GLY n 3 356 ILE n 3 357 ILE n 3 358 SER n 3 359 MET n 3 360 MET n 3 361 SER n 3 362 THR n 3 363 ASP n 3 364 ALA n 3 365 LEU n 3 366 ALA n 3 367 MET n 3 368 GLY n 3 369 ARG n 3 370 ALA n 3 371 GLY n 3 372 GLU n 3 373 MET n 3 374 VAL n 3 375 LEU n 3 376 ARG n 3 377 THR n 3 378 TRP n 3 379 GLN n 3 380 THR n 3 381 ALA n 3 382 ASP n 3 383 LYS n 3 384 MET n 3 385 LYS n 3 386 LYS n 3 387 GLN n 3 388 ARG n 3 389 GLY n 3 390 PRO n 3 391 LEU n 3 392 ALA n 3 393 GLU n 3 394 GLU n 3 395 LYS n 3 396 ASN n 3 397 GLY n 3 398 SER n 3 399 ASP n 3 400 ASN n 3 401 PHE n 3 402 ARG n 3 403 ALA n 3 404 LYS n 3 405 ARG n 3 406 TYR n 3 407 VAL n 3 408 SER n 3 409 LYS n 3 410 TYR n 3 411 THR n 3 412 ILE n 3 413 ASN n 3 414 PRO n 3 415 ALA n 3 416 ILE n 3 417 ALA n 3 418 GLN n 3 419 GLY n 3 420 ILE n 3 421 ALA n 3 422 HIS n 3 423 GLU n 3 424 VAL n 3 425 GLY n 3 426 SER n 3 427 ILE n 3 428 GLU n 3 429 GLU n 3 430 GLY n 3 431 LYS n 3 432 PHE n 3 433 ALA n 3 434 ASP n 3 435 LEU n 3 436 VAL n 3 437 LEU n 3 438 TRP n 3 439 GLU n 3 440 PRO n 3 441 LYS n 3 442 PHE n 3 443 PHE n 3 444 GLY n 3 445 VAL n 3 446 LYS n 3 447 ALA n 3 448 ASP n 3 449 ARG n 3 450 VAL n 3 451 ILE n 3 452 LYS n 3 453 GLY n 3 454 GLY n 3 455 ILE n 3 456 ILE n 3 457 ALA n 3 458 TYR n 3 459 ALA n 3 460 GLN n 3 461 ILE n 3 462 GLY n 3 463 ASP n 3 464 PRO n 3 465 SER n 3 466 ALA n 3 467 SER n 3 468 ILE n 3 469 PRO n 3 470 THR n 3 471 PRO n 3 472 GLN n 3 473 PRO n 3 474 VAL n 3 475 MET n 3 476 GLY n 3 477 ARG n 3 478 ARG n 3 479 MET n 3 480 TYR n 3 481 GLY n 3 482 THR n 3 483 VAL n 3 484 GLY n 3 485 ASP n 3 486 LEU n 3 487 ILE n 3 488 HIS n 3 489 ASP n 3 490 THR n 3 491 ASN n 3 492 ILE n 3 493 THR n 3 494 PHE n 3 495 MET n 3 496 SER n 3 497 LYS n 3 498 SER n 3 499 SER n 3 500 ILE n 3 501 GLN n 3 502 GLN n 3 503 GLY n 3 504 VAL n 3 505 PRO n 3 506 ALA n 3 507 LYS n 3 508 LEU n 3 509 GLY n 3 510 LEU n 3 511 LYS n 3 512 ARG n 3 513 ARG n 3 514 ILE n 3 515 GLY n 3 516 THR n 3 517 VAL n 3 518 LYS n 3 519 ASN n 3 520 CYS n 3 521 ARG n 3 522 ASN n 3 523 ILE n 3 524 GLY n 3 525 LYS n 3 526 LYS n 3 527 ASP n 3 528 MET n 3 529 LYS n 3 530 TRP n 3 531 ASN n 3 532 ASP n 3 533 VAL n 3 534 THR n 3 535 THR n 3 536 ASP n 3 537 ILE n 3 538 ASP n 3 539 ILE n 3 540 ASN n 3 541 PRO n 3 542 GLU n 3 543 THR n 3 544 TYR n 3 545 GLU n 3 546 VAL n 3 547 LYS n 3 548 VAL n 3 549 ASP n 3 550 GLY n 3 551 GLU n 3 552 VAL n 3 553 LEU n 3 554 THR n 3 555 CYS n 3 556 GLU n 3 557 PRO n 3 558 VAL n 3 559 LYS n 3 560 GLU n 3 561 LEU n 3 562 PRO n 3 563 MET n 3 564 ALA n 3 565 GLN n 3 566 ARG n 3 567 TYR n 3 568 PHE n 3 569 LEU n 3 570 PHE n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 100 ? 'Sporosarcina pasteurii' 1474 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 126 ? 'Sporosarcina pasteurii' 1474 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 1 570 ? 'Sporosarcina pasteurii' 1474 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CXM 'L-peptide linking' n N-CARBOXYMETHIONINE ? 'C6 H11 N O4 S' 193.221 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KCX 'L-peptide linking' n 'LYSINE NZ-CARBOXYLIC ACID' ? 'C7 H14 N2 O4' 190.197 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 OH non-polymer . 'HYDROXIDE ION' ? 'H O -1' 17.007 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CXM 1 1 1 CXM CXM A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 MET 57 57 57 MET MET A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 SER 100 100 100 SER SER A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 SER 2 2 ? ? ? B . n B 2 3 ASN 3 3 ? ? ? B . n B 2 4 ASN 4 4 ? ? ? B . n B 2 5 ASN 5 5 5 ASN ASN B . n B 2 6 TYR 6 6 6 TYR TYR B . n B 2 7 ILE 7 7 7 ILE ILE B . n B 2 8 VAL 8 8 8 VAL VAL B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 GLU 11 11 11 GLU GLU B . n B 2 12 TYR 12 12 12 TYR TYR B . n B 2 13 ARG 13 13 13 ARG ARG B . n B 2 14 VAL 14 14 14 VAL VAL B . n B 2 15 ALA 15 15 15 ALA ALA B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 GLY 17 17 17 GLY GLY B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 ILE 19 19 19 ILE ILE B . n B 2 20 GLU 20 20 20 GLU GLU B . n B 2 21 ILE 21 21 21 ILE ILE B . n B 2 22 ASN 22 22 22 ASN ASN B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 GLY 24 24 24 GLY GLY B . n B 2 25 ARG 25 25 25 ARG ARG B . n B 2 26 GLU 26 26 26 GLU GLU B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 THR 29 29 29 THR THR B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 ARG 31 31 31 ARG ARG B . n B 2 32 VAL 32 32 32 VAL VAL B . n B 2 33 SER 33 33 33 SER SER B . n B 2 34 ASN 34 34 34 ASN ASN B . n B 2 35 THR 35 35 35 THR THR B . n B 2 36 GLY 36 36 36 GLY GLY B . n B 2 37 ASP 37 37 37 ASP ASP B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 PRO 39 39 39 PRO PRO B . n B 2 40 ILE 40 40 40 ILE ILE B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 VAL 42 42 42 VAL VAL B . n B 2 43 GLY 43 43 43 GLY GLY B . n B 2 44 SER 44 44 44 SER SER B . n B 2 45 HIS 45 45 45 HIS HIS B . n B 2 46 ILE 46 46 46 ILE ILE B . n B 2 47 HIS 47 47 47 HIS HIS B . n B 2 48 PHE 48 48 48 PHE PHE B . n B 2 49 VAL 49 49 49 VAL VAL B . n B 2 50 GLU 50 50 50 GLU GLU B . n B 2 51 VAL 51 51 51 VAL VAL B . n B 2 52 ASN 52 52 52 ASN ASN B . n B 2 53 LYS 53 53 53 LYS LYS B . n B 2 54 GLU 54 54 54 GLU GLU B . n B 2 55 LEU 55 55 55 LEU LEU B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 PHE 57 57 57 PHE PHE B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 ARG 59 59 59 ARG ARG B . n B 2 60 ALA 60 60 60 ALA ALA B . n B 2 61 GLU 61 61 61 GLU GLU B . n B 2 62 GLY 62 62 62 GLY GLY B . n B 2 63 ILE 63 63 63 ILE ILE B . n B 2 64 GLY 64 64 64 GLY GLY B . n B 2 65 ARG 65 65 65 ARG ARG B . n B 2 66 ARG 66 66 66 ARG ARG B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 ASN 68 68 68 ASN ASN B . n B 2 69 ILE 69 69 69 ILE ILE B . n B 2 70 PRO 70 70 70 PRO PRO B . n B 2 71 SER 71 71 71 SER SER B . n B 2 72 GLY 72 72 72 GLY GLY B . n B 2 73 THR 73 73 73 THR THR B . n B 2 74 ALA 74 74 74 ALA ALA B . n B 2 75 ALA 75 75 75 ALA ALA B . n B 2 76 ARG 76 76 76 ARG ARG B . n B 2 77 PHE 77 77 77 PHE PHE B . n B 2 78 GLU 78 78 78 GLU GLU B . n B 2 79 PRO 79 79 79 PRO PRO B . n B 2 80 GLY 80 80 80 GLY GLY B . n B 2 81 GLU 81 81 81 GLU GLU B . n B 2 82 GLU 82 82 82 GLU GLU B . n B 2 83 MET 83 83 83 MET MET B . n B 2 84 GLU 84 84 84 GLU GLU B . n B 2 85 VAL 85 85 85 VAL VAL B . n B 2 86 GLU 86 86 86 GLU GLU B . n B 2 87 LEU 87 87 87 LEU LEU B . n B 2 88 THR 88 88 88 THR THR B . n B 2 89 GLU 89 89 89 GLU GLU B . n B 2 90 LEU 90 90 90 LEU LEU B . n B 2 91 GLY 91 91 91 GLY GLY B . n B 2 92 GLY 92 92 92 GLY GLY B . n B 2 93 ASN 93 93 93 ASN ASN B . n B 2 94 ARG 94 94 94 ARG ARG B . n B 2 95 GLU 95 95 95 GLU GLU B . n B 2 96 VAL 96 96 96 VAL VAL B . n B 2 97 PHE 97 97 97 PHE PHE B . n B 2 98 GLY 98 98 98 GLY GLY B . n B 2 99 ILE 99 99 99 ILE ILE B . n B 2 100 SER 100 100 100 SER SER B . n B 2 101 ASP 101 101 101 ASP ASP B . n B 2 102 LEU 102 102 102 LEU LEU B . n B 2 103 THR 103 103 103 THR THR B . n B 2 104 ASN 104 104 104 ASN ASN B . n B 2 105 GLY 105 105 105 GLY GLY B . n B 2 106 SER 106 106 106 SER SER B . n B 2 107 VAL 107 107 107 VAL VAL B . n B 2 108 ASP 108 108 108 ASP ASP B . n B 2 109 ASN 109 109 109 ASN ASN B . n B 2 110 LYS 110 110 110 LYS LYS B . n B 2 111 GLU 111 111 111 GLU GLU B . n B 2 112 LEU 112 112 112 LEU LEU B . n B 2 113 ILE 113 113 113 ILE ILE B . n B 2 114 LEU 114 114 114 LEU LEU B . n B 2 115 GLN 115 115 115 GLN GLN B . n B 2 116 ARG 116 116 116 ARG ARG B . n B 2 117 ALA 117 117 117 ALA ALA B . n B 2 118 LYS 118 118 118 LYS LYS B . n B 2 119 GLU 119 119 119 GLU GLU B . n B 2 120 LEU 120 120 120 LEU LEU B . n B 2 121 GLY 121 121 121 GLY GLY B . n B 2 122 TYR 122 122 122 TYR TYR B . n B 2 123 LYS 123 123 123 LYS LYS B . n B 2 124 GLY 124 124 124 GLY GLY B . n B 2 125 VAL 125 125 125 VAL VAL B . n B 2 126 GLU 126 126 126 GLU GLU B . n C 3 1 MET 1 1 1 MET MET C . n C 3 2 LYS 2 2 2 LYS LYS C . n C 3 3 ILE 3 3 3 ILE ILE C . n C 3 4 ASN 4 4 4 ASN ASN C . n C 3 5 ARG 5 5 5 ARG ARG C . n C 3 6 GLN 6 6 6 GLN GLN C . n C 3 7 GLN 7 7 7 GLN GLN C . n C 3 8 TYR 8 8 8 TYR TYR C . n C 3 9 ALA 9 9 9 ALA ALA C . n C 3 10 GLU 10 10 10 GLU GLU C . n C 3 11 SER 11 11 11 SER SER C . n C 3 12 TYR 12 12 12 TYR TYR C . n C 3 13 GLY 13 13 13 GLY GLY C . n C 3 14 PRO 14 14 14 PRO PRO C . n C 3 15 THR 15 15 15 THR THR C . n C 3 16 VAL 16 16 16 VAL VAL C . n C 3 17 GLY 17 17 17 GLY GLY C . n C 3 18 ASP 18 18 18 ASP ASP C . n C 3 19 GLN 19 19 19 GLN GLN C . n C 3 20 VAL 20 20 20 VAL VAL C . n C 3 21 ARG 21 21 21 ARG ARG C . n C 3 22 LEU 22 22 22 LEU LEU C . n C 3 23 ALA 23 23 23 ALA ALA C . n C 3 24 ASP 24 24 24 ASP ASP C . n C 3 25 THR 25 25 25 THR THR C . n C 3 26 ASP 26 26 26 ASP ASP C . n C 3 27 LEU 27 27 27 LEU LEU C . n C 3 28 TRP 28 28 28 TRP TRP C . n C 3 29 ILE 29 29 29 ILE ILE C . n C 3 30 GLU 30 30 30 GLU GLU C . n C 3 31 VAL 31 31 31 VAL VAL C . n C 3 32 GLU 32 32 32 GLU GLU C . n C 3 33 LYS 33 33 33 LYS LYS C . n C 3 34 ASP 34 34 34 ASP ASP C . n C 3 35 TYR 35 35 35 TYR TYR C . n C 3 36 THR 36 36 36 THR THR C . n C 3 37 THR 37 37 37 THR THR C . n C 3 38 TYR 38 38 38 TYR TYR C . n C 3 39 GLY 39 39 39 GLY GLY C . n C 3 40 ASP 40 40 40 ASP ASP C . n C 3 41 GLU 41 41 41 GLU GLU C . n C 3 42 ALA 42 42 42 ALA ALA C . n C 3 43 ASN 43 43 43 ASN ASN C . n C 3 44 PHE 44 44 44 PHE PHE C . n C 3 45 GLY 45 45 45 GLY GLY C . n C 3 46 GLY 46 46 46 GLY GLY C . n C 3 47 GLY 47 47 47 GLY GLY C . n C 3 48 LYS 48 48 48 LYS LYS C . n C 3 49 VAL 49 49 49 VAL VAL C . n C 3 50 LEU 50 50 50 LEU LEU C . n C 3 51 ARG 51 51 51 ARG ARG C . n C 3 52 GLU 52 52 52 GLU GLU C . n C 3 53 GLY 53 53 53 GLY GLY C . n C 3 54 MET 54 54 54 MET MET C . n C 3 55 GLY 55 55 55 GLY GLY C . n C 3 56 GLU 56 56 56 GLU GLU C . n C 3 57 ASN 57 57 57 ASN ASN C . n C 3 58 GLY 58 58 58 GLY GLY C . n C 3 59 THR 59 59 59 THR THR C . n C 3 60 TYR 60 60 60 TYR TYR C . n C 3 61 THR 61 61 61 THR THR C . n C 3 62 ARG 62 62 62 ARG ARG C . n C 3 63 THR 63 63 63 THR THR C . n C 3 64 GLU 64 64 64 GLU GLU C . n C 3 65 ASN 65 65 65 ASN ASN C . n C 3 66 VAL 66 66 66 VAL VAL C . n C 3 67 LEU 67 67 67 LEU LEU C . n C 3 68 ASP 68 68 68 ASP ASP C . n C 3 69 LEU 69 69 69 LEU LEU C . n C 3 70 LEU 70 70 70 LEU LEU C . n C 3 71 LEU 71 71 71 LEU LEU C . n C 3 72 THR 72 72 72 THR THR C . n C 3 73 ASN 73 73 73 ASN ASN C . n C 3 74 ALA 74 74 74 ALA ALA C . n C 3 75 LEU 75 75 75 LEU LEU C . n C 3 76 ILE 76 76 76 ILE ILE C . n C 3 77 LEU 77 77 77 LEU LEU C . n C 3 78 ASP 78 78 78 ASP ASP C . n C 3 79 TYR 79 79 79 TYR TYR C . n C 3 80 THR 80 80 80 THR THR C . n C 3 81 GLY 81 81 81 GLY GLY C . n C 3 82 ILE 82 82 82 ILE ILE C . n C 3 83 TYR 83 83 83 TYR TYR C . n C 3 84 LYS 84 84 84 LYS LYS C . n C 3 85 ALA 85 85 85 ALA ALA C . n C 3 86 ASP 86 86 86 ASP ASP C . n C 3 87 ILE 87 87 87 ILE ILE C . n C 3 88 GLY 88 88 88 GLY GLY C . n C 3 89 VAL 89 89 89 VAL VAL C . n C 3 90 LYS 90 90 90 LYS LYS C . n C 3 91 ASP 91 91 91 ASP ASP C . n C 3 92 GLY 92 92 92 GLY GLY C . n C 3 93 TYR 93 93 93 TYR TYR C . n C 3 94 ILE 94 94 94 ILE ILE C . n C 3 95 VAL 95 95 95 VAL VAL C . n C 3 96 GLY 96 96 96 GLY GLY C . n C 3 97 ILE 97 97 97 ILE ILE C . n C 3 98 GLY 98 98 98 GLY GLY C . n C 3 99 LYS 99 99 99 LYS LYS C . n C 3 100 GLY 100 100 100 GLY GLY C . n C 3 101 GLY 101 101 101 GLY GLY C . n C 3 102 ASN 102 102 102 ASN ASN C . n C 3 103 PRO 103 103 103 PRO PRO C . n C 3 104 ASP 104 104 104 ASP ASP C . n C 3 105 ILE 105 105 105 ILE ILE C . n C 3 106 MET 106 106 106 MET MET C . n C 3 107 ASP 107 107 107 ASP ASP C . n C 3 108 GLY 108 108 108 GLY GLY C . n C 3 109 VAL 109 109 109 VAL VAL C . n C 3 110 THR 110 110 110 THR THR C . n C 3 111 PRO 111 111 111 PRO PRO C . n C 3 112 ASN 112 112 112 ASN ASN C . n C 3 113 MET 113 113 113 MET MET C . n C 3 114 ILE 114 114 114 ILE ILE C . n C 3 115 VAL 115 115 115 VAL VAL C . n C 3 116 GLY 116 116 116 GLY GLY C . n C 3 117 THR 117 117 117 THR THR C . n C 3 118 ALA 118 118 118 ALA ALA C . n C 3 119 THR 119 119 119 THR THR C . n C 3 120 GLU 120 120 120 GLU GLU C . n C 3 121 VAL 121 121 121 VAL VAL C . n C 3 122 ILE 122 122 122 ILE ILE C . n C 3 123 ALA 123 123 123 ALA ALA C . n C 3 124 ALA 124 124 124 ALA ALA C . n C 3 125 GLU 125 125 125 GLU GLU C . n C 3 126 GLY 126 126 126 GLY GLY C . n C 3 127 LYS 127 127 127 LYS LYS C . n C 3 128 ILE 128 128 128 ILE ILE C . n C 3 129 VAL 129 129 129 VAL VAL C . n C 3 130 THR 130 130 130 THR THR C . n C 3 131 ALA 131 131 131 ALA ALA C . n C 3 132 GLY 132 132 132 GLY GLY C . n C 3 133 GLY 133 133 133 GLY GLY C . n C 3 134 ILE 134 134 134 ILE ILE C . n C 3 135 ASP 135 135 135 ASP ASP C . n C 3 136 THR 136 136 136 THR THR C . n C 3 137 HIS 137 137 137 HIS HIS C . n C 3 138 VAL 138 138 138 VAL VAL C . n C 3 139 HIS 139 139 139 HIS HIS C . n C 3 140 PHE 140 140 140 PHE PHE C . n C 3 141 ILE 141 141 141 ILE ILE C . n C 3 142 ASN 142 142 142 ASN ASN C . n C 3 143 PRO 143 143 143 PRO PRO C . n C 3 144 ASP 144 144 144 ASP ASP C . n C 3 145 GLN 145 145 145 GLN GLN C . n C 3 146 VAL 146 146 146 VAL VAL C . n C 3 147 ASP 147 147 147 ASP ASP C . n C 3 148 VAL 148 148 148 VAL VAL C . n C 3 149 ALA 149 149 149 ALA ALA C . n C 3 150 LEU 150 150 150 LEU LEU C . n C 3 151 ALA 151 151 151 ALA ALA C . n C 3 152 ASN 152 152 152 ASN ASN C . n C 3 153 GLY 153 153 153 GLY GLY C . n C 3 154 ILE 154 154 154 ILE ILE C . n C 3 155 THR 155 155 155 THR THR C . n C 3 156 THR 156 156 156 THR THR C . n C 3 157 LEU 157 157 157 LEU LEU C . n C 3 158 PHE 158 158 158 PHE PHE C . n C 3 159 GLY 159 159 159 GLY GLY C . n C 3 160 GLY 160 160 160 GLY GLY C . n C 3 161 GLY 161 161 161 GLY GLY C . n C 3 162 THR 162 162 162 THR THR C . n C 3 163 GLY 163 163 163 GLY GLY C . n C 3 164 PRO 164 164 164 PRO PRO C . n C 3 165 ALA 165 165 165 ALA ALA C . n C 3 166 GLU 166 166 166 GLU GLU C . n C 3 167 GLY 167 167 167 GLY GLY C . n C 3 168 SER 168 168 168 SER SER C . n C 3 169 LYS 169 169 169 LYS LYS C . n C 3 170 ALA 170 170 170 ALA ALA C . n C 3 171 THR 171 171 171 THR THR C . n C 3 172 THR 172 172 172 THR THR C . n C 3 173 VAL 173 173 173 VAL VAL C . n C 3 174 THR 174 174 174 THR THR C . n C 3 175 PRO 175 175 175 PRO PRO C . n C 3 176 GLY 176 176 176 GLY GLY C . n C 3 177 PRO 177 177 177 PRO PRO C . n C 3 178 TRP 178 178 178 TRP TRP C . n C 3 179 ASN 179 179 179 ASN ASN C . n C 3 180 ILE 180 180 180 ILE ILE C . n C 3 181 GLU 181 181 181 GLU GLU C . n C 3 182 LYS 182 182 182 LYS LYS C . n C 3 183 MET 183 183 183 MET MET C . n C 3 184 LEU 184 184 184 LEU LEU C . n C 3 185 LYS 185 185 185 LYS LYS C . n C 3 186 SER 186 186 186 SER SER C . n C 3 187 THR 187 187 187 THR THR C . n C 3 188 GLU 188 188 188 GLU GLU C . n C 3 189 GLY 189 189 189 GLY GLY C . n C 3 190 LEU 190 190 190 LEU LEU C . n C 3 191 PRO 191 191 191 PRO PRO C . n C 3 192 ILE 192 192 192 ILE ILE C . n C 3 193 ASN 193 193 193 ASN ASN C . n C 3 194 VAL 194 194 194 VAL VAL C . n C 3 195 GLY 195 195 195 GLY GLY C . n C 3 196 ILE 196 196 196 ILE ILE C . n C 3 197 LEU 197 197 197 LEU LEU C . n C 3 198 GLY 198 198 198 GLY GLY C . n C 3 199 LYS 199 199 199 LYS LYS C . n C 3 200 GLY 200 200 200 GLY GLY C . n C 3 201 HIS 201 201 201 HIS HIS C . n C 3 202 GLY 202 202 202 GLY GLY C . n C 3 203 SER 203 203 203 SER SER C . n C 3 204 SER 204 204 204 SER SER C . n C 3 205 ILE 205 205 205 ILE ILE C . n C 3 206 ALA 206 206 206 ALA ALA C . n C 3 207 PRO 207 207 207 PRO PRO C . n C 3 208 ILE 208 208 208 ILE ILE C . n C 3 209 MET 209 209 209 MET MET C . n C 3 210 GLU 210 210 210 GLU GLU C . n C 3 211 GLN 211 211 211 GLN GLN C . n C 3 212 ILE 212 212 212 ILE ILE C . n C 3 213 ASP 213 213 213 ASP ASP C . n C 3 214 ALA 214 214 214 ALA ALA C . n C 3 215 GLY 215 215 215 GLY GLY C . n C 3 216 ALA 216 216 216 ALA ALA C . n C 3 217 ALA 217 217 217 ALA ALA C . n C 3 218 GLY 218 218 218 GLY GLY C . n C 3 219 LEU 219 219 219 LEU LEU C . n C 3 220 KCX 220 220 220 KCX KCX C . n C 3 221 ILE 221 221 221 ILE ILE C . n C 3 222 HIS 222 222 222 HIS HIS C . n C 3 223 GLU 223 223 223 GLU GLU C . n C 3 224 ASP 224 224 224 ASP ASP C . n C 3 225 TRP 225 225 225 TRP TRP C . n C 3 226 GLY 226 226 226 GLY GLY C . n C 3 227 ALA 227 227 227 ALA ALA C . n C 3 228 THR 228 228 228 THR THR C . n C 3 229 PRO 229 229 229 PRO PRO C . n C 3 230 ALA 230 230 230 ALA ALA C . n C 3 231 SER 231 231 231 SER SER C . n C 3 232 ILE 232 232 232 ILE ILE C . n C 3 233 ASP 233 233 233 ASP ASP C . n C 3 234 ARG 234 234 234 ARG ARG C . n C 3 235 SER 235 235 235 SER SER C . n C 3 236 LEU 236 236 236 LEU LEU C . n C 3 237 THR 237 237 237 THR THR C . n C 3 238 VAL 238 238 238 VAL VAL C . n C 3 239 ALA 239 239 239 ALA ALA C . n C 3 240 ASP 240 240 240 ASP ASP C . n C 3 241 GLU 241 241 241 GLU GLU C . n C 3 242 ALA 242 242 242 ALA ALA C . n C 3 243 ASP 243 243 243 ASP ASP C . n C 3 244 VAL 244 244 244 VAL VAL C . n C 3 245 GLN 245 245 245 GLN GLN C . n C 3 246 VAL 246 246 246 VAL VAL C . n C 3 247 ALA 247 247 247 ALA ALA C . n C 3 248 ILE 248 248 248 ILE ILE C . n C 3 249 HIS 249 249 249 HIS HIS C . n C 3 250 SER 250 250 250 SER SER C . n C 3 251 ASP 251 251 251 ASP ASP C . n C 3 252 THR 252 252 252 THR THR C . n C 3 253 LEU 253 253 253 LEU LEU C . n C 3 254 ASN 254 254 254 ASN ASN C . n C 3 255 GLU 255 255 255 GLU GLU C . n C 3 256 ALA 256 256 256 ALA ALA C . n C 3 257 GLY 257 257 257 GLY GLY C . n C 3 258 PHE 258 258 258 PHE PHE C . n C 3 259 LEU 259 259 259 LEU LEU C . n C 3 260 GLU 260 260 260 GLU GLU C . n C 3 261 ASP 261 261 261 ASP ASP C . n C 3 262 THR 262 262 262 THR THR C . n C 3 263 LEU 263 263 263 LEU LEU C . n C 3 264 ARG 264 264 264 ARG ARG C . n C 3 265 ALA 265 265 265 ALA ALA C . n C 3 266 ILE 266 266 266 ILE ILE C . n C 3 267 ASN 267 267 267 ASN ASN C . n C 3 268 GLY 268 268 268 GLY GLY C . n C 3 269 ARG 269 269 269 ARG ARG C . n C 3 270 VAL 270 270 270 VAL VAL C . n C 3 271 ILE 271 271 271 ILE ILE C . n C 3 272 HIS 272 272 272 HIS HIS C . n C 3 273 SER 273 273 273 SER SER C . n C 3 274 PHE 274 274 274 PHE PHE C . n C 3 275 HIS 275 275 275 HIS HIS C . n C 3 276 VAL 276 276 276 VAL VAL C . n C 3 277 GLU 277 277 277 GLU GLU C . n C 3 278 GLY 278 278 278 GLY GLY C . n C 3 279 ALA 279 279 279 ALA ALA C . n C 3 280 GLY 280 280 280 GLY GLY C . n C 3 281 GLY 281 281 281 GLY GLY C . n C 3 282 GLY 282 282 282 GLY GLY C . n C 3 283 HIS 283 283 283 HIS HIS C . n C 3 284 ALA 284 284 284 ALA ALA C . n C 3 285 PRO 285 285 285 PRO PRO C . n C 3 286 ASP 286 286 286 ASP ASP C . n C 3 287 ILE 287 287 287 ILE ILE C . n C 3 288 MET 288 288 288 MET MET C . n C 3 289 ALA 289 289 289 ALA ALA C . n C 3 290 MET 290 290 290 MET MET C . n C 3 291 ALA 291 291 291 ALA ALA C . n C 3 292 GLY 292 292 292 GLY GLY C . n C 3 293 HIS 293 293 293 HIS HIS C . n C 3 294 PRO 294 294 294 PRO PRO C . n C 3 295 ASN 295 295 295 ASN ASN C . n C 3 296 VAL 296 296 296 VAL VAL C . n C 3 297 LEU 297 297 297 LEU LEU C . n C 3 298 PRO 298 298 298 PRO PRO C . n C 3 299 SER 299 299 299 SER SER C . n C 3 300 SER 300 300 300 SER SER C . n C 3 301 THR 301 301 301 THR THR C . n C 3 302 ASN 302 302 302 ASN ASN C . n C 3 303 PRO 303 303 303 PRO PRO C . n C 3 304 THR 304 304 304 THR THR C . n C 3 305 ARG 305 305 305 ARG ARG C . n C 3 306 PRO 306 306 306 PRO PRO C . n C 3 307 PHE 307 307 307 PHE PHE C . n C 3 308 THR 308 308 308 THR THR C . n C 3 309 VAL 309 309 309 VAL VAL C . n C 3 310 ASN 310 310 310 ASN ASN C . n C 3 311 THR 311 311 311 THR THR C . n C 3 312 ILE 312 312 312 ILE ILE C . n C 3 313 ASP 313 313 313 ASP ASP C . n C 3 314 GLU 314 314 314 GLU GLU C . n C 3 315 HIS 315 315 315 HIS HIS C . n C 3 316 LEU 316 316 316 LEU LEU C . n C 3 317 ASP 317 317 317 ASP ASP C . n C 3 318 MET 318 318 318 MET MET C . n C 3 319 LEU 319 319 319 LEU LEU C . n C 3 320 MET 320 320 320 MET MET C . n C 3 321 VAL 321 321 321 VAL VAL C . n C 3 322 CYS 322 322 322 CYS CYS C . n C 3 323 HIS 323 323 323 HIS HIS C . n C 3 324 HIS 324 324 324 HIS HIS C . n C 3 325 LEU 325 325 325 LEU LEU C . n C 3 326 LYS 326 326 326 LYS LYS C . n C 3 327 GLN 327 327 327 GLN GLN C . n C 3 328 ASN 328 328 328 ASN ASN C . n C 3 329 ILE 329 329 329 ILE ILE C . n C 3 330 PRO 330 330 330 PRO PRO C . n C 3 331 GLU 331 331 331 GLU GLU C . n C 3 332 ASP 332 332 332 ASP ASP C . n C 3 333 VAL 333 333 333 VAL VAL C . n C 3 334 ALA 334 334 334 ALA ALA C . n C 3 335 PHE 335 335 335 PHE PHE C . n C 3 336 ALA 336 336 336 ALA ALA C . n C 3 337 ASP 337 337 337 ASP ASP C . n C 3 338 SER 338 338 338 SER SER C . n C 3 339 ARG 339 339 339 ARG ARG C . n C 3 340 ILE 340 340 340 ILE ILE C . n C 3 341 ARG 341 341 341 ARG ARG C . n C 3 342 PRO 342 342 342 PRO PRO C . n C 3 343 GLU 343 343 343 GLU GLU C . n C 3 344 THR 344 344 344 THR THR C . n C 3 345 ILE 345 345 345 ILE ILE C . n C 3 346 ALA 346 346 346 ALA ALA C . n C 3 347 ALA 347 347 347 ALA ALA C . n C 3 348 GLU 348 348 348 GLU GLU C . n C 3 349 ASP 349 349 349 ASP ASP C . n C 3 350 ILE 350 350 350 ILE ILE C . n C 3 351 LEU 351 351 351 LEU LEU C . n C 3 352 HIS 352 352 352 HIS HIS C . n C 3 353 ASP 353 353 353 ASP ASP C . n C 3 354 LEU 354 354 354 LEU LEU C . n C 3 355 GLY 355 355 355 GLY GLY C . n C 3 356 ILE 356 356 356 ILE ILE C . n C 3 357 ILE 357 357 357 ILE ILE C . n C 3 358 SER 358 358 358 SER SER C . n C 3 359 MET 359 359 359 MET MET C . n C 3 360 MET 360 360 360 MET MET C . n C 3 361 SER 361 361 361 SER SER C . n C 3 362 THR 362 362 362 THR THR C . n C 3 363 ASP 363 363 363 ASP ASP C . n C 3 364 ALA 364 364 364 ALA ALA C . n C 3 365 LEU 365 365 365 LEU LEU C . n C 3 366 ALA 366 366 366 ALA ALA C . n C 3 367 MET 367 367 367 MET MET C . n C 3 368 GLY 368 368 368 GLY GLY C . n C 3 369 ARG 369 369 369 ARG ARG C . n C 3 370 ALA 370 370 370 ALA ALA C . n C 3 371 GLY 371 371 371 GLY GLY C . n C 3 372 GLU 372 372 372 GLU GLU C . n C 3 373 MET 373 373 373 MET MET C . n C 3 374 VAL 374 374 374 VAL VAL C . n C 3 375 LEU 375 375 375 LEU LEU C . n C 3 376 ARG 376 376 376 ARG ARG C . n C 3 377 THR 377 377 377 THR THR C . n C 3 378 TRP 378 378 378 TRP TRP C . n C 3 379 GLN 379 379 379 GLN GLN C . n C 3 380 THR 380 380 380 THR THR C . n C 3 381 ALA 381 381 381 ALA ALA C . n C 3 382 ASP 382 382 382 ASP ASP C . n C 3 383 LYS 383 383 383 LYS LYS C . n C 3 384 MET 384 384 384 MET MET C . n C 3 385 LYS 385 385 385 LYS LYS C . n C 3 386 LYS 386 386 386 LYS LYS C . n C 3 387 GLN 387 387 387 GLN GLN C . n C 3 388 ARG 388 388 388 ARG ARG C . n C 3 389 GLY 389 389 389 GLY GLY C . n C 3 390 PRO 390 390 390 PRO PRO C . n C 3 391 LEU 391 391 391 LEU LEU C . n C 3 392 ALA 392 392 392 ALA ALA C . n C 3 393 GLU 393 393 393 GLU GLU C . n C 3 394 GLU 394 394 394 GLU GLU C . n C 3 395 LYS 395 395 395 LYS LYS C . n C 3 396 ASN 396 396 396 ASN ASN C . n C 3 397 GLY 397 397 397 GLY GLY C . n C 3 398 SER 398 398 398 SER SER C . n C 3 399 ASP 399 399 399 ASP ASP C . n C 3 400 ASN 400 400 400 ASN ASN C . n C 3 401 PHE 401 401 401 PHE PHE C . n C 3 402 ARG 402 402 402 ARG ARG C . n C 3 403 ALA 403 403 403 ALA ALA C . n C 3 404 LYS 404 404 404 LYS LYS C . n C 3 405 ARG 405 405 405 ARG ARG C . n C 3 406 TYR 406 406 406 TYR TYR C . n C 3 407 VAL 407 407 407 VAL VAL C . n C 3 408 SER 408 408 408 SER SER C . n C 3 409 LYS 409 409 409 LYS LYS C . n C 3 410 TYR 410 410 410 TYR TYR C . n C 3 411 THR 411 411 411 THR THR C . n C 3 412 ILE 412 412 412 ILE ILE C . n C 3 413 ASN 413 413 413 ASN ASN C . n C 3 414 PRO 414 414 414 PRO PRO C . n C 3 415 ALA 415 415 415 ALA ALA C . n C 3 416 ILE 416 416 416 ILE ILE C . n C 3 417 ALA 417 417 417 ALA ALA C . n C 3 418 GLN 418 418 418 GLN GLN C . n C 3 419 GLY 419 419 419 GLY GLY C . n C 3 420 ILE 420 420 420 ILE ILE C . n C 3 421 ALA 421 421 421 ALA ALA C . n C 3 422 HIS 422 422 422 HIS HIS C . n C 3 423 GLU 423 423 423 GLU GLU C . n C 3 424 VAL 424 424 424 VAL VAL C . n C 3 425 GLY 425 425 425 GLY GLY C . n C 3 426 SER 426 426 426 SER SER C . n C 3 427 ILE 427 427 427 ILE ILE C . n C 3 428 GLU 428 428 428 GLU GLU C . n C 3 429 GLU 429 429 429 GLU GLU C . n C 3 430 GLY 430 430 430 GLY GLY C . n C 3 431 LYS 431 431 431 LYS LYS C . n C 3 432 PHE 432 432 432 PHE PHE C . n C 3 433 ALA 433 433 433 ALA ALA C . n C 3 434 ASP 434 434 434 ASP ASP C . n C 3 435 LEU 435 435 435 LEU LEU C . n C 3 436 VAL 436 436 436 VAL VAL C . n C 3 437 LEU 437 437 437 LEU LEU C . n C 3 438 TRP 438 438 438 TRP TRP C . n C 3 439 GLU 439 439 439 GLU GLU C . n C 3 440 PRO 440 440 440 PRO PRO C . n C 3 441 LYS 441 441 441 LYS LYS C . n C 3 442 PHE 442 442 442 PHE PHE C . n C 3 443 PHE 443 443 443 PHE PHE C . n C 3 444 GLY 444 444 444 GLY GLY C . n C 3 445 VAL 445 445 445 VAL VAL C . n C 3 446 LYS 446 446 446 LYS LYS C . n C 3 447 ALA 447 447 447 ALA ALA C . n C 3 448 ASP 448 448 448 ASP ASP C . n C 3 449 ARG 449 449 449 ARG ARG C . n C 3 450 VAL 450 450 450 VAL VAL C . n C 3 451 ILE 451 451 451 ILE ILE C . n C 3 452 LYS 452 452 452 LYS LYS C . n C 3 453 GLY 453 453 453 GLY GLY C . n C 3 454 GLY 454 454 454 GLY GLY C . n C 3 455 ILE 455 455 455 ILE ILE C . n C 3 456 ILE 456 456 456 ILE ILE C . n C 3 457 ALA 457 457 457 ALA ALA C . n C 3 458 TYR 458 458 458 TYR TYR C . n C 3 459 ALA 459 459 459 ALA ALA C . n C 3 460 GLN 460 460 460 GLN GLN C . n C 3 461 ILE 461 461 461 ILE ILE C . n C 3 462 GLY 462 462 462 GLY GLY C . n C 3 463 ASP 463 463 463 ASP ASP C . n C 3 464 PRO 464 464 464 PRO PRO C . n C 3 465 SER 465 465 465 SER SER C . n C 3 466 ALA 466 466 466 ALA ALA C . n C 3 467 SER 467 467 467 SER SER C . n C 3 468 ILE 468 468 468 ILE ILE C . n C 3 469 PRO 469 469 469 PRO PRO C . n C 3 470 THR 470 470 470 THR THR C . n C 3 471 PRO 471 471 471 PRO PRO C . n C 3 472 GLN 472 472 472 GLN GLN C . n C 3 473 PRO 473 473 473 PRO PRO C . n C 3 474 VAL 474 474 474 VAL VAL C . n C 3 475 MET 475 475 475 MET MET C . n C 3 476 GLY 476 476 476 GLY GLY C . n C 3 477 ARG 477 477 477 ARG ARG C . n C 3 478 ARG 478 478 478 ARG ARG C . n C 3 479 MET 479 479 479 MET MET C . n C 3 480 TYR 480 480 480 TYR TYR C . n C 3 481 GLY 481 481 481 GLY GLY C . n C 3 482 THR 482 482 482 THR THR C . n C 3 483 VAL 483 483 483 VAL VAL C . n C 3 484 GLY 484 484 484 GLY GLY C . n C 3 485 ASP 485 485 485 ASP ASP C . n C 3 486 LEU 486 486 486 LEU LEU C . n C 3 487 ILE 487 487 487 ILE ILE C . n C 3 488 HIS 488 488 488 HIS HIS C . n C 3 489 ASP 489 489 489 ASP ASP C . n C 3 490 THR 490 490 490 THR THR C . n C 3 491 ASN 491 491 491 ASN ASN C . n C 3 492 ILE 492 492 492 ILE ILE C . n C 3 493 THR 493 493 493 THR THR C . n C 3 494 PHE 494 494 494 PHE PHE C . n C 3 495 MET 495 495 495 MET MET C . n C 3 496 SER 496 496 496 SER SER C . n C 3 497 LYS 497 497 497 LYS LYS C . n C 3 498 SER 498 498 498 SER SER C . n C 3 499 SER 499 499 499 SER SER C . n C 3 500 ILE 500 500 500 ILE ILE C . n C 3 501 GLN 501 501 501 GLN GLN C . n C 3 502 GLN 502 502 502 GLN GLN C . n C 3 503 GLY 503 503 503 GLY GLY C . n C 3 504 VAL 504 504 504 VAL VAL C . n C 3 505 PRO 505 505 505 PRO PRO C . n C 3 506 ALA 506 506 506 ALA ALA C . n C 3 507 LYS 507 507 507 LYS LYS C . n C 3 508 LEU 508 508 508 LEU LEU C . n C 3 509 GLY 509 509 509 GLY GLY C . n C 3 510 LEU 510 510 510 LEU LEU C . n C 3 511 LYS 511 511 511 LYS LYS C . n C 3 512 ARG 512 512 512 ARG ARG C . n C 3 513 ARG 513 513 513 ARG ARG C . n C 3 514 ILE 514 514 514 ILE ILE C . n C 3 515 GLY 515 515 515 GLY GLY C . n C 3 516 THR 516 516 516 THR THR C . n C 3 517 VAL 517 517 517 VAL VAL C . n C 3 518 LYS 518 518 518 LYS LYS C . n C 3 519 ASN 519 519 519 ASN ASN C . n C 3 520 CYS 520 520 520 CYS CYS C . n C 3 521 ARG 521 521 521 ARG ARG C . n C 3 522 ASN 522 522 522 ASN ASN C . n C 3 523 ILE 523 523 523 ILE ILE C . n C 3 524 GLY 524 524 524 GLY GLY C . n C 3 525 LYS 525 525 525 LYS LYS C . n C 3 526 LYS 526 526 526 LYS LYS C . n C 3 527 ASP 527 527 527 ASP ASP C . n C 3 528 MET 528 528 528 MET MET C . n C 3 529 LYS 529 529 529 LYS LYS C . n C 3 530 TRP 530 530 530 TRP TRP C . n C 3 531 ASN 531 531 531 ASN ASN C . n C 3 532 ASP 532 532 532 ASP ASP C . n C 3 533 VAL 533 533 533 VAL VAL C . n C 3 534 THR 534 534 534 THR THR C . n C 3 535 THR 535 535 535 THR THR C . n C 3 536 ASP 536 536 536 ASP ASP C . n C 3 537 ILE 537 537 537 ILE ILE C . n C 3 538 ASP 538 538 538 ASP ASP C . n C 3 539 ILE 539 539 539 ILE ILE C . n C 3 540 ASN 540 540 540 ASN ASN C . n C 3 541 PRO 541 541 541 PRO PRO C . n C 3 542 GLU 542 542 542 GLU GLU C . n C 3 543 THR 543 543 543 THR THR C . n C 3 544 TYR 544 544 544 TYR TYR C . n C 3 545 GLU 545 545 545 GLU GLU C . n C 3 546 VAL 546 546 546 VAL VAL C . n C 3 547 LYS 547 547 547 LYS LYS C . n C 3 548 VAL 548 548 548 VAL VAL C . n C 3 549 ASP 549 549 549 ASP ASP C . n C 3 550 GLY 550 550 550 GLY GLY C . n C 3 551 GLU 551 551 551 GLU GLU C . n C 3 552 VAL 552 552 552 VAL VAL C . n C 3 553 LEU 553 553 553 LEU LEU C . n C 3 554 THR 554 554 554 THR THR C . n C 3 555 CYS 555 555 555 CYS CYS C . n C 3 556 GLU 556 556 556 GLU GLU C . n C 3 557 PRO 557 557 557 PRO PRO C . n C 3 558 VAL 558 558 558 VAL VAL C . n C 3 559 LYS 559 559 559 LYS LYS C . n C 3 560 GLU 560 560 560 GLU GLU C . n C 3 561 LEU 561 561 561 LEU LEU C . n C 3 562 PRO 562 562 562 PRO PRO C . n C 3 563 MET 563 563 563 MET MET C . n C 3 564 ALA 564 564 564 ALA ALA C . n C 3 565 GLN 565 565 565 GLN GLN C . n C 3 566 ARG 566 566 566 ARG ARG C . n C 3 567 TYR 567 567 567 TYR TYR C . n C 3 568 PHE 568 568 568 PHE PHE C . n C 3 569 LEU 569 569 569 LEU LEU C . n C 3 570 PHE 570 570 570 PHE PHE C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI 1 601 600 NI NI C . E 4 NI 1 602 601 NI NI C . F 5 OH 1 603 1573 OH OH C . G 6 HOH 1 701 2153 HOH HOH C . G 6 HOH 2 702 2176 HOH HOH C . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9GML _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9GML _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9GML _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9GML _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 6152 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.655 ? 8328 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.242 ? 853 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.048 ? 941 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 1100 ? f_plane_restr ? ? # _struct.entry_id 9GML _struct.title 'Cryo-EM structure of Sporosarcina pasteurii urease' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9GML _struct_keywords.text 'Urease, enzyme, Nickel, urea, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP URE3_SPOPA P41022 ? 1 ;MHLNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDVMEGVPEMIDDI QAEATFPDGTKLVTVHNPIS ; 1 2 UNP URE2_SPOPA P41021 ? 2 ;MSNNNYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPG EEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE ; 1 3 UNP URE1_SPOPA P41020 ? 3 ;MKINRQQYAESYGPTVGDQVRLADTDLWIEVEKDTTYGDEAVNFGGGKVLREGMGENGTYTRTENVLDLLLTNALILDYT GIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGG GTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLKIHEDWGATPASIDRSLTVAD EADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLM VCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDN FRAKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVMGRRMY GTVGDLIHDTNITFMSKSSIQQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKE LPMAQRYFLF ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9GML A 1 ? 100 ? P41022 1 ? 100 ? 1 100 2 2 9GML B 1 ? 126 ? P41021 1 ? 126 ? 1 126 3 3 9GML C 1 ? 570 ? P41020 1 ? 570 ? 1 570 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9GML ALA A 20 ? UNP P41022 LEU 20 variant 20 1 1 9GML LYS A 22 ? UNP P41022 ARG 22 variant 22 2 3 9GML TYR C 35 ? UNP P41020 ? ? insertion 35 3 3 9GML ? C ? ? UNP P41020 VAL 42 deletion ? 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 4 ? GLY A 27 ? ASN A 4 GLY A 27 1 ? 24 HELX_P HELX_P2 AA2 ASN A 31 ? GLY A 50 ? ASN A 31 GLY A 50 1 ? 20 HELX_P HELX_P3 AA3 THR A 52 ? GLY A 60 ? THR A 52 GLY A 60 1 ? 9 HELX_P HELX_P4 AA4 LYS A 61 ? VAL A 63 ? LYS A 61 VAL A 63 5 ? 3 HELX_P HELX_P5 AA5 GLY A 72 ? MET A 76 ? GLY A 72 MET A 76 5 ? 5 HELX_P HELX_P6 AA6 ASN B 109 ? LEU B 120 ? ASN B 109 LEU B 120 1 ? 12 HELX_P HELX_P7 AA7 ARG C 5 ? TYR C 12 ? ARG C 5 TYR C 12 1 ? 8 HELX_P HELX_P8 AA8 ASP C 144 ? ALA C 151 ? ASP C 144 ALA C 151 1 ? 8 HELX_P HELX_P9 AA9 ALA C 165 ? THR C 171 ? ALA C 165 THR C 171 1 ? 7 HELX_P HELX_P10 AB1 PRO C 175 ? THR C 187 ? PRO C 175 THR C 187 1 ? 13 HELX_P HELX_P11 AB2 GLU C 188 ? LEU C 190 ? GLU C 188 LEU C 190 5 ? 3 HELX_P HELX_P12 AB3 SER C 204 ? ASP C 213 ? SER C 204 ASP C 213 1 ? 10 HELX_P HELX_P13 AB4 HIS C 222 ? GLY C 226 ? HIS C 222 GLY C 226 5 ? 5 HELX_P HELX_P14 AB5 THR C 228 ? ASP C 243 ? THR C 228 ASP C 243 1 ? 16 HELX_P HELX_P15 AB6 PHE C 258 ? ASN C 267 ? PHE C 258 ASN C 267 1 ? 10 HELX_P HELX_P16 AB7 PRO C 285 ? HIS C 293 ? PRO C 285 HIS C 293 5 ? 9 HELX_P HELX_P17 AB8 ASN C 310 ? HIS C 323 ? ASN C 310 HIS C 323 1 ? 14 HELX_P HELX_P18 AB9 ILE C 329 ? ILE C 340 ? ILE C 329 ILE C 340 1 ? 12 HELX_P HELX_P19 AC1 ARG C 341 ? LEU C 354 ? ARG C 341 LEU C 354 1 ? 14 HELX_P HELX_P20 AC2 ARG C 369 ? GLY C 371 ? ARG C 369 GLY C 371 5 ? 3 HELX_P HELX_P21 AC3 GLU C 372 ? GLY C 389 ? GLU C 372 GLY C 389 1 ? 18 HELX_P HELX_P22 AC4 ASP C 399 ? SER C 408 ? ASP C 399 SER C 408 1 ? 10 HELX_P HELX_P23 AC5 ILE C 412 ? GLY C 419 ? ILE C 412 GLY C 419 1 ? 8 HELX_P HELX_P24 AC6 GLU C 439 ? PHE C 443 ? GLU C 439 PHE C 443 5 ? 5 HELX_P HELX_P25 AC7 TYR C 480 ? VAL C 483 ? TYR C 480 VAL C 483 5 ? 4 HELX_P HELX_P26 AC8 ASP C 485 ? ASP C 489 ? ASP C 485 ASP C 489 5 ? 5 HELX_P HELX_P27 AC9 LYS C 497 ? GLN C 502 ? LYS C 497 GLN C 502 1 ? 6 HELX_P HELX_P28 AD1 GLY C 503 ? GLY C 509 ? GLY C 503 GLY C 509 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A CXM 1 C ? ? ? 1_555 A HIS 2 N ? ? A CXM 1 A HIS 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? C LEU 219 C ? ? ? 1_555 C KCX 220 N ? ? C LEU 219 C KCX 220 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? C KCX 220 C ? ? ? 1_555 C ILE 221 N ? ? C KCX 220 C ILE 221 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? C HIS 137 NE2 ? ? ? 1_555 E NI . NI ? ? C HIS 137 C NI 602 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc2 metalc ? ? C HIS 139 NE2 ? ? ? 1_555 E NI . NI ? ? C HIS 139 C NI 602 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc3 metalc ? ? C KCX 220 OQ1 ? ? ? 1_555 D NI . NI ? ? C KCX 220 C NI 601 1_555 ? ? ? ? ? ? ? 1.976 ? ? metalc4 metalc ? ? C KCX 220 OQ2 ? ? ? 1_555 E NI . NI ? ? C KCX 220 C NI 602 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc5 metalc ? ? C HIS 249 ND1 ? ? ? 1_555 D NI . NI ? ? C HIS 249 C NI 601 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc6 metalc ? ? C HIS 275 NE2 ? ? ? 1_555 D NI . NI ? ? C HIS 275 C NI 601 1_555 ? ? ? ? ? ? ? 1.963 ? ? metalc7 metalc ? ? C ASP 363 OD1 ? ? ? 1_555 E NI . NI ? ? C ASP 363 C NI 602 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc8 metalc ? ? D NI . NI ? ? ? 1_555 F OH . O ? ? C NI 601 C OH 603 1_555 ? ? ? ? ? ? ? 1.975 ? ? metalc9 metalc ? ? D NI . NI ? ? ? 1_555 G HOH . O ? ? C NI 601 C HOH 702 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc10 metalc ? ? E NI . NI ? ? ? 1_555 F OH . O ? ? C NI 602 C OH 603 1_555 ? ? ? ? ? ? ? 1.969 ? ? metalc11 metalc ? ? E NI . NI ? ? ? 1_555 G HOH . O ? ? C NI 602 C HOH 701 1_555 ? ? ? ? ? ? ? 2.168 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? C HIS 137 ? C HIS 137 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 NE2 ? C HIS 139 ? C HIS 139 ? 1_555 113.6 ? 2 NE2 ? C HIS 137 ? C HIS 137 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 OQ2 ? C KCX 220 ? C KCX 220 ? 1_555 84.2 ? 3 NE2 ? C HIS 139 ? C HIS 139 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 OQ2 ? C KCX 220 ? C KCX 220 ? 1_555 96.3 ? 4 NE2 ? C HIS 137 ? C HIS 137 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 OD1 ? C ASP 363 ? C ASP 363 ? 1_555 82.7 ? 5 NE2 ? C HIS 139 ? C HIS 139 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 OD1 ? C ASP 363 ? C ASP 363 ? 1_555 83.9 ? 6 OQ2 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 OD1 ? C ASP 363 ? C ASP 363 ? 1_555 165.8 ? 7 NE2 ? C HIS 137 ? C HIS 137 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 93.3 ? 8 NE2 ? C HIS 139 ? C HIS 139 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 153.1 ? 9 OQ2 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 84.6 ? 10 OD1 ? C ASP 363 ? C ASP 363 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 101.6 ? 11 NE2 ? C HIS 137 ? C HIS 137 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? G HOH . ? C HOH 701 ? 1_555 158.3 ? 12 NE2 ? C HIS 139 ? C HIS 139 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? G HOH . ? C HOH 701 ? 1_555 88.1 ? 13 OQ2 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? G HOH . ? C HOH 701 ? 1_555 93.7 ? 14 OD1 ? C ASP 363 ? C ASP 363 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? G HOH . ? C HOH 701 ? 1_555 100.5 ? 15 O ? F OH . ? C OH 603 ? 1_555 NI ? E NI . ? C NI 602 ? 1_555 O ? G HOH . ? C HOH 701 ? 1_555 65.0 ? 16 OQ1 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 ND1 ? C HIS 249 ? C HIS 249 ? 1_555 101.7 ? 17 OQ1 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 NE2 ? C HIS 275 ? C HIS 275 ? 1_555 99.8 ? 18 ND1 ? C HIS 249 ? C HIS 249 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 NE2 ? C HIS 275 ? C HIS 275 ? 1_555 98.6 ? 19 OQ1 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 89.2 ? 20 ND1 ? C HIS 249 ? C HIS 249 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 160.0 ? 21 NE2 ? C HIS 275 ? C HIS 275 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? F OH . ? C OH 603 ? 1_555 95.8 ? 22 OQ1 ? C KCX 220 ? C KCX 220 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? G HOH . ? C HOH 702 ? 1_555 108.4 ? 23 ND1 ? C HIS 249 ? C HIS 249 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? G HOH . ? C HOH 702 ? 1_555 91.4 ? 24 NE2 ? C HIS 275 ? C HIS 275 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? G HOH . ? C HOH 702 ? 1_555 147.5 ? 25 O ? F OH . ? C OH 603 ? 1_555 NI ? D NI . ? C NI 601 ? 1_555 O ? G HOH . ? C HOH 702 ? 1_555 69.2 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CXM A 1 ? . . . . CXM A 1 ? 1_555 . . . . . . . MET 1 CXM Carboxylation 'Named protein modification' 2 KCX C 220 ? . . . . KCX C 220 ? 1_555 . . . . . . . LYS 1 KCX Carboxylation 'Named protein modification' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 284 C . ? ALA 284 C PRO 285 C ? PRO 285 C 1 -2.31 2 ARG 305 C . ? ARG 305 C PRO 306 C ? PRO 306 C 1 -3.84 3 GLN 472 C . ? GLN 472 C PRO 473 C ? PRO 473 C 1 1.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 4 ? AA8 ? 8 ? AA9 ? 7 ? AB1 ? 2 ? AB2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? parallel AA7 2 3 ? anti-parallel AA7 3 4 ? parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel AA8 6 7 ? anti-parallel AA8 7 8 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AA9 5 6 ? parallel AA9 6 7 ? parallel AB1 1 2 ? parallel AB2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 79 ? PHE A 86 ? ASP A 79 PHE A 86 AA1 2 GLY A 89 ? HIS A 96 ? GLY A 89 HIS A 96 AA2 1 GLU B 18 ? GLU B 20 ? GLU B 18 GLU B 20 AA2 2 LYS C 2 ? ASN C 4 ? LYS C 2 ASN C 4 AA3 1 LEU B 55 ? LEU B 56 ? LEU B 55 LEU B 56 AA3 2 LYS B 27 ? ASN B 34 ? LYS B 27 ASN B 34 AA3 3 GLU B 82 ? GLU B 89 ? GLU B 82 GLU B 89 AA3 4 ARG B 65 ? LEU B 67 ? ARG B 65 LEU B 67 AA4 1 ILE B 40 ? VAL B 42 ? ILE B 40 VAL B 42 AA4 2 ALA B 75 ? PHE B 77 ? ALA B 75 PHE B 77 AA5 1 GLU B 95 ? VAL B 96 ? GLU B 95 VAL B 96 AA5 2 GLY B 105 ? SER B 106 ? GLY B 105 SER B 106 AA6 1 GLN C 19 ? ARG C 21 ? GLN C 19 ARG C 21 AA6 2 TRP C 28 ? GLU C 30 ? TRP C 28 GLU C 30 AA7 1 LYS C 33 ? ASP C 34 ? LYS C 33 ASP C 34 AA7 2 GLY C 81 ? LYS C 90 ? GLY C 81 LYS C 90 AA7 3 LEU C 69 ? ASP C 78 ? LEU C 69 ASP C 78 AA7 4 GLU C 120 ? ALA C 123 ? GLU C 120 ALA C 123 AA8 1 TYR C 93 ? GLY C 98 ? TYR C 93 GLY C 98 AA8 2 GLY C 81 ? LYS C 90 ? GLY C 81 LYS C 90 AA8 3 LEU C 69 ? ASP C 78 ? LEU C 69 ASP C 78 AA8 4 ILE C 128 ? ALA C 131 ? ILE C 128 ALA C 131 AA8 5 ASP C 434 ? TRP C 438 ? ASP C 434 TRP C 438 AA8 6 ARG C 449 ? LYS C 452 ? ARG C 449 LYS C 452 AA8 7 ILE C 455 ? ILE C 461 ? ILE C 455 ILE C 461 AA8 8 MET C 475 ? ARG C 478 ? MET C 475 ARG C 478 AA9 1 GLY C 133 ? HIS C 139 ? GLY C 133 HIS C 139 AA9 2 ILE C 154 ? GLY C 160 ? ILE C 154 GLY C 160 AA9 3 ASN C 193 ? LYS C 199 ? ASN C 193 LYS C 199 AA9 4 GLY C 218 ? ILE C 221 ? GLY C 218 ILE C 221 AA9 5 GLN C 245 ? ILE C 248 ? GLN C 245 ILE C 248 AA9 6 ILE C 271 ? SER C 273 ? ILE C 271 SER C 273 AA9 7 VAL C 296 ? LEU C 297 ? VAL C 296 LEU C 297 AB1 1 ILE C 492 ? SER C 496 ? ILE C 492 SER C 496 AB1 2 ARG C 513 ? VAL C 517 ? ARG C 513 VAL C 517 AB2 1 ASP C 538 ? ILE C 539 ? ASP C 538 ILE C 539 AB2 2 VAL C 546 ? LYS C 547 ? VAL C 546 LYS C 547 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 84 ? N ALA A 84 O LYS A 91 ? O LYS A 91 AA2 1 2 N ILE B 19 ? N ILE B 19 O ILE C 3 ? O ILE C 3 AA3 1 2 O LEU B 56 ? O LEU B 56 N SER B 33 ? N SER B 33 AA3 2 3 N VAL B 32 ? N VAL B 32 O MET B 83 ? O MET B 83 AA3 3 4 O THR B 88 ? O THR B 88 N ARG B 66 ? N ARG B 66 AA4 1 2 N VAL B 42 ? N VAL B 42 O ALA B 75 ? O ALA B 75 AA5 1 2 N VAL B 96 ? N VAL B 96 O GLY B 105 ? O GLY B 105 AA6 1 2 N VAL C 20 ? N VAL C 20 O ILE C 29 ? O ILE C 29 AA7 1 2 N LYS C 33 ? N LYS C 33 O LYS C 84 ? O LYS C 84 AA7 2 3 O GLY C 81 ? O GLY C 81 N ASP C 78 ? N ASP C 78 AA7 3 4 N LEU C 70 ? N LEU C 70 O ILE C 122 ? O ILE C 122 AA8 1 2 O GLY C 98 ? O GLY C 98 N ASP C 86 ? N ASP C 86 AA8 2 3 O GLY C 81 ? O GLY C 81 N ASP C 78 ? N ASP C 78 AA8 3 4 N LEU C 75 ? N LEU C 75 O VAL C 129 ? O VAL C 129 AA8 4 5 N ILE C 128 ? N ILE C 128 O TRP C 438 ? O TRP C 438 AA8 5 6 N LEU C 437 ? N LEU C 437 O ARG C 449 ? O ARG C 449 AA8 6 7 N VAL C 450 ? N VAL C 450 O TYR C 458 ? O TYR C 458 AA8 7 8 N ALA C 459 ? N ALA C 459 O ARG C 477 ? O ARG C 477 AA9 1 2 N ASP C 135 ? N ASP C 135 O THR C 156 ? O THR C 156 AA9 2 3 N LEU C 157 ? N LEU C 157 O ASN C 193 ? O ASN C 193 AA9 3 4 N GLY C 198 ? N GLY C 198 O GLY C 218 ? O GLY C 218 AA9 4 5 N LEU C 219 ? N LEU C 219 O ALA C 247 ? O ALA C 247 AA9 5 6 N VAL C 246 ? N VAL C 246 O HIS C 272 ? O HIS C 272 AA9 6 7 N SER C 273 ? N SER C 273 O LEU C 297 ? O LEU C 297 AB1 1 2 N THR C 493 ? N THR C 493 O GLY C 515 ? O GLY C 515 AB2 1 2 N ASP C 538 ? N ASP C 538 O LYS C 547 ? O LYS C 547 # _pdbx_entry_details.entry_id 9GML _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 71 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 566 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 2 ? ? 56.61 89.29 2 1 PRO A 87 ? ? -54.32 -8.68 3 1 ASN A 97 ? ? 28.13 64.60 4 1 ILE B 99 ? ? 53.02 -111.35 5 1 ALA C 23 ? ? 55.07 -152.81 6 1 ASP C 26 ? ? -114.65 55.24 7 1 MET C 54 ? ? -126.08 -159.90 8 1 ALA C 118 ? ? -98.91 36.70 9 1 ALA C 124 ? ? -99.84 31.63 10 1 PRO C 164 ? ? -78.56 48.77 11 1 ALA C 227 ? ? -93.07 54.36 12 1 ASP C 286 ? ? -97.31 30.91 13 1 MET C 367 ? ? 62.51 60.88 14 1 GLU C 372 ? ? -140.23 46.15 15 1 TRP C 530 ? ? 67.03 -4.27 16 1 ALA C 564 ? ? -147.21 -157.68 17 1 GLN C 565 ? ? -47.45 -19.46 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CXM 1 A CXM 1 ? MET 'modified residue' 2 C KCX 220 C KCX 220 ? LYS 'modified residue' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9GML _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_reconstruction.entry_id 9GML _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.12 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 90461 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '50 mM HEPES buffer, at pH 7.5' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'native Sporosarcina pasteurii urease' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2,3 # _em_imaging.entry_id 9GML _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9GML _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 283 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9GML _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9GML _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 1 ? B MET 1 2 1 Y 1 B SER 2 ? B SER 2 3 1 Y 1 B ASN 3 ? B ASN 3 4 1 Y 1 B ASN 4 ? B ASN 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CXM N N N N 74 CXM CA C N S 75 CXM CB C N N 76 CXM CG C N N 77 CXM SD S N N 78 CXM CE C N N 79 CXM C C N N 80 CXM O O N N 81 CXM CN C N N 82 CXM ON1 O N N 83 CXM ON2 O N N 84 CXM OXT O N N 85 CXM H H N N 86 CXM HA H N N 87 CXM HB2 H N N 88 CXM HB3 H N N 89 CXM HG2 H N N 90 CXM HG3 H N N 91 CXM HE1 H N N 92 CXM HE2 H N N 93 CXM HE3 H N N 94 CXM HO2 H N N 95 CXM HXT H N N 96 CYS N N N N 97 CYS CA C N R 98 CYS C C N N 99 CYS O O N N 100 CYS CB C N N 101 CYS SG S N N 102 CYS OXT O N N 103 CYS H H N N 104 CYS H2 H N N 105 CYS HA H N N 106 CYS HB2 H N N 107 CYS HB3 H N N 108 CYS HG H N N 109 CYS HXT H N N 110 GLN N N N N 111 GLN CA C N S 112 GLN C C N N 113 GLN O O N N 114 GLN CB C N N 115 GLN CG C N N 116 GLN CD C N N 117 GLN OE1 O N N 118 GLN NE2 N N N 119 GLN OXT O N N 120 GLN H H N N 121 GLN H2 H N N 122 GLN HA H N N 123 GLN HB2 H N N 124 GLN HB3 H N N 125 GLN HG2 H N N 126 GLN HG3 H N N 127 GLN HE21 H N N 128 GLN HE22 H N N 129 GLN HXT H N N 130 GLU N N N N 131 GLU CA C N S 132 GLU C C N N 133 GLU O O N N 134 GLU CB C N N 135 GLU CG C N N 136 GLU CD C N N 137 GLU OE1 O N N 138 GLU OE2 O N N 139 GLU OXT O N N 140 GLU H H N N 141 GLU H2 H N N 142 GLU HA H N N 143 GLU HB2 H N N 144 GLU HB3 H N N 145 GLU HG2 H N N 146 GLU HG3 H N N 147 GLU HE2 H N N 148 GLU HXT H N N 149 GLY N N N N 150 GLY CA C N N 151 GLY C C N N 152 GLY O O N N 153 GLY OXT O N N 154 GLY H H N N 155 GLY H2 H N N 156 GLY HA2 H N N 157 GLY HA3 H N N 158 GLY HXT H N N 159 HIS N N N N 160 HIS CA C N S 161 HIS C C N N 162 HIS O O N N 163 HIS CB C N N 164 HIS CG C Y N 165 HIS ND1 N Y N 166 HIS CD2 C Y N 167 HIS CE1 C Y N 168 HIS NE2 N Y N 169 HIS OXT O N N 170 HIS H H N N 171 HIS H2 H N N 172 HIS HA H N N 173 HIS HB2 H N N 174 HIS HB3 H N N 175 HIS HD1 H N N 176 HIS HD2 H N N 177 HIS HE1 H N N 178 HIS HE2 H N N 179 HIS HXT H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 ILE N N N N 184 ILE CA C N S 185 ILE C C N N 186 ILE O O N N 187 ILE CB C N S 188 ILE CG1 C N N 189 ILE CG2 C N N 190 ILE CD1 C N N 191 ILE OXT O N N 192 ILE H H N N 193 ILE H2 H N N 194 ILE HA H N N 195 ILE HB H N N 196 ILE HG12 H N N 197 ILE HG13 H N N 198 ILE HG21 H N N 199 ILE HG22 H N N 200 ILE HG23 H N N 201 ILE HD11 H N N 202 ILE HD12 H N N 203 ILE HD13 H N N 204 ILE HXT H N N 205 KCX N N N N 206 KCX CA C N S 207 KCX CB C N N 208 KCX CG C N N 209 KCX CD C N N 210 KCX CE C N N 211 KCX NZ N N N 212 KCX C C N N 213 KCX O O N N 214 KCX CX C N N 215 KCX OXT O N N 216 KCX OQ1 O N N 217 KCX OQ2 O N N 218 KCX H H N N 219 KCX H2 H N N 220 KCX HA H N N 221 KCX HB2 H N N 222 KCX HB3 H N N 223 KCX HG2 H N N 224 KCX HG3 H N N 225 KCX HD2 H N N 226 KCX HD3 H N N 227 KCX HE2 H N N 228 KCX HE3 H N N 229 KCX HZ H N N 230 KCX HXT H N N 231 KCX HQ2 H N N 232 LEU N N N N 233 LEU CA C N S 234 LEU C C N N 235 LEU O O N N 236 LEU CB C N N 237 LEU CG C N N 238 LEU CD1 C N N 239 LEU CD2 C N N 240 LEU OXT O N N 241 LEU H H N N 242 LEU H2 H N N 243 LEU HA H N N 244 LEU HB2 H N N 245 LEU HB3 H N N 246 LEU HG H N N 247 LEU HD11 H N N 248 LEU HD12 H N N 249 LEU HD13 H N N 250 LEU HD21 H N N 251 LEU HD22 H N N 252 LEU HD23 H N N 253 LEU HXT H N N 254 LYS N N N N 255 LYS CA C N S 256 LYS C C N N 257 LYS O O N N 258 LYS CB C N N 259 LYS CG C N N 260 LYS CD C N N 261 LYS CE C N N 262 LYS NZ N N N 263 LYS OXT O N N 264 LYS H H N N 265 LYS H2 H N N 266 LYS HA H N N 267 LYS HB2 H N N 268 LYS HB3 H N N 269 LYS HG2 H N N 270 LYS HG3 H N N 271 LYS HD2 H N N 272 LYS HD3 H N N 273 LYS HE2 H N N 274 LYS HE3 H N N 275 LYS HZ1 H N N 276 LYS HZ2 H N N 277 LYS HZ3 H N N 278 LYS HXT H N N 279 MET N N N N 280 MET CA C N S 281 MET C C N N 282 MET O O N N 283 MET CB C N N 284 MET CG C N N 285 MET SD S N N 286 MET CE C N N 287 MET OXT O N N 288 MET H H N N 289 MET H2 H N N 290 MET HA H N N 291 MET HB2 H N N 292 MET HB3 H N N 293 MET HG2 H N N 294 MET HG3 H N N 295 MET HE1 H N N 296 MET HE2 H N N 297 MET HE3 H N N 298 MET HXT H N N 299 NI NI NI N N 300 OH O O N N 301 OH HO H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TRP N N N N 374 TRP CA C N S 375 TRP C C N N 376 TRP O O N N 377 TRP CB C N N 378 TRP CG C Y N 379 TRP CD1 C Y N 380 TRP CD2 C Y N 381 TRP NE1 N Y N 382 TRP CE2 C Y N 383 TRP CE3 C Y N 384 TRP CZ2 C Y N 385 TRP CZ3 C Y N 386 TRP CH2 C Y N 387 TRP OXT O N N 388 TRP H H N N 389 TRP H2 H N N 390 TRP HA H N N 391 TRP HB2 H N N 392 TRP HB3 H N N 393 TRP HD1 H N N 394 TRP HE1 H N N 395 TRP HE3 H N N 396 TRP HZ2 H N N 397 TRP HZ3 H N N 398 TRP HH2 H N N 399 TRP HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CXM N CA sing N N 70 CXM N CN sing N N 71 CXM N H sing N N 72 CXM CA CB sing N N 73 CXM CA C sing N N 74 CXM CA HA sing N N 75 CXM CB CG sing N N 76 CXM CB HB2 sing N N 77 CXM CB HB3 sing N N 78 CXM CG SD sing N N 79 CXM CG HG2 sing N N 80 CXM CG HG3 sing N N 81 CXM SD CE sing N N 82 CXM CE HE1 sing N N 83 CXM CE HE2 sing N N 84 CXM CE HE3 sing N N 85 CXM C O doub N N 86 CXM C OXT sing N N 87 CXM CN ON1 doub N N 88 CXM CN ON2 sing N N 89 CXM ON2 HO2 sing N N 90 CXM OXT HXT sing N N 91 CYS N CA sing N N 92 CYS N H sing N N 93 CYS N H2 sing N N 94 CYS CA C sing N N 95 CYS CA CB sing N N 96 CYS CA HA sing N N 97 CYS C O doub N N 98 CYS C OXT sing N N 99 CYS CB SG sing N N 100 CYS CB HB2 sing N N 101 CYS CB HB3 sing N N 102 CYS SG HG sing N N 103 CYS OXT HXT sing N N 104 GLN N CA sing N N 105 GLN N H sing N N 106 GLN N H2 sing N N 107 GLN CA C sing N N 108 GLN CA CB sing N N 109 GLN CA HA sing N N 110 GLN C O doub N N 111 GLN C OXT sing N N 112 GLN CB CG sing N N 113 GLN CB HB2 sing N N 114 GLN CB HB3 sing N N 115 GLN CG CD sing N N 116 GLN CG HG2 sing N N 117 GLN CG HG3 sing N N 118 GLN CD OE1 doub N N 119 GLN CD NE2 sing N N 120 GLN NE2 HE21 sing N N 121 GLN NE2 HE22 sing N N 122 GLN OXT HXT sing N N 123 GLU N CA sing N N 124 GLU N H sing N N 125 GLU N H2 sing N N 126 GLU CA C sing N N 127 GLU CA CB sing N N 128 GLU CA HA sing N N 129 GLU C O doub N N 130 GLU C OXT sing N N 131 GLU CB CG sing N N 132 GLU CB HB2 sing N N 133 GLU CB HB3 sing N N 134 GLU CG CD sing N N 135 GLU CG HG2 sing N N 136 GLU CG HG3 sing N N 137 GLU CD OE1 doub N N 138 GLU CD OE2 sing N N 139 GLU OE2 HE2 sing N N 140 GLU OXT HXT sing N N 141 GLY N CA sing N N 142 GLY N H sing N N 143 GLY N H2 sing N N 144 GLY CA C sing N N 145 GLY CA HA2 sing N N 146 GLY CA HA3 sing N N 147 GLY C O doub N N 148 GLY C OXT sing N N 149 GLY OXT HXT sing N N 150 HIS N CA sing N N 151 HIS N H sing N N 152 HIS N H2 sing N N 153 HIS CA C sing N N 154 HIS CA CB sing N N 155 HIS CA HA sing N N 156 HIS C O doub N N 157 HIS C OXT sing N N 158 HIS CB CG sing N N 159 HIS CB HB2 sing N N 160 HIS CB HB3 sing N N 161 HIS CG ND1 sing Y N 162 HIS CG CD2 doub Y N 163 HIS ND1 CE1 doub Y N 164 HIS ND1 HD1 sing N N 165 HIS CD2 NE2 sing Y N 166 HIS CD2 HD2 sing N N 167 HIS CE1 NE2 sing Y N 168 HIS CE1 HE1 sing N N 169 HIS NE2 HE2 sing N N 170 HIS OXT HXT sing N N 171 HOH O H1 sing N N 172 HOH O H2 sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 KCX N CA sing N N 195 KCX N H sing N N 196 KCX N H2 sing N N 197 KCX CA CB sing N N 198 KCX CA C sing N N 199 KCX CA HA sing N N 200 KCX CB CG sing N N 201 KCX CB HB2 sing N N 202 KCX CB HB3 sing N N 203 KCX CG CD sing N N 204 KCX CG HG2 sing N N 205 KCX CG HG3 sing N N 206 KCX CD CE sing N N 207 KCX CD HD2 sing N N 208 KCX CD HD3 sing N N 209 KCX CE NZ sing N N 210 KCX CE HE2 sing N N 211 KCX CE HE3 sing N N 212 KCX NZ CX sing N N 213 KCX NZ HZ sing N N 214 KCX C O doub N N 215 KCX C OXT sing N N 216 KCX CX OQ1 doub N N 217 KCX CX OQ2 sing N N 218 KCX OXT HXT sing N N 219 KCX OQ2 HQ2 sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 OH O HO sing N N 285 PHE N CA sing N N 286 PHE N H sing N N 287 PHE N H2 sing N N 288 PHE CA C sing N N 289 PHE CA CB sing N N 290 PHE CA HA sing N N 291 PHE C O doub N N 292 PHE C OXT sing N N 293 PHE CB CG sing N N 294 PHE CB HB2 sing N N 295 PHE CB HB3 sing N N 296 PHE CG CD1 doub Y N 297 PHE CG CD2 sing Y N 298 PHE CD1 CE1 sing Y N 299 PHE CD1 HD1 sing N N 300 PHE CD2 CE2 doub Y N 301 PHE CD2 HD2 sing N N 302 PHE CE1 CZ doub Y N 303 PHE CE1 HE1 sing N N 304 PHE CE2 CZ sing Y N 305 PHE CE2 HE2 sing N N 306 PHE CZ HZ sing N N 307 PHE OXT HXT sing N N 308 PRO N CA sing N N 309 PRO N CD sing N N 310 PRO N H sing N N 311 PRO CA C sing N N 312 PRO CA CB sing N N 313 PRO CA HA sing N N 314 PRO C O doub N N 315 PRO C OXT sing N N 316 PRO CB CG sing N N 317 PRO CB HB2 sing N N 318 PRO CB HB3 sing N N 319 PRO CG CD sing N N 320 PRO CG HG2 sing N N 321 PRO CG HG3 sing N N 322 PRO CD HD2 sing N N 323 PRO CD HD3 sing N N 324 PRO OXT HXT sing N N 325 SER N CA sing N N 326 SER N H sing N N 327 SER N H2 sing N N 328 SER CA C sing N N 329 SER CA CB sing N N 330 SER CA HA sing N N 331 SER C O doub N N 332 SER C OXT sing N N 333 SER CB OG sing N N 334 SER CB HB2 sing N N 335 SER CB HB3 sing N N 336 SER OG HG sing N N 337 SER OXT HXT sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TRP N CA sing N N 355 TRP N H sing N N 356 TRP N H2 sing N N 357 TRP CA C sing N N 358 TRP CA CB sing N N 359 TRP CA HA sing N N 360 TRP C O doub N N 361 TRP C OXT sing N N 362 TRP CB CG sing N N 363 TRP CB HB2 sing N N 364 TRP CB HB3 sing N N 365 TRP CG CD1 doub Y N 366 TRP CG CD2 sing Y N 367 TRP CD1 NE1 sing Y N 368 TRP CD1 HD1 sing N N 369 TRP CD2 CE2 doub Y N 370 TRP CD2 CE3 sing Y N 371 TRP NE1 CE2 sing Y N 372 TRP NE1 HE1 sing N N 373 TRP CE2 CZ2 sing Y N 374 TRP CE3 CZ3 doub Y N 375 TRP CE3 HE3 sing N N 376 TRP CZ2 CH2 doub Y N 377 TRP CZ2 HZ2 sing N N 378 TRP CZ3 CH2 sing Y N 379 TRP CZ3 HZ3 sing N N 380 TRP CH2 HH2 sing N N 381 TRP OXT HXT sing N N 382 TYR N CA sing N N 383 TYR N H sing N N 384 TYR N H2 sing N N 385 TYR CA C sing N N 386 TYR CA CB sing N N 387 TYR CA HA sing N N 388 TYR C O doub N N 389 TYR C OXT sing N N 390 TYR CB CG sing N N 391 TYR CB HB2 sing N N 392 TYR CB HB3 sing N N 393 TYR CG CD1 doub Y N 394 TYR CG CD2 sing Y N 395 TYR CD1 CE1 sing Y N 396 TYR CD1 HD1 sing N N 397 TYR CD2 CE2 doub Y N 398 TYR CD2 HD2 sing N N 399 TYR CE1 CZ doub Y N 400 TYR CE1 HE1 sing N N 401 TYR CE2 CZ sing Y N 402 TYR CE2 HE2 sing N N 403 TYR CZ OH sing N N 404 TYR OH HH sing N N 405 TYR OXT HXT sing N N 406 VAL N CA sing N N 407 VAL N H sing N N 408 VAL N H2 sing N N 409 VAL CA C sing N N 410 VAL CA CB sing N N 411 VAL CA HA sing N N 412 VAL C O doub N N 413 VAL C OXT sing N N 414 VAL CB CG1 sing N N 415 VAL CB CG2 sing N N 416 VAL CB HB sing N N 417 VAL CG1 HG11 sing N N 418 VAL CG1 HG12 sing N N 419 VAL CG1 HG13 sing N N 420 VAL CG2 HG21 sing N N 421 VAL CG2 HG22 sing N N 422 VAL CG2 HG23 sing N N 423 VAL OXT HXT sing N N 424 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-29 _em_admin.deposition_site PDBE _em_admin.entry_id 9GML _em_admin.last_update 2025-07-23 _em_admin.map_release_date 2025-07-23 _em_admin.title 'Cryo-EM structure of Sporosarcina pasteurii urease' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.25 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1474 _em_entity_assembly_naturalsource.organism 'Sporosarcina pasteurii' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 25 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 30 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 807538 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX ? # _em_specimen.concentration 2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9GML _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N NI O S # loop_ #